RNA–Protein interactions for RNA: ENST00000636058.1

CACNA1A-223, Transcript of calcium voltage-gated channel subunit alpha1 A, human

TSL 5

Gene CACNA1A, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1A-223	ENST00000636058	WDR63	Q8IWG1	891 aa		12.58	□□□□□ -0.4
CACNA1A-223	ENST00000636058	RAPGEF4	Q8WZA2	1011 aa		12.58	□□□□□ -0.4
CACNA1A-223	ENST00000636058	BCL9L	Q86UU0	1499 aa		12.58	□□□□□ -0.4
CACNA1A-223	ENST00000636058	WNK3	Q9BYP7	1800 aa		12.58	□□□□□ -0.4
CACNA1A-223	ENST00000636058	OVOS2	A0A0G2JMS6	1433 aa		12.57	□□□□□ -0.4
CACNA1A-223	ENST00000636058	TAT	P17735	454 aa	Predicted RBP	12.57	□□□□□ -0.4
CACNA1A-223	ENST00000636058	PLEKHO1	Q53GL0	409 aa	Predicted RBP	12.57	□□□□□ -0.4
CACNA1A-223	ENST00000636058	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.57	□□□□□ -0.4
CACNA1A-223	ENST00000636058	FBXO41	Q8TF61	875 aa		12.57	□□□□□ -0.4
CACNA1A-223	ENST00000636058	CDCA7L	Q96GN5	454 aa		12.57	□□□□□ -0.4
CACNA1A-223	ENST00000636058	C8orf37	Q96NL8	207 aa		12.57	□□□□□ -0.4
CACNA1A-223	ENST00000636058	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.57	□□□□□ -0.4
CACNA1A-223	ENST00000636058	NGLY1	Q96IV0	654 aa		12.56	□□□□□ -0.4
CACNA1A-223	ENST00000636058	MAP3K5	Q99683	1374 aa		12.56	□□□□□ -0.4
CACNA1A-223	ENST00000636058	LRRC37A3	O60309	1634 aa		12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	DISP2	A7MBM2	1401 aa		12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	HTATSF1	O43719	755 aa	Known RBP	12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	IL2RB	P14784	551 aa		12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	SLFN5	Q08AF3	891 aa		12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	UNC5CL	Q8IV45	518 aa		12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	TRMT2A	Q8IZ69	625 aa	Known RBP	12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	IL16	Q14005	1332 aa		12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	SPATA31A1	Q5TZJ5	1347 aa		12.55	□□□□□ -0.4
CACNA1A-223	ENST00000636058	ADAMTS7	Q9UKP4	1686 aa		12.54	□□□□□ -0.4
CACNA1A-223	ENST00000636058	SHANK3	Q9BYB0	1731 aa		12.54	□□□□□ -0.4
CACNA1A-223	ENST00000636058	GNAT3	A8MTJ3	354 aa		12.54	□□□□□ -0.4
CACNA1A-223	ENST00000636058		E9PSI1	815 aa		12.54	□□□□□ -0.4
CACNA1A-223	ENST00000636058	MEX3C	Q5U5Q3	659 aa	Known RBP	12.54	□□□□□ -0.4
CACNA1A-223	ENST00000636058	SPG7	Q9UQ90	795 aa		12.54	□□□□□ -0.4
CACNA1A-223	ENST00000636058	SPATA31A5	Q5VU36	1347 aa		12.54	□□□□□ -0.4
CACNA1A-223	ENST00000636058	SPATA31A7	Q8IWB4	1347 aa		12.54	□□□□□ -0.4
CACNA1A-223	ENST00000636058	CALD1	Q05682	793 aa	Known RBP	12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	VPS72	Q15906	364 aa		12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	AKAP4	Q5JQC9	854 aa		12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	DUSP27	Q5VZP5	1158 aa		12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	ZNF530	Q6P9A1	599 aa	Predicted RBP	12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	RTF1	Q92541	710 aa	Known RBP	12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	THUMPD2	Q9BTF0	503 aa	Known RBP	12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	USP35	Q9P2H5	1018 aa		12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	THRAP3	Q9Y2W1	955 aa	Known RBP	12.53	□□□□□ -0.4
CACNA1A-223	ENST00000636058	DCTN1	Q14203	1278 aa		12.52	□□□□□ -0.41
CACNA1A-223	ENST00000636058	MCM10	Q7L590	875 aa		12.52	□□□□□ -0.41
CACNA1A-223	ENST00000636058	USP21	Q9UK80	565 aa		12.52	□□□□□ -0.41
CACNA1A-223	ENST00000636058	VIRMA	Q69YN4	1812 aa	Known RBP	12.52	□□□□□ -0.41
CACNA1A-223	ENST00000636058	CEMIP	Q8WUJ3	1361 aa		12.52	□□□□□ -0.41
CACNA1A-223	ENST00000636058	PHKG2	P15735	406 aa		12.51	□□□□□ -0.41
CACNA1A-223	ENST00000636058	C1orf141	Q5JVX7	400 aa		12.51	□□□□□ -0.41
CACNA1A-223	ENST00000636058	BARGIN	Q6ZT62	677 aa		12.51	□□□□□ -0.41
CACNA1A-223	ENST00000636058	IL17RE	Q8NFR9	667 aa		12.51	□□□□□ -0.41
CACNA1A-223	ENST00000636058	AFF2	P51816	1311 aa		12.51	□□□□□ -0.41
CACNA1A-223	ENST00000636058	CYP27B1	O15528	508 aa		12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	ZNF853	P0CG23	659 aa		12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	IFNL2	Q8IZJ0	200 aa		12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	ZCRB1	Q8TBF4	217 aa	Known RBP	12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	CDCA7	Q9BWT1	371 aa	Predicted RBP	12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	MYH16	Q9H6N6	1097 aa		12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	IFT57	Q9NWB7	429 aa		12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	PCDH11X	Q9BZA7	1347 aa		12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	PCDH11Y	Q9BZA8	1340 aa		12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	SCN11A	Q9UI33	1791 aa		12.5	□□□□□ -0.41
CACNA1A-223	ENST00000636058	KDM6A	O15550	1401 aa	Predicted RBP	12.49	□□□□□ -0.41
CACNA1A-223	ENST00000636058	ATRN	O75882	1429 aa		12.49	□□□□□ -0.41
CACNA1A-223	ENST00000636058	TNS2	Q63HR2	1409 aa		12.49	□□□□□ -0.41
CACNA1A-223	ENST00000636058	FANCI	Q9NVI1	1328 aa		12.49	□□□□□ -0.41
CACNA1A-223	ENST00000636058	CFAP44	Q96MT7	982 aa		12.49	□□□□□ -0.41
CACNA1A-223	ENST00000636058	SIPA1L3	O60292	1781 aa	Predicted RBP	12.48	□□□□□ -0.41
CACNA1A-223	ENST00000636058	GLI3	P10071	1580 aa		12.48	□□□□□ -0.41
CACNA1A-223	ENST00000636058	GNAI1	P63096	354 aa		12.48	□□□□□ -0.41
CACNA1A-223	ENST00000636058	MPRIP	Q6WCQ1	1025 aa		12.48	□□□□□ -0.41
CACNA1A-223	ENST00000636058	LGR6	Q9HBX8	967 aa		12.48	□□□□□ -0.41
CACNA1A-223	ENST00000636058	CCDC9	Q9Y3X0	531 aa	Known RBP	12.48	□□□□□ -0.41
CACNA1A-223	ENST00000636058	MRC1	P22897	1456 aa		12.47	□□□□□ -0.41
CACNA1A-223	ENST00000636058	CHL1	O00533	1208 aa		12.47	□□□□□ -0.41
CACNA1A-223	ENST00000636058	RNMT	O43148	476 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1A-223	ENST00000636058	HSP90AB1	P08238	724 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1A-223	ENST00000636058	NKX1-1	Q15270	411 aa	Predicted RBP	12.47	□□□□□ -0.41
CACNA1A-223	ENST00000636058	TSR2	Q969E8	191 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1A-223	ENST00000636058	DCAF5	Q96JK2	942 aa		12.47	□□□□□ -0.41
CACNA1A-223	ENST00000636058	THSD7A	Q9UPZ6	1657 aa		12.47	□□□□□ -0.41
CACNA1A-223	ENST00000636058	MBIP	Q9NS73	344 aa		12.46	□□□□□ -0.41
CACNA1A-223	ENST00000636058	BABAM1	Q9NWV8	329 aa		12.46	□□□□□ -0.41
CACNA1A-223	ENST00000636058	TRPC5	Q9UL62	973 aa	Predicted RBP	12.46	□□□□□ -0.41
CACNA1A-223	ENST00000636058	LAS1L	Q9Y4W2	734 aa	Known RBP	12.46	□□□□□ -0.41
CACNA1A-223	ENST00000636058	EXOC5	O00471	708 aa		12.45	□□□□□ -0.42
CACNA1A-223	ENST00000636058	GJD4	Q96KN9	370 aa	Predicted RBP	12.45	□□□□□ -0.42
CACNA1A-223	ENST00000636058	KDM3B	Q7LBC6	1761 aa		12.45	□□□□□ -0.42
CACNA1A-223	ENST00000636058	TOGARAM1	Q9Y4F4	1720 aa		12.45	□□□□□ -0.42
CACNA1A-223	ENST00000636058	TEF	Q10587	303 aa		12.44	□□□□□ -0.42
CACNA1A-223	ENST00000636058	TAF7	Q15545	349 aa	Predicted RBP	12.44	□□□□□ -0.42
CACNA1A-223	ENST00000636058	DDB1	Q16531	1140 aa		12.44	□□□□□ -0.42
CACNA1A-223	ENST00000636058	FAM98C	Q17RN3	349 aa	Known RBP	12.44	□□□□□ -0.42
CACNA1A-223	ENST00000636058	DDX54	Q8TDD1	881 aa	Known RBP	12.44	□□□□□ -0.42
CACNA1A-223	ENST00000636058	EXOSC9	Q06265	439 aa	Known RBP	12.43	□□□□□ -0.42
CACNA1A-223	ENST00000636058	SLC52A2	Q9HAB3	445 aa		12.43	□□□□□ -0.42
CACNA1A-223	ENST00000636058	TSPYL4	Q9UJ04	414 aa		12.43	□□□□□ -0.42
CACNA1A-223	ENST00000636058	RCAN3	Q9UKA8	241 aa		12.43	□□□□□ -0.42
CACNA1A-223	ENST00000636058	ONECUT3	O60422	494 aa	Predicted RBP	12.42	□□□□□ -0.42
CACNA1A-223	ENST00000636058	CT47B1	P0C2W7	299 aa	Predicted RBP	12.42	□□□□□ -0.42
CACNA1A-223	ENST00000636058	ZNF772	Q68DY9	489 aa	Predicted RBP	12.42	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms