RNA–Protein interactions for RNA: ENST00000636020.1

CLN6-212, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-212ENST00000636020 KIF3CO14782 793 aa26.15■■□□□ 1.78
CLN6-212ENST00000636020 NME9Q86XW9 330 aa26.15■■□□□ 1.78
CLN6-212ENST00000636020 USP54Q70EL1 1684 aa26.15■■□□□ 1.78
CLN6-212ENST00000636020 MON2Q7Z3U7 1717 aa26.12■■□□□ 1.77
CLN6-212ENST00000636020 DNAJC5GQ8N7S2 189 aa26.11■■□□□ 1.77
CLN6-212ENST00000636020 APLP1P51693 650 aa26.1■■□□□ 1.77
CLN6-212ENST00000636020 DOT1LQ8TEK3 1739 aa26.1■■□□□ 1.77
CLN6-212ENST00000636020 SBNO2Q9Y2G9 1366 aa26.09■■□□□ 1.77
CLN6-212ENST00000636020 IP6K1Q92551 441 aa26.08■■□□□ 1.77
CLN6-212ENST00000636020 USP47Q96K76 1375 aa26.07■■□□□ 1.76
CLN6-212ENST00000636020 ZCRB1Q8TBF4 217 aaKnown RBP26.06■■□□□ 1.76
CLN6-212ENST00000636020 LTV1Q96GA3 475 aaPredicted RBP26.06■■□□□ 1.76
CLN6-212ENST00000636020 FLAD1Q8NFF5 587 aa26.05■■□□□ 1.76
CLN6-212ENST00000636020 IGSF1Q8N6C5 1336 aa26.05■■□□□ 1.76
CLN6-212ENST00000636020 CD163L1Q9NR16 1453 aa26.04■■□□□ 1.76
CLN6-212ENST00000636020 FAM208AQ9UK61 1670 aaKnown RBP26.03■■□□□ 1.76
CLN6-212ENST00000636020 WWC3Q9ULE0 1092 aa26.02■■□□□ 1.76
CLN6-212ENST00000636020 TOMM70O94826 608 aa25.99■■□□□ 1.75
CLN6-212ENST00000636020 HMGB2P26583 209 aaKnown RBP25.99■■□□□ 1.75
CLN6-212ENST00000636020 C5P01031 1676 aa25.99■■□□□ 1.75
CLN6-212ENST00000636020 L3MBTL2Q969R5 705 aa25.98■■□□□ 1.75
CLN6-212ENST00000636020 MEGF6O75095 1541 aa25.98■■□□□ 1.75
CLN6-212ENST00000636020 EDC4Q6P2E9 1401 aaKnown RBP25.97■■□□□ 1.75
CLN6-212ENST00000636020 HDGFL2Q7Z4V5 671 aaPredicted RBP25.97■■□□□ 1.75
CLN6-212ENST00000636020 ROCK2O75116 1388 aaKnown RBP25.95■■□□□ 1.75
CLN6-212ENST00000636020 COL13A1Q5TAT6 717 aaPredicted RBP25.95■■□□□ 1.74
CLN6-212ENST00000636020 AMIGO3Q86WK7 504 aa25.95■■□□□ 1.74
CLN6-212ENST00000636020 SLC12A5Q9H2X9 1139 aa25.95■■□□□ 1.74
CLN6-212ENST00000636020 TAF1LQ8IZX4 1826 aa25.94■■□□□ 1.74
CLN6-212ENST00000636020 TMC1Q8TDI8 760 aa25.94■■□□□ 1.74
CLN6-212ENST00000636020 HOXC9P31274 260 aa25.93■■□□□ 1.74
CLN6-212ENST00000636020 CICQ96RK0 1608 aaPredicted RBP25.92■■□□□ 1.74
CLN6-212ENST00000636020 MAP3K19Q56UN5 1328 aa25.92■■□□□ 1.74
CLN6-212ENST00000636020 PCNTO95613 3336 aa25.92■■□□□ 1.74
CLN6-212ENST00000636020 PALLDQ8WX93 1383 aa25.92■■□□□ 1.74
CLN6-212ENST00000636020 RGPD2P0DJD1 1756 aa25.91■■□□□ 1.74
CLN6-212ENST00000636020 AK7Q96M32 723 aa25.9■■□□□ 1.74
CLN6-212ENST00000636020 CGNL1Q0VF96 1302 aa25.89■■□□□ 1.74
CLN6-212ENST00000636020 SMIM5Q71RC9 77 aa25.89■■□□□ 1.74
CLN6-212ENST00000636020 TERF2IPQ9NYB0 399 aa25.89■■□□□ 1.74
CLN6-212ENST00000636020 C4BP0C0L5 1744 aa25.88■■□□□ 1.73
CLN6-212ENST00000636020 A0A1W2PP64 1363 aa25.88■■□□□ 1.73
CLN6-212ENST00000636020 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.88■■□□□ 1.73
CLN6-212ENST00000636020 AMPHP49418 695 aa25.88■■□□□ 1.73
CLN6-212ENST00000636020 JMYQ8N9B5 988 aa25.88■■□□□ 1.73
CLN6-212ENST00000636020 KLRG1Q96E93 195 aa25.88■■□□□ 1.73
CLN6-212ENST00000636020 TOGARAM1Q9Y4F4 1720 aa25.88■■□□□ 1.73
CLN6-212ENST00000636020 CAPN15O75808 1086 aa25.87■■□□□ 1.73
CLN6-212ENST00000636020 PHF14O94880 888 aa25.87■■□□□ 1.73
CLN6-212ENST00000636020 FBLN1P23142 703 aa25.87■■□□□ 1.73
CLN6-212ENST00000636020 NBPF6Q5VWK0 638 aa25.87■■□□□ 1.73
CLN6-212ENST00000636020 NBPF4Q96M43 638 aa25.87■■□□□ 1.73
CLN6-212ENST00000636020 NMRK2Q9NPI5 230 aa25.87■■□□□ 1.73
CLN6-212ENST00000636020 MPRIPQ6WCQ1 1025 aa25.86■■□□□ 1.73
CLN6-212ENST00000636020 WDR90Q96KV7 1748 aa25.85■■□□□ 1.73
CLN6-212ENST00000636020 UBR3Q6ZT12 1888 aa25.85■■□□□ 1.73
CLN6-212ENST00000636020 SSFA2P28290 1259 aa25.84■■□□□ 1.73
CLN6-212ENST00000636020 HTRA3P83110 453 aa25.84■■□□□ 1.73
CLN6-212ENST00000636020 RBM46Q8TBY0 533 aaKnown RBP25.84■■□□□ 1.73
CLN6-212ENST00000636020 RAPGEF4Q8WZA2 1011 aa25.84■■□□□ 1.73
CLN6-212ENST00000636020 SMARCC1Q92922 1105 aaPredicted RBP25.84■■□□□ 1.73
CLN6-212ENST00000636020 NSD3Q9BZ95 1437 aa25.84■■□□□ 1.73
CLN6-212ENST00000636020 USHBP1Q8N6Y0 703 aa25.83■■□□□ 1.73
CLN6-212ENST00000636020 COG3Q96JB2 828 aa25.83■■□□□ 1.73
CLN6-212ENST00000636020 PRELPP51888 382 aa25.82■■□□□ 1.72
CLN6-212ENST00000636020 TNS4Q8IZW8 715 aa25.82■■□□□ 1.72
CLN6-212ENST00000636020 PCDH11XQ9BZA7 1347 aa25.81■■□□□ 1.72
CLN6-212ENST00000636020 PCDH11YQ9BZA8 1340 aa25.81■■□□□ 1.72
CLN6-212ENST00000636020 PXDNLA1KZ92 1463 aa25.8■■□□□ 1.72
CLN6-212ENST00000636020 TATP17735 454 aaPredicted RBP25.8■■□□□ 1.72
CLN6-212ENST00000636020 BCS1LQ9Y276 419 aa25.79■■□□□ 1.72
CLN6-212ENST00000636020 CYP27B1O15528 508 aa25.78■■□□□ 1.72
CLN6-212ENST00000636020 TGFB2P61812 414 aa25.78■■□□□ 1.72
CLN6-212ENST00000636020 ARHGAP27Q6ZUM4 889 aa25.78■■□□□ 1.72
CLN6-212ENST00000636020 RTL1A6NKG5 1358 aa25.78■■□□□ 1.72
CLN6-212ENST00000636020 MMP10P09238 476 aa25.77■■□□□ 1.72
CLN6-212ENST00000636020 FSTL1Q12841 308 aa25.77■■□□□ 1.72
CLN6-212ENST00000636020 LINC00116Q8NCU8 138 aa25.77■■□□□ 1.72
CLN6-212ENST00000636020 PUS7Q96PZ0 661 aaKnown RBP25.77■■□□□ 1.72
CLN6-212ENST00000636020 A0A0G2JLW4 131 aa25.76■■□□□ 1.71
CLN6-212ENST00000636020 PIGBQ92521 554 aa25.76■■□□□ 1.71
CLN6-212ENST00000636020 KIAA1551Q9HCM1 1747 aa25.76■■□□□ 1.71
CLN6-212ENST00000636020 KIF13BQ9NQT8 1826 aa25.75■■□□□ 1.71
CLN6-212ENST00000636020 C16orf71Q8IYS4 520 aaPredicted RBP25.75■■□□□ 1.71
CLN6-212ENST00000636020 ITGB4P16144 1822 aa25.74■■□□□ 1.71
CLN6-212ENST00000636020 RRS1Q15050 365 aaKnown RBP25.74■■□□□ 1.71
CLN6-212ENST00000636020 SIN3AQ96ST3 1273 aa25.74■■□□□ 1.71
CLN6-212ENST00000636020 MAP2P11137 1827 aaKnown RBP25.73■■□□□ 1.71
CLN6-212ENST00000636020 LOC102724428A0A0B4J2F2 783 aa25.73■■□□□ 1.71
CLN6-212ENST00000636020 SIK1P57059 783 aa25.73■■□□□ 1.71
CLN6-212ENST00000636020 N4BP2Q86UW6 1770 aaPredicted RBP25.73■■□□□ 1.71
CLN6-212ENST00000636020 GNPATO15228 680 aa25.71■■□□□ 1.71
CLN6-212ENST00000636020 C9orf131Q5VYM1 1079 aa25.71■■□□□ 1.71
CLN6-212ENST00000636020 SMG6Q86US8 1419 aaKnown RBP25.71■■□□□ 1.71
CLN6-212ENST00000636020 FCHSD2O94868 740 aa25.7■■□□□ 1.7
CLN6-212ENST00000636020 CARD11Q9BXL7 1154 aa25.7■■□□□ 1.7
CLN6-212ENST00000636020 DPEP1P16444 411 aa25.69■■□□□ 1.7
CLN6-212ENST00000636020 ITPK1Q13572 414 aa25.69■■□□□ 1.7
CLN6-212ENST00000636020 C10orf71Q711Q0 1435 aa25.69■■□□□ 1.7
CLN6-212ENST00000636020 NKX1-1Q15270 411 aaPredicted RBP25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms