RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 GAS2L2Q8NHY3 880 aa19.87■□□□□ 0.77
CLN3-251ENST00000636853 NFAT5O94916 1531 aa19.87■□□□□ 0.77
CLN3-251ENST00000636853 USHBP1Q8N6Y0 703 aa19.87■□□□□ 0.77
CLN3-251ENST00000636853 RTL1A6NKG5 1358 aa19.86■□□□□ 0.77
CLN3-251ENST00000636853 IP6K1Q92551 441 aa19.86■□□□□ 0.77
CLN3-251ENST00000636853 NOP58Q9Y2X3 529 aaKnown RBP19.86■□□□□ 0.77
CLN3-251ENST00000636853 LMOD2Q6P5Q4 547 aa19.85■□□□□ 0.77
CLN3-251ENST00000636853 HDAC1Q13547 482 aaPredicted RBP19.85■□□□□ 0.77
CLN3-251ENST00000636853 KCNH5Q8NCM2 988 aa19.84■□□□□ 0.77
CLN3-251ENST00000636853 C19orf44Q9H6X5 657 aa19.84■□□□□ 0.77
CLN3-251ENST00000636853 TSPYL4Q9UJ04 414 aa19.83■□□□□ 0.77
CLN3-251ENST00000636853 ABCC4O15439 1325 aa19.83■□□□□ 0.76
CLN3-251ENST00000636853 KIAA0232Q92628 1395 aa19.83■□□□□ 0.76
CLN3-251ENST00000636853 ZBTB7BO15156 539 aaPredicted RBP19.82■□□□□ 0.76
CLN3-251ENST00000636853 C1orf167Q5SNV9 1468 aa19.82■□□□□ 0.76
CLN3-251ENST00000636853 KRT28Q7Z3Y7 464 aa19.82■□□□□ 0.76
CLN3-251ENST00000636853 GNAT3A8MTJ3 354 aa19.81■□□□□ 0.76
CLN3-251ENST00000636853 GCP02774 474 aa19.81■□□□□ 0.76
CLN3-251ENST00000636853 HSPA2P54652 639 aa19.81■□□□□ 0.76
CLN3-251ENST00000636853 ZBTB47Q9UFB7 747 aaPredicted RBP19.81■□□□□ 0.76
CLN3-251ENST00000636853 NBPF6Q5VWK0 638 aa19.81■□□□□ 0.76
CLN3-251ENST00000636853 NBPF4Q96M43 638 aa19.81■□□□□ 0.76
CLN3-251ENST00000636853 API5Q9BZZ5 524 aaKnown RBP19.81■□□□□ 0.76
CLN3-251ENST00000636853 C1orf115Q9H7X2 142 aa19.8■□□□□ 0.76
CLN3-251ENST00000636853 STRCP1A6NGW2 1772 aa19.8■□□□□ 0.76
CLN3-251ENST00000636853 HTATSF1O43719 755 aaKnown RBP19.79■□□□□ 0.76
CLN3-251ENST00000636853 HAP1P54257 671 aaPredicted RBP19.79■□□□□ 0.76
CLN3-251ENST00000636853 TMEM94Q12767 1356 aa19.79■□□□□ 0.76
CLN3-251ENST00000636853 MSH6P52701 1360 aa19.78■□□□□ 0.76
CLN3-251ENST00000636853 TRPM3Q9HCF6 1732 aaPredicted RBP19.78■□□□□ 0.76
CLN3-251ENST00000636853 LRRC59Q96AG4 307 aaKnown RBP19.78■□□□□ 0.76
CLN3-251ENST00000636853 RGPD2P0DJD1 1756 aa19.78■□□□□ 0.76
CLN3-251ENST00000636853 MAP3K5Q99683 1374 aa19.78■□□□□ 0.76
CLN3-251ENST00000636853 IL17REQ8NFR9 667 aa19.78■□□□□ 0.76
CLN3-251ENST00000636853 VIRMAQ69YN4 1812 aaKnown RBP19.77■□□□□ 0.76
CLN3-251ENST00000636853 ATF3P18847 181 aa19.77■□□□□ 0.76
CLN3-251ENST00000636853 ARHGEF25Q86VW2 580 aa19.77■□□□□ 0.76
CLN3-251ENST00000636853 SMC5Q8IY18 1101 aa19.77■□□□□ 0.76
CLN3-251ENST00000636853 SLIT3O75094 1523 aa19.76■□□□□ 0.75
CLN3-251ENST00000636853 LRRC37A3O60309 1634 aa19.76■□□□□ 0.75
CLN3-251ENST00000636853 CHMP4BQ9H444 224 aaKnown RBP19.76■□□□□ 0.75
CLN3-251ENST00000636853 KIF1AQ12756 1690 aa19.76■□□□□ 0.75
CLN3-251ENST00000636853 PHRF1Q9P1Y6 1649 aaKnown RBP19.76■□□□□ 0.75
CLN3-251ENST00000636853 DDX17Q92841 729 aaKnown RBP19.76■□□□□ 0.75
CLN3-251ENST00000636853 SLC4A2P04920 1241 aa19.74■□□□□ 0.75
CLN3-251ENST00000636853 MST1RQ04912 1400 aa19.74■□□□□ 0.75
CLN3-251ENST00000636853 USP19O94966 1318 aa19.74■□□□□ 0.75
CLN3-251ENST00000636853 RGS12O14924 1447 aa19.74■□□□□ 0.75
CLN3-251ENST00000636853 SEC24BO95487 1268 aa19.73■□□□□ 0.75
CLN3-251ENST00000636853 INTS3Q68E01 1043 aaKnown RBP19.72■□□□□ 0.75
CLN3-251ENST00000636853 AXIN2Q9Y2T1 843 aa19.72■□□□□ 0.75
CLN3-251ENST00000636853 PTPRCP08575 1304 aa19.71■□□□□ 0.75
CLN3-251ENST00000636853 TAF7Q15545 349 aaPredicted RBP19.71■□□□□ 0.75
CLN3-251ENST00000636853 G2E3Q7L622 706 aa19.71■□□□□ 0.75
CLN3-251ENST00000636853 SIRT2Q8IXJ6 389 aa19.71■□□□□ 0.75
CLN3-251ENST00000636853 ANKRD24Q8TF21 1146 aa19.71■□□□□ 0.75
CLN3-251ENST00000636853 NUCB1Q02818 461 aa19.7■□□□□ 0.74
CLN3-251ENST00000636853 ZC3H6P61129 1189 aaKnown RBP19.69■□□□□ 0.74
CLN3-251ENST00000636853 LNPKQ9C0E8 428 aa19.69■□□□□ 0.74
CLN3-251ENST00000636853 DEKP35659 375 aaKnown RBP19.69■□□□□ 0.74
CLN3-251ENST00000636853 NECTIN2Q92692 538 aa19.69■□□□□ 0.74
CLN3-251ENST00000636853 DDRGK1Q96HY6 314 aa19.69■□□□□ 0.74
CLN3-251ENST00000636853 LGR6Q9HBX8 967 aa19.69■□□□□ 0.74
CLN3-251ENST00000636853 ALS2Q96Q42 1657 aa19.69■□□□□ 0.74
CLN3-251ENST00000636853 RGPD5Q99666 1765 aa19.68■□□□□ 0.74
CLN3-251ENST00000636853 DCCP43146 1447 aa19.68■□□□□ 0.74
CLN3-251ENST00000636853 CADPS2Q86UW7 1296 aa19.67■□□□□ 0.74
CLN3-251ENST00000636853 CHD1LQ86WJ1 897 aa19.67■□□□□ 0.74
CLN3-251ENST00000636853 MED1Q15648 1581 aaPredicted RBP19.67■□□□□ 0.74
CLN3-251ENST00000636853 F6X3S4 739 aa19.67■□□□□ 0.74
CLN3-251ENST00000636853 ZNF530Q6P9A1 599 aaPredicted RBP19.67■□□□□ 0.74
CLN3-251ENST00000636853 STK31Q9BXU1 1019 aa19.67■□□□□ 0.74
CLN3-251ENST00000636853 CEMIPQ8WUJ3 1361 aa19.66■□□□□ 0.74
CLN3-251ENST00000636853 NCOA3Q9Y6Q9 1424 aa19.66■□□□□ 0.74
CLN3-251ENST00000636853 ANKRD45Q5TZF3 282 aa19.66■□□□□ 0.74
CLN3-251ENST00000636853 PLEKHO1Q53GL0 409 aaPredicted RBP19.65■□□□□ 0.74
CLN3-251ENST00000636853 GCC1Q96CN9 775 aa19.65■□□□□ 0.74
CLN3-251ENST00000636853 BABAM1Q9NWV8 329 aa19.65■□□□□ 0.74
CLN3-251ENST00000636853 CCDC30Q5VVM6 783 aa19.65■□□□□ 0.74
CLN3-251ENST00000636853 SLC4A10Q6U841 1118 aa19.65■□□□□ 0.74
CLN3-251ENST00000636853 MPRIPQ6WCQ1 1025 aa19.64■□□□□ 0.74
CLN3-251ENST00000636853 AKAP4Q5JQC9 854 aa19.64■□□□□ 0.73
CLN3-251ENST00000636853 CABLES1Q8TDN4 633 aa19.64■□□□□ 0.73
CLN3-251ENST00000636853 MEIS3Q99687 375 aa19.64■□□□□ 0.73
CLN3-251ENST00000636853 NCAPD2Q15021 1401 aa19.64■□□□□ 0.73
CLN3-251ENST00000636853 FAM208AQ9UK61 1670 aaKnown RBP19.63■□□□□ 0.73
CLN3-251ENST00000636853 KDM4FA0A1W2PPD8 638 aa19.63■□□□□ 0.73
CLN3-251ENST00000636853 SLC4A3P48751 1232 aa19.63■□□□□ 0.73
CLN3-251ENST00000636853 PXDNQ92626 1479 aa19.63■□□□□ 0.73
CLN3-251ENST00000636853 NPHP3Q7Z494 1330 aa19.62■□□□□ 0.73
CLN3-251ENST00000636853 LMO7Q8WWI1 1683 aa19.62■□□□□ 0.73
CLN3-251ENST00000636853 AMOTQ4VCS5 1084 aa19.62■□□□□ 0.73
CLN3-251ENST00000636853 ERBB3P21860 1342 aa19.62■□□□□ 0.73
CLN3-251ENST00000636853 FLIIQ13045 1269 aa19.62■□□□□ 0.73
CLN3-251ENST00000636853 XIRP1Q702N8 1843 aaKnown RBP19.61■□□□□ 0.73
CLN3-251ENST00000636853 ATP10DQ9P241 1426 aa19.61■□□□□ 0.73
CLN3-251ENST00000636853 KCNQ3O43525 872 aa19.6■□□□□ 0.73
CLN3-251ENST00000636853 TEFQ10587 303 aa19.6■□□□□ 0.73
CLN3-251ENST00000636853 FKBP5Q13451 457 aaPredicted RBP19.6■□□□□ 0.73
CLN3-251ENST00000636853 C1orf141Q5JVX7 400 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms