RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 TRIM35Q9UPQ4 493 aa19.46■□□□□ 0.71
LIMS4-203ENST00000632758 AMOTQ4VCS5 1084 aa19.45■□□□□ 0.7
LIMS4-203ENST00000632758 GAS2L2Q8NHY3 880 aa19.45■□□□□ 0.7
LIMS4-203ENST00000632758 QTRT2Q9H974 415 aaKnown RBP19.45■□□□□ 0.7
LIMS4-203ENST00000632758 THRAP3Q9Y2W1 955 aaKnown RBP19.45■□□□□ 0.7
LIMS4-203ENST00000632758 TRPC5Q9UL62 973 aaPredicted RBP19.44■□□□□ 0.7
LIMS4-203ENST00000632758 ZNF530Q6P9A1 599 aaPredicted RBP19.44■□□□□ 0.7
LIMS4-203ENST00000632758 WWC1Q8IX03 1113 aa19.44■□□□□ 0.7
LIMS4-203ENST00000632758 ZCRB1Q8TBF4 217 aaKnown RBP19.44■□□□□ 0.7
LIMS4-203ENST00000632758 GJD4Q96KN9 370 aaPredicted RBP19.44■□□□□ 0.7
LIMS4-203ENST00000632758 PHF23Q9BUL5 403 aaPredicted RBP19.44■□□□□ 0.7
LIMS4-203ENST00000632758 ZBED9Q6R2W3 1325 aa19.44■□□□□ 0.7
LIMS4-203ENST00000632758 OVOS2A0A0G2JMS6 1433 aa19.43■□□□□ 0.7
LIMS4-203ENST00000632758 DISP2A7MBM2 1401 aa19.43■□□□□ 0.7
LIMS4-203ENST00000632758 DCTN1Q14203 1278 aa19.43■□□□□ 0.7
LIMS4-203ENST00000632758 FAM98CQ17RN3 349 aaKnown RBP19.43■□□□□ 0.7
LIMS4-203ENST00000632758 BARGINQ6ZT62 677 aa19.43■□□□□ 0.7
LIMS4-203ENST00000632758 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.43■□□□□ 0.7
LIMS4-203ENST00000632758 SPG7Q9UQ90 795 aa19.43■□□□□ 0.7
LIMS4-203ENST00000632758 ATRNO75882 1429 aa19.43■□□□□ 0.7
LIMS4-203ENST00000632758 CCDC27Q2M243 656 aa19.41■□□□□ 0.7
LIMS4-203ENST00000632758 NCBP3Q53F19 620 aaKnown RBP19.41■□□□□ 0.7
LIMS4-203ENST00000632758 THUMPD2Q9BTF0 503 aaKnown RBP19.41■□□□□ 0.7
LIMS4-203ENST00000632758 ZNF521Q96K83 1311 aa19.41■□□□□ 0.7
LIMS4-203ENST00000632758 CYP27B1O15528 508 aa19.4■□□□□ 0.7
LIMS4-203ENST00000632758 NGEFQ8N5V2 710 aa19.4■□□□□ 0.7
LIMS4-203ENST00000632758 GNAT3A8MTJ3 354 aa19.4■□□□□ 0.7
LIMS4-203ENST00000632758 AKAP4Q5JQC9 854 aa19.4■□□□□ 0.7
LIMS4-203ENST00000632758 ZNF772Q68DY9 489 aaPredicted RBP19.4■□□□□ 0.7
LIMS4-203ENST00000632758 MCM10Q7L590 875 aa19.4■□□□□ 0.7
LIMS4-203ENST00000632758 DDX54Q8TDD1 881 aaKnown RBP19.4■□□□□ 0.7
LIMS4-203ENST00000632758 RGS17Q9UGC6 210 aaPredicted RBP19.4■□□□□ 0.7
LIMS4-203ENST00000632758 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.39■□□□□ 0.69
LIMS4-203ENST00000632758 EXOC5O00471 708 aa19.39■□□□□ 0.69
LIMS4-203ENST00000632758 PHKG2P15735 406 aa19.39■□□□□ 0.69
LIMS4-203ENST00000632758 CDCA7Q9BWT1 371 aaPredicted RBP19.39■□□□□ 0.69
LIMS4-203ENST00000632758 C1orf141Q5JVX7 400 aa19.38■□□□□ 0.69
LIMS4-203ENST00000632758 MPRIPQ6WCQ1 1025 aa19.38■□□□□ 0.69
LIMS4-203ENST00000632758 IFNL2Q8IZJ0 200 aa19.38■□□□□ 0.69
LIMS4-203ENST00000632758 IL17REQ8NFR9 667 aa19.38■□□□□ 0.69
LIMS4-203ENST00000632758 CDCA7LQ96GN5 454 aa19.38■□□□□ 0.69
LIMS4-203ENST00000632758 LGR6Q9HBX8 967 aa19.38■□□□□ 0.69
LIMS4-203ENST00000632758 MAP3K5Q99683 1374 aa19.37■□□□□ 0.69
LIMS4-203ENST00000632758 PLEKHG2Q9H7P9 1386 aa19.37■□□□□ 0.69
LIMS4-203ENST00000632758 RTF1Q92541 710 aaKnown RBP19.37■□□□□ 0.69
LIMS4-203ENST00000632758 SPINK5Q9NQ38 1064 aaPredicted RBP19.37■□□□□ 0.69
LIMS4-203ENST00000632758 HTATSF1O43719 755 aaKnown RBP19.36■□□□□ 0.69
LIMS4-203ENST00000632758 LMOD3Q0VAK6 560 aa19.36■□□□□ 0.69
LIMS4-203ENST00000632758 DDB1Q16531 1140 aa19.36■□□□□ 0.69
LIMS4-203ENST00000632758 GLI3P10071 1580 aa19.36■□□□□ 0.69
LIMS4-203ENST00000632758 WDR63Q8IWG1 891 aa19.36■□□□□ 0.69
LIMS4-203ENST00000632758 PCDH11XQ9BZA7 1347 aa19.35■□□□□ 0.69
LIMS4-203ENST00000632758 PCDH11YQ9BZA8 1340 aa19.35■□□□□ 0.69
LIMS4-203ENST00000632758 A0A0G2JS52 829 aa19.35■□□□□ 0.69
LIMS4-203ENST00000632758 ONECUT3O60422 494 aaPredicted RBP19.35■□□□□ 0.69
LIMS4-203ENST00000632758 MYT1Q01538 1121 aa19.35■□□□□ 0.69
LIMS4-203ENST00000632758 PARP4Q9UKK3 1724 aaKnown RBP19.34■□□□□ 0.69
LIMS4-203ENST00000632758 RNMTO43148 476 aaKnown RBP19.34■□□□□ 0.69
LIMS4-203ENST00000632758 GOLGA2Q08379 1002 aa19.34■□□□□ 0.69
LIMS4-203ENST00000632758 POTEAQ6S8J7 498 aa19.33■□□□□ 0.69
LIMS4-203ENST00000632758 PKD1L3Q7Z443 1732 aa19.33■□□□□ 0.68
LIMS4-203ENST00000632758 DLG5Q8TDM6 1919 aa19.32■□□□□ 0.68
LIMS4-203ENST00000632758 RBM6P78332 1123 aaKnown RBP19.32■□□□□ 0.68
LIMS4-203ENST00000632758 SLFN5Q08AF3 891 aa19.32■□□□□ 0.68
LIMS4-203ENST00000632758 NKX1-1Q15270 411 aaPredicted RBP19.32■□□□□ 0.68
LIMS4-203ENST00000632758 SEPT12Q8IYM1 358 aa19.32■□□□□ 0.68
LIMS4-203ENST00000632758 MARCH10Q8NA82 808 aaPredicted RBP19.32■□□□□ 0.68
LIMS4-203ENST00000632758 TNS2Q63HR2 1409 aa19.31■□□□□ 0.68
LIMS4-203ENST00000632758 PDE3BQ13370 1112 aa19.31■□□□□ 0.68
LIMS4-203ENST00000632758 LAS1LQ9Y4W2 734 aaKnown RBP19.31■□□□□ 0.68
LIMS4-203ENST00000632758 KDM6AO15550 1401 aaPredicted RBP19.3■□□□□ 0.68
LIMS4-203ENST00000632758 CEMIPQ8WUJ3 1361 aa19.3■□□□□ 0.68
LIMS4-203ENST00000632758 DCAF5Q96JK2 942 aa19.3■□□□□ 0.68
LIMS4-203ENST00000632758 WNK3Q9BYP7 1800 aa19.29■□□□□ 0.68
LIMS4-203ENST00000632758 HSP90AB1P08238 724 aaKnown RBP19.29■□□□□ 0.68
LIMS4-203ENST00000632758 MIS18AQ9NYP9 233 aa19.29■□□□□ 0.68
LIMS4-203ENST00000632758 SHANK3Q9BYB0 1731 aa19.28■□□□□ 0.68
LIMS4-203ENST00000632758 RXRBP28702 533 aa19.28■□□□□ 0.68
LIMS4-203ENST00000632758 IL16Q14005 1332 aa19.28■□□□□ 0.68
LIMS4-203ENST00000632758 E9PSI1 815 aa19.27■□□□□ 0.68
LIMS4-203ENST00000632758 ZNF853P0CG23 659 aa19.27■□□□□ 0.68
LIMS4-203ENST00000632758 CALD1Q05682 793 aaKnown RBP19.27■□□□□ 0.68
LIMS4-203ENST00000632758 TRMT2AQ8IZ69 625 aaKnown RBP19.27■□□□□ 0.68
LIMS4-203ENST00000632758 LRRC37A3O60309 1634 aa19.27■□□□□ 0.68
LIMS4-203ENST00000632758 DUSP27Q5VZP5 1158 aa19.27■□□□□ 0.67
LIMS4-203ENST00000632758 TSR2Q969E8 191 aaKnown RBP19.27■□□□□ 0.67
LIMS4-203ENST00000632758 CFAP44Q96MT7 982 aa19.27■□□□□ 0.67
LIMS4-203ENST00000632758 THSD7AQ9UPZ6 1657 aa19.26■□□□□ 0.67
LIMS4-203ENST00000632758 TEFQ10587 303 aa19.26■□□□□ 0.67
LIMS4-203ENST00000632758 TAF7Q15545 349 aaPredicted RBP19.26■□□□□ 0.67
LIMS4-203ENST00000632758 FAM182BQ5T319 152 aa19.26■□□□□ 0.67
LIMS4-203ENST00000632758 NFATC2IPQ8NCF5 419 aa19.26■□□□□ 0.67
LIMS4-203ENST00000632758 IFT57Q9NWB7 429 aa19.26■□□□□ 0.67
LIMS4-203ENST00000632758 CHL1O00533 1208 aa19.25■□□□□ 0.67
LIMS4-203ENST00000632758 GNAI1P63096 354 aa19.25■□□□□ 0.67
LIMS4-203ENST00000632758 SLC52A2Q9HAB3 445 aa19.25■□□□□ 0.67
LIMS4-203ENST00000632758 CABP4P57796 275 aa19.24■□□□□ 0.67
LIMS4-203ENST00000632758 MBIPQ9NS73 344 aa19.24■□□□□ 0.67
LIMS4-203ENST00000632758 ERVV-2B6SEH9 535 aa19.23■□□□□ 0.67
LIMS4-203ENST00000632758 MYH16Q9H6N6 1097 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms