RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 SOCS7O14512 581 aa8.07□□□□□ -1.12
SCN1A-211ENST00000635893 GPC1P35052 558 aa8.07□□□□□ -1.12
SCN1A-211ENST00000635893 ERVK-9P63128 1117 aa8.07□□□□□ -1.12
SCN1A-211ENST00000635893 NR1H3Q13133 447 aa8.07□□□□□ -1.12
SCN1A-211ENST00000635893 CC2D2BQ6DHV5 1058 aa8.07□□□□□ -1.12
SCN1A-211ENST00000635893 PRICKLE2Q7Z3G6 844 aa8.07□□□□□ -1.12
SCN1A-211ENST00000635893 ZNF330Q9Y3S2 320 aaPredicted RBP8.07□□□□□ -1.12
SCN1A-211ENST00000635893 RNF225M0QZC1 329 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-211ENST00000635893 GSK3AP49840 483 aa8.06□□□□□ -1.12
SCN1A-211ENST00000635893 BRPF1P55201 1214 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-211ENST00000635893 SVOPQ8N4V2 548 aa8.06□□□□□ -1.12
SCN1A-211ENST00000635893 MEN1O00255 615 aa8.05□□□□□ -1.12
SCN1A-211ENST00000635893 RHOQP17081 205 aa8.05□□□□□ -1.12
SCN1A-211ENST00000635893 CUEDC1Q9NWM3 386 aaPredicted RBP8.05□□□□□ -1.12
SCN1A-211ENST00000635893 A0A1W2PRU2 124 aa8.04□□□□□ -1.12
SCN1A-211ENST00000635893 WHAMMQ8TF30 809 aa8.04□□□□□ -1.12
SCN1A-211ENST00000635893 GMCL1Q96IK5 515 aa8.04□□□□□ -1.12
SCN1A-211ENST00000635893 APBB1O00213 710 aa8.03□□□□□ -1.12
SCN1A-211ENST00000635893 ARHGEF15O94989 841 aa8.03□□□□□ -1.12
SCN1A-211ENST00000635893 ADAMTS2O95450 1211 aa8.03□□□□□ -1.12
SCN1A-211ENST00000635893 CYP2U1Q7Z449 544 aa8.03□□□□□ -1.12
SCN1A-211ENST00000635893 TMEM151AQ8N4L1 468 aa8.03□□□□□ -1.12
SCN1A-211ENST00000635893 MTMR14Q8NCE2 650 aa8.03□□□□□ -1.12
SCN1A-211ENST00000635893 NLRP3Q96P20 1036 aa8.03□□□□□ -1.12
SCN1A-211ENST00000635893 NDUFB9Q9Y6M9 179 aa8.03□□□□□ -1.12
SCN1A-211ENST00000635893 GDF11O95390 407 aa8.02□□□□□ -1.13
SCN1A-211ENST00000635893 RASSF7Q02833 373 aa8.02□□□□□ -1.13
SCN1A-211ENST00000635893 SRSF11Q05519 484 aaKnown RBP8.02□□□□□ -1.13
SCN1A-211ENST00000635893 CLN3Q13286 438 aa8.02□□□□□ -1.13
SCN1A-211ENST00000635893 TRIM22Q8IYM9 498 aa8.02□□□□□ -1.13
SCN1A-211ENST00000635893 ESF1Q9H501 851 aaKnown RBP8.02□□□□□ -1.13
SCN1A-211ENST00000635893 PCDHB11Q9Y5F2 797 aa8.02□□□□□ -1.13
SCN1A-211ENST00000635893 GPR37L1O60883 481 aa8.01□□□□□ -1.13
SCN1A-211ENST00000635893 SCTRP47872 440 aa8.01□□□□□ -1.13
SCN1A-211ENST00000635893 GAS6Q14393 721 aa8.01□□□□□ -1.13
SCN1A-211ENST00000635893 SLC27A3Q5K4L6 730 aa8.01□□□□□ -1.13
SCN1A-211ENST00000635893 ZNF837Q96EG3 531 aaPredicted RBP8.01□□□□□ -1.13
SCN1A-211ENST00000635893 GRIP2Q9C0E4 1043 aa8.01□□□□□ -1.13
SCN1A-211ENST00000635893 DYRK1BQ9Y463 629 aa8.01□□□□□ -1.13
SCN1A-211ENST00000635893 TRAK2O60296 914 aa8□□□□□ -1.13
SCN1A-211ENST00000635893 POU4F2Q12837 409 aa8□□□□□ -1.13
SCN1A-211ENST00000635893 FOXR1Q6PIV2 292 aa8□□□□□ -1.13
SCN1A-211ENST00000635893 KCTD17Q8N5Z5 321 aa8□□□□□ -1.13
SCN1A-211ENST00000635893 OSBPL3Q9H4L5 887 aa8□□□□□ -1.13
SCN1A-211ENST00000635893 H7C1W4 665 aa7.99□□□□□ -1.13
SCN1A-211ENST00000635893 MARSP56192 900 aaKnown RBP7.99□□□□□ -1.13
SCN1A-211ENST00000635893 DBN1Q16643 649 aa7.99□□□□□ -1.13
SCN1A-211ENST00000635893 WDR44Q5JSH3 913 aa7.99□□□□□ -1.13
SCN1A-211ENST00000635893 LYPD4Q6UWN0 246 aa7.99□□□□□ -1.13
SCN1A-211ENST00000635893 RIPOR1Q6ZS17 1223 aa7.99□□□□□ -1.13
SCN1A-211ENST00000635893 SNRKQ9NRH2 765 aa7.99□□□□□ -1.13
SCN1A-211ENST00000635893 SPATA31C2B4DYI2 1134 aa7.98□□□□□ -1.13
SCN1A-211ENST00000635893 MAP3K10Q02779 954 aa7.98□□□□□ -1.13
SCN1A-211ENST00000635893 NBPF10Q6P3W6 841 aaKnown RBP7.98□□□□□ -1.13
SCN1A-211ENST00000635893 NBPF15Q8N660 670 aa7.98□□□□□ -1.13
SCN1A-211ENST00000635893 ARHGEF10LQ9HCE6 1279 aa7.98□□□□□ -1.13
SCN1A-211ENST00000635893 MBIPQ9NS73 344 aa7.98□□□□□ -1.13
SCN1A-211ENST00000635893 GNRH1P01148 92 aa7.97□□□□□ -1.13
SCN1A-211ENST00000635893 SCARF2Q96GP6 870 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-211ENST00000635893 GAS2L1Q99501 681 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-211ENST00000635893 GPR25O00155 361 aa7.96□□□□□ -1.14
SCN1A-211ENST00000635893 CELA2BP08218 269 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-211ENST00000635893 ENAMQ9NRM1 1142 aa7.96□□□□□ -1.14
SCN1A-211ENST00000635893 CEP126Q9P2H0 1117 aa7.96□□□□□ -1.14
SCN1A-211ENST00000635893 MYCP01106 439 aaPredicted RBP7.95□□□□□ -1.14
SCN1A-211ENST00000635893 IRS1P35568 1242 aa7.95□□□□□ -1.14
SCN1A-211ENST00000635893 TAS1R3Q7RTX0 852 aa7.95□□□□□ -1.14
SCN1A-211ENST00000635893 GTPBP3Q969Y2 492 aaKnown RBP7.95□□□□□ -1.14
SCN1A-211ENST00000635893 TRERF1Q96PN7 1200 aa7.95□□□□□ -1.14
SCN1A-211ENST00000635893 ESYT1Q9BSJ8 1104 aa7.95□□□□□ -1.14
SCN1A-211ENST00000635893 TIMMDC1Q9NPL8 285 aa7.95□□□□□ -1.14
SCN1A-211ENST00000635893 IGF1RP08069 1367 aa7.95□□□□□ -1.14
SCN1A-211ENST00000635893 WASLO00401 505 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-211ENST00000635893 KANK3Q6NY19 840 aa7.94□□□□□ -1.14
SCN1A-211ENST00000635893 CNKSR1Q969H4 720 aa7.94□□□□□ -1.14
SCN1A-211ENST00000635893 RAB6BQ9NRW1 208 aa7.94□□□□□ -1.14
SCN1A-211ENST00000635893 F11P03951 625 aa7.93□□□□□ -1.14
SCN1A-211ENST00000635893 CENPCQ03188 943 aa7.93□□□□□ -1.14
SCN1A-211ENST00000635893 CCDC85AQ96PX6 553 aaPredicted RBP7.93□□□□□ -1.14
SCN1A-211ENST00000635893 PRM3Q9NNZ6 103 aa7.93□□□□□ -1.14
SCN1A-211ENST00000635893 DNMT3AQ9Y6K1 912 aaPredicted RBP7.93□□□□□ -1.14
SCN1A-211ENST00000635893 IL2RAP01589 272 aa7.92□□□□□ -1.14
SCN1A-211ENST00000635893 CDCA7Q9BWT1 371 aaPredicted RBP7.92□□□□□ -1.14
SCN1A-211ENST00000635893 NUCKS1Q9H1E3 243 aaKnown RBP7.92□□□□□ -1.14
SCN1A-211ENST00000635893 BCRP11274 1271 aa7.91□□□□□ -1.14
SCN1A-211ENST00000635893 EIF4G2P78344 907 aaKnown RBP eCLIP7.91□□□□□ -1.14
SCN1A-211ENST00000635893 XAGE2Q96GT9 111 aa7.91□□□□□ -1.14
SCN1A-211ENST00000635893 ZSCAN10Q96SZ4 725 aaPredicted RBP7.91□□□□□ -1.14
SCN1A-211ENST00000635893 NSFL1CQ9UNZ2 370 aaKnown RBP7.91□□□□□ -1.14
SCN1A-211ENST00000635893 TBC1D2BQ9UPU7 963 aa7.91□□□□□ -1.14
SCN1A-211ENST00000635893 HRH3Q9Y5N1 445 aa7.91□□□□□ -1.14
SCN1A-211ENST00000635893 MX2P20592 715 aa7.9□□□□□ -1.14
SCN1A-211ENST00000635893 GTF2E1P29083 439 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-211ENST00000635893 USP4Q13107 963 aa7.89□□□□□ -1.15
SCN1A-211ENST00000635893 SUZ12Q15022 739 aaKnown RBP7.89□□□□□ -1.15
SCN1A-211ENST00000635893 ESCO1Q5FWF5 840 aa7.89□□□□□ -1.15
SCN1A-211ENST00000635893 PHTF2Q8N3S3 785 aa7.89□□□□□ -1.15
SCN1A-211ENST00000635893 ACDQ96AP0 544 aa7.89□□□□□ -1.15
SCN1A-211ENST00000635893 FHDC1Q9C0D6 1143 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-211ENST00000635893 LRRC4BQ9NT99 713 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms