RNA–Protein interactions for RNA: ENST00000635675.2

LINC00339-210, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-210ENST00000635675 TRIM37O94972 964 aa13.13□□□□□ -0.31
LINC00339-210ENST00000635675 RALBP1Q15311 655 aa13.13□□□□□ -0.31
LINC00339-210ENST00000635675 DDX54Q8TDD1 881 aaKnown RBP13.13□□□□□ -0.31
LINC00339-210ENST00000635675 SHANK3Q9BYB0 1731 aa13.12□□□□□ -0.31
LINC00339-210ENST00000635675 KDRP35968 1356 aa13.12□□□□□ -0.31
LINC00339-210ENST00000635675 AEBP1Q8IUX7 1158 aa13.12□□□□□ -0.31
LINC00339-210ENST00000635675 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.12□□□□□ -0.31
LINC00339-210ENST00000635675 SBF2Q86WG5 1849 aa13.11□□□□□ -0.31
LINC00339-210ENST00000635675 PLEKHG2Q9H7P9 1386 aa13.11□□□□□ -0.31
LINC00339-210ENST00000635675 SULT6B1Q6IMI4 303 aa13.11□□□□□ -0.31
LINC00339-210ENST00000635675 CFAP53Q96M91 514 aa13.11□□□□□ -0.31
LINC00339-210ENST00000635675 SF3B2Q13435 895 aaKnown RBP13.1□□□□□ -0.31
LINC00339-210ENST00000635675 PTF1AQ7RTS3 328 aa13.1□□□□□ -0.31
LINC00339-210ENST00000635675 PKD1L3Q7Z443 1732 aa13.09□□□□□ -0.31
LINC00339-210ENST00000635675 CYP27B1O15528 508 aa13.09□□□□□ -0.31
LINC00339-210ENST00000635675 BCL11BQ9C0K0 894 aaPredicted RBP13.09□□□□□ -0.31
LINC00339-210ENST00000635675 SPG7Q9UQ90 795 aa13.09□□□□□ -0.31
LINC00339-210ENST00000635675 TNS1Q9HBL0 1735 aaKnown RBP13.09□□□□□ -0.31
LINC00339-210ENST00000635675 PCDH11XQ9BZA7 1347 aa13.09□□□□□ -0.31
LINC00339-210ENST00000635675 PCDH11YQ9BZA8 1340 aa13.09□□□□□ -0.31
LINC00339-210ENST00000635675 DEFB132Q7Z7B7 95 aa13.08□□□□□ -0.32
LINC00339-210ENST00000635675 PRKRIP1Q9H875 184 aaPredicted RBP13.08□□□□□ -0.32
LINC00339-210ENST00000635675 KCNQ2O43526 872 aa13.07□□□□□ -0.32
LINC00339-210ENST00000635675 APBA3O96018 575 aa13.07□□□□□ -0.32
LINC00339-210ENST00000635675 HMOX1P09601 288 aa13.07□□□□□ -0.32
LINC00339-210ENST00000635675 U2SURPO15042 1029 aaKnown RBP13.06□□□□□ -0.32
LINC00339-210ENST00000635675 BAG6P46379 1132 aa13.06□□□□□ -0.32
LINC00339-210ENST00000635675 NKX1-1Q15270 411 aaPredicted RBP13.06□□□□□ -0.32
LINC00339-210ENST00000635675 AMOTQ4VCS5 1084 aa13.06□□□□□ -0.32
LINC00339-210ENST00000635675 PLEKHO1Q53GL0 409 aaPredicted RBP13.06□□□□□ -0.32
LINC00339-210ENST00000635675 ACSBG1Q96GR2 724 aa13.06□□□□□ -0.32
LINC00339-210ENST00000635675 NUDCQ9Y266 331 aa13.06□□□□□ -0.32
LINC00339-210ENST00000635675 MYBBP1AQ9BQG0 1328 aaKnown RBP13.06□□□□□ -0.32
LINC00339-210ENST00000635675 KAT6BQ8WYB5 2073 aa13.06□□□□□ -0.32
LINC00339-210ENST00000635675 EN1Q05925 392 aaPredicted RBP13.05□□□□□ -0.32
LINC00339-210ENST00000635675 CAMKK2Q96RR4 588 aa13.05□□□□□ -0.32
LINC00339-210ENST00000635675 NHSQ6T4R5 1651 aa13.05□□□□□ -0.32
LINC00339-210ENST00000635675 PHKG2P15735 406 aa13.05□□□□□ -0.32
LINC00339-210ENST00000635675 IFNL2Q8IZJ0 200 aa13.05□□□□□ -0.32
LINC00339-210ENST00000635675 PLSCR1O15162 318 aa13.04□□□□□ -0.32
LINC00339-210ENST00000635675 PRIM1P49642 420 aaKnown RBP13.04□□□□□ -0.32
LINC00339-210ENST00000635675 U2AF1L5P0DN76 240 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-210ENST00000635675 U2AF1Q01081 240 aaKnown RBP eCLIP13.03□□□□□ -0.32
LINC00339-210ENST00000635675 EZH2Q15910 746 aaKnown RBP13.03□□□□□ -0.32
LINC00339-210ENST00000635675 ZNF530Q6P9A1 599 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-210ENST00000635675 RSPH6AQ9H0K4 717 aa13.03□□□□□ -0.32
LINC00339-210ENST00000635675 DOT1LQ8TEK3 1739 aa13.02□□□□□ -0.32
LINC00339-210ENST00000635675 MSH5O43196 834 aa13.02□□□□□ -0.33
LINC00339-210ENST00000635675 FCHSD2O94868 740 aa13.02□□□□□ -0.33
LINC00339-210ENST00000635675 BTAF1O14981 1849 aa13.01□□□□□ -0.33
LINC00339-210ENST00000635675 HSP90AB1P08238 724 aaKnown RBP13.01□□□□□ -0.33
LINC00339-210ENST00000635675 MTHFSDQ2M296 383 aaKnown RBP13.01□□□□□ -0.33
LINC00339-210ENST00000635675 SYTL4Q96C24 671 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-210ENST00000635675 RGPD3A6NKT7 1758 aaPredicted RBP13□□□□□ -0.33
LINC00339-210ENST00000635675 RGPD4Q7Z3J3 1758 aa13□□□□□ -0.33
LINC00339-210ENST00000635675 TOGARAM1Q9Y4F4 1720 aa13□□□□□ -0.33
LINC00339-210ENST00000635675 PRKAR2BP31323 418 aa13□□□□□ -0.33
LINC00339-210ENST00000635675 PROM2Q8N271 834 aa13□□□□□ -0.33
LINC00339-210ENST00000635675 DCAF5Q96JK2 942 aa13□□□□□ -0.33
LINC00339-210ENST00000635675 PHACTR3Q96KR7 559 aa13□□□□□ -0.33
LINC00339-210ENST00000635675 AKAP4Q5JQC9 854 aa12.99□□□□□ -0.33
LINC00339-210ENST00000635675 C1orf141Q5JVX7 400 aa12.99□□□□□ -0.33
LINC00339-210ENST00000635675 ITGB4P16144 1822 aa12.99□□□□□ -0.33
LINC00339-210ENST00000635675 MPRIPQ6WCQ1 1025 aa12.98□□□□□ -0.33
LINC00339-210ENST00000635675 PIGBQ92521 554 aa12.98□□□□□ -0.33
LINC00339-210ENST00000635675 KDM6AO15550 1401 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-210ENST00000635675 RREB1Q92766 1687 aa12.97□□□□□ -0.33
LINC00339-210ENST00000635675 ERVV-2B6SEH9 535 aa12.97□□□□□ -0.33
LINC00339-210ENST00000635675 ANP32CO43423 234 aa12.97□□□□□ -0.33
LINC00339-210ENST00000635675 TXNRD1Q16881 649 aa12.96□□□□□ -0.33
LINC00339-210ENST00000635675 GAS2L2Q8NHY3 880 aa12.96□□□□□ -0.33
LINC00339-210ENST00000635675 PLEKHF1Q96S99 279 aa12.96□□□□□ -0.33
LINC00339-210ENST00000635675 LGR6Q9HBX8 967 aa12.96□□□□□ -0.34
LINC00339-210ENST00000635675 TMOD3Q9NYL9 352 aa12.96□□□□□ -0.34
LINC00339-210ENST00000635675 SCN11AQ9UI33 1791 aa12.95□□□□□ -0.34
LINC00339-210ENST00000635675 GNAT3A8MTJ3 354 aa12.95□□□□□ -0.34
LINC00339-210ENST00000635675 RNMTO43148 476 aaKnown RBP12.95□□□□□ -0.34
LINC00339-210ENST00000635675 CCDC184Q52MB2 194 aa12.95□□□□□ -0.34
LINC00339-210ENST00000635675 NUP188Q5SRE5 1749 aa12.94□□□□□ -0.34
LINC00339-210ENST00000635675 ADAMTS7Q9UKP4 1686 aa12.94□□□□□ -0.34
LINC00339-210ENST00000635675 CABP4P57796 275 aa12.94□□□□□ -0.34
LINC00339-210ENST00000635675 SLC27A3Q5K4L6 730 aa12.94□□□□□ -0.34
LINC00339-210ENST00000635675 NFATC2IPQ8NCF5 419 aa12.94□□□□□ -0.34
LINC00339-210ENST00000635675 PNNQ9H307 717 aaKnown RBP12.94□□□□□ -0.34
LINC00339-210ENST00000635675 LRRC4BQ9NT99 713 aa12.94□□□□□ -0.34
LINC00339-210ENST00000635675 LY75O60449 1722 aa12.94□□□□□ -0.34
LINC00339-210ENST00000635675 MAP3K5Q99683 1374 aa12.93□□□□□ -0.34
LINC00339-210ENST00000635675 IL17REQ8NFR9 667 aa12.93□□□□□ -0.34
LINC00339-210ENST00000635675 SMARCC1Q92922 1105 aaPredicted RBP12.93□□□□□ -0.34
LINC00339-210ENST00000635675 ATG3Q9NT62 314 aa12.93□□□□□ -0.34
LINC00339-210ENST00000635675 ASAP1Q9ULH1 1129 aa12.93□□□□□ -0.34
LINC00339-210ENST00000635675 ADAMTS8Q9UP79 889 aa12.93□□□□□ -0.34
LINC00339-210ENST00000635675 WDR43Q15061 677 aaKnown RBP eCLIP12.92□□□□□ -0.34
LINC00339-210ENST00000635675 NBPF14Q5TI25 921 aa12.92□□□□□ -0.34
LINC00339-210ENST00000635675 SLC52A2Q9HAB3 445 aa12.92□□□□□ -0.34
LINC00339-210ENST00000635675 PALLDQ8WX93 1383 aa12.92□□□□□ -0.34
LINC00339-210ENST00000635675 VIRMAQ69YN4 1812 aaKnown RBP12.91□□□□□ -0.34
LINC00339-210ENST00000635675 NEFMP07197 916 aa12.91□□□□□ -0.34
LINC00339-210ENST00000635675 KCNQ4P56696 695 aa12.91□□□□□ -0.34
LINC00339-210ENST00000635675 MRC1P22897 1456 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms