RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ZNF853P0CG23 659 aa13.7□□□□□ -0.22
CLN3-248ENST00000636355 LRRC59Q96AG4 307 aaKnown RBP13.7□□□□□ -0.22
CLN3-248ENST00000636355 CFAP44Q96MT7 982 aa13.7□□□□□ -0.22
CLN3-248ENST00000636355 NWD2Q9ULI1 1742 aa13.7□□□□□ -0.22
CLN3-248ENST00000636355 SCN11AQ9UI33 1791 aa13.69□□□□□ -0.22
CLN3-248ENST00000636355 AMOTQ4VCS5 1084 aa13.69□□□□□ -0.22
CLN3-248ENST00000636355 BABAM1Q9NWV8 329 aa13.69□□□□□ -0.22
CLN3-248ENST00000636355 CRB1P82279 1406 aa13.69□□□□□ -0.22
CLN3-248ENST00000636355 CEMIPQ8WUJ3 1361 aa13.69□□□□□ -0.22
CLN3-248ENST00000636355 SOS1Q07889 1333 aaPredicted RBP13.68□□□□□ -0.22
CLN3-248ENST00000636355 NBPF6Q5VWK0 638 aa13.68□□□□□ -0.22
CLN3-248ENST00000636355 RTF1Q92541 710 aaKnown RBP13.68□□□□□ -0.22
CLN3-248ENST00000636355 NBPF4Q96M43 638 aa13.68□□□□□ -0.22
CLN3-248ENST00000636355 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.68□□□□□ -0.22
CLN3-248ENST00000636355 MRC1P22897 1456 aa13.67□□□□□ -0.22
CLN3-248ENST00000636355 GNAT3A8MTJ3 354 aa13.67□□□□□ -0.22
CLN3-248ENST00000636355 PRDM11Q9NQV5 511 aa13.67□□□□□ -0.22
CLN3-248ENST00000636355 PPP4R2Q9NY27 417 aa13.67□□□□□ -0.22
CLN3-248ENST00000636355 NRAPQ86VF7 1730 aa13.67□□□□□ -0.22
CLN3-248ENST00000636355 WDR17Q8IZU2 1322 aa13.66□□□□□ -0.22
CLN3-248ENST00000636355 KIF16BQ96L93 1317 aa13.66□□□□□ -0.22
CLN3-248ENST00000636355 BRPF1P55201 1214 aaPredicted RBP13.66□□□□□ -0.22
CLN3-248ENST00000636355 ZC3H6P61129 1189 aaKnown RBP13.66□□□□□ -0.22
CLN3-248ENST00000636355 MTHFSDQ2M296 383 aaKnown RBP13.66□□□□□ -0.22
CLN3-248ENST00000636355 ALDH1L2Q3SY69 923 aa13.66□□□□□ -0.22
CLN3-248ENST00000636355 PELP1Q8IZL8 1130 aaKnown RBP13.66□□□□□ -0.22
CLN3-248ENST00000636355 RARSP54136 660 aaKnown RBP13.65□□□□□ -0.22
CLN3-248ENST00000636355 PDE3AQ14432 1141 aa13.65□□□□□ -0.22
CLN3-248ENST00000636355 PLEKHO1Q53GL0 409 aaPredicted RBP13.65□□□□□ -0.22
CLN3-248ENST00000636355 LTV1Q96GA3 475 aaPredicted RBP13.65□□□□□ -0.22
CLN3-248ENST00000636355 AXIN2Q9Y2T1 843 aa13.65□□□□□ -0.22
CLN3-248ENST00000636355 MEGF6O75095 1541 aa13.64□□□□□ -0.23
CLN3-248ENST00000636355 SHANK3Q9BYB0 1731 aa13.64□□□□□ -0.23
CLN3-248ENST00000636355 N4BP2Q86UW6 1770 aaPredicted RBP13.64□□□□□ -0.23
CLN3-248ENST00000636355 MS4A1P11836 297 aa13.64□□□□□ -0.23
CLN3-248ENST00000636355 AAMPQ13685 434 aa13.64□□□□□ -0.23
CLN3-248ENST00000636355 TSR2Q969E8 191 aaKnown RBP13.64□□□□□ -0.23
CLN3-248ENST00000636355 ZBTB7CA1YPR0 619 aa13.63□□□□□ -0.23
CLN3-248ENST00000636355 CHL1O00533 1208 aa13.63□□□□□ -0.23
CLN3-248ENST00000636355 AKAP4Q5JQC9 854 aa13.63□□□□□ -0.23
CLN3-248ENST00000636355 CABLES1Q8TDN4 633 aa13.63□□□□□ -0.23
CLN3-248ENST00000636355 RAPGEF4Q8WZA2 1011 aa13.63□□□□□ -0.23
CLN3-248ENST00000636355 MBIPQ9NS73 344 aa13.63□□□□□ -0.23
CLN3-248ENST00000636355 EXOSC9Q06265 439 aaKnown RBP13.62□□□□□ -0.23
CLN3-248ENST00000636355 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.61□□□□□ -0.23
CLN3-248ENST00000636355 FAM83GA6ND36 823 aa13.61□□□□□ -0.23
CLN3-248ENST00000636355 C1orf141Q5JVX7 400 aa13.61□□□□□ -0.23
CLN3-248ENST00000636355 USHBP1Q8N6Y0 703 aa13.61□□□□□ -0.23
CLN3-248ENST00000636355 LRP6O75581 1613 aa13.61□□□□□ -0.23
CLN3-248ENST00000636355 TATP17735 454 aaPredicted RBP13.6□□□□□ -0.23
CLN3-248ENST00000636355 ZNF530Q6P9A1 599 aaPredicted RBP13.6□□□□□ -0.23
CLN3-248ENST00000636355 THUMPD2Q9BTF0 503 aaKnown RBP13.6□□□□□ -0.23
CLN3-248ENST00000636355 CHMP4AQ9BY43 222 aa13.6□□□□□ -0.23
CLN3-248ENST00000636355 NLRP2Q9NX02 1062 aa13.6□□□□□ -0.23
CLN3-248ENST00000636355 SPG7Q9UQ90 795 aa13.6□□□□□ -0.23
CLN3-248ENST00000636355 CSB-PGBD3P0DP91 1061 aa13.59□□□□□ -0.23
CLN3-248ENST00000636355 IRX6P78412 446 aaPredicted RBP13.59□□□□□ -0.23
CLN3-248ENST00000636355 MCM10Q7L590 875 aa13.59□□□□□ -0.23
CLN3-248ENST00000636355 CARD10Q9BWT7 1032 aa13.59□□□□□ -0.23
CLN3-248ENST00000636355 SMC4Q9NTJ3 1288 aa13.59□□□□□ -0.23
CLN3-248ENST00000636355 PAPPAQ13219 1627 aa13.58□□□□□ -0.24
CLN3-248ENST00000636355 HSP90AB1P08238 724 aaKnown RBP13.58□□□□□ -0.24
CLN3-248ENST00000636355 CANXP27824 592 aaKnown RBP13.58□□□□□ -0.24
CLN3-248ENST00000636355 CHRNA2Q15822 529 aa13.58□□□□□ -0.24
CLN3-248ENST00000636355 TWISTNBQ3B726 338 aaPredicted RBP13.58□□□□□ -0.24
CLN3-248ENST00000636355 LAMB4A4D0S4 1761 aa13.58□□□□□ -0.24
CLN3-248ENST00000636355 DISP2A7MBM2 1401 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 IPO8O15397 1037 aaKnown RBP13.57□□□□□ -0.24
CLN3-248ENST00000636355 BCAR3O75815 825 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 HOXB7P09629 217 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 DCTN1Q14203 1278 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 ZKSCAN2Q63HK3 967 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 ARHGAP45Q92619 1136 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 PCDH11XQ9BZA7 1347 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 PCDH11YQ9BZA8 1340 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 JCADQ9P266 1359 aa13.57□□□□□ -0.24
CLN3-248ENST00000636355 UBR2Q8IWV8 1755 aa13.56□□□□□ -0.24
CLN3-248ENST00000636355 VAMP4O75379 141 aa13.56□□□□□ -0.24
CLN3-248ENST00000636355 TAF7Q15545 349 aaPredicted RBP13.56□□□□□ -0.24
CLN3-248ENST00000636355 TSPYL4Q9UJ04 414 aa13.56□□□□□ -0.24
CLN3-248ENST00000636355 LAS1LQ9Y4W2 734 aaKnown RBP13.56□□□□□ -0.24
CLN3-248ENST00000636355 KDM6AO15550 1401 aaPredicted RBP13.56□□□□□ -0.24
CLN3-248ENST00000636355 SLIT2O94813 1529 aa13.55□□□□□ -0.24
CLN3-248ENST00000636355 IL17REQ8NFR9 667 aa13.55□□□□□ -0.24
CLN3-248ENST00000636355 SSH1Q8WYL5 1049 aa13.55□□□□□ -0.24
CLN3-248ENST00000636355 PLIN1O60240 522 aa13.54□□□□□ -0.24
CLN3-248ENST00000636355 PLEKHG5O94827 1062 aa13.54□□□□□ -0.24
CLN3-248ENST00000636355 TEFQ10587 303 aa13.54□□□□□ -0.24
CLN3-248ENST00000636355 ATF7IPQ6VMQ6 1270 aa13.54□□□□□ -0.24
CLN3-248ENST00000636355 TOM1L2Q6ZVM7 507 aa13.54□□□□□ -0.24
CLN3-248ENST00000636355 IFNL2Q8IZJ0 200 aa13.54□□□□□ -0.24
CLN3-248ENST00000636355 RGS17Q9UGC6 210 aaPredicted RBP13.54□□□□□ -0.24
CLN3-248ENST00000636355 PXDNLA1KZ92 1463 aa13.54□□□□□ -0.24
CLN3-248ENST00000636355 RNMTO43148 476 aaKnown RBP13.53□□□□□ -0.24
CLN3-248ENST00000636355 EXOC6Q8TAG9 804 aa13.53□□□□□ -0.24
CLN3-248ENST00000636355 DCAF5Q96JK2 942 aa13.53□□□□□ -0.24
CLN3-248ENST00000636355 CCDC136Q96JN2 1154 aa13.53□□□□□ -0.24
CLN3-248ENST00000636355 CRBNQ96SW2 442 aa13.53□□□□□ -0.24
CLN3-248ENST00000636355 SPATA31A6Q5VVP1 1343 aa13.53□□□□□ -0.24
CLN3-248ENST00000636355 TNS2Q63HR2 1409 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms