RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 MIS18AQ9NYP9 233 aa25.03■■□□□ 1.6
CHRNA4-209ENST00000627000 KCNH5Q8NCM2 988 aa25.03■■□□□ 1.6
CHRNA4-209ENST00000627000 KRT28Q7Z3Y7 464 aa25.02■■□□□ 1.6
CHRNA4-209ENST00000627000 RWDD1Q9H446 243 aaPredicted RBP25.01■■□□□ 1.59
CHRNA4-209ENST00000627000 KIF1AQ12756 1690 aa25.01■■□□□ 1.59
CHRNA4-209ENST00000627000 GCP02774 474 aa25■■□□□ 1.59
CHRNA4-209ENST00000627000 ARHGAP45Q92619 1136 aa25■■□□□ 1.59
CHRNA4-209ENST00000627000 ZBTB40Q9NUA8 1239 aa25■■□□□ 1.59
CHRNA4-209ENST00000627000 RGPD2P0DJD1 1756 aa24.99■■□□□ 1.59
CHRNA4-209ENST00000627000 SLIT3O75094 1523 aa24.99■■□□□ 1.59
CHRNA4-209ENST00000627000 NPM2Q86SE8 214 aaKnown RBP24.98■■□□□ 1.59
CHRNA4-209ENST00000627000 MST1RQ04912 1400 aa24.98■■□□□ 1.59
CHRNA4-209ENST00000627000 PHRF1Q9P1Y6 1649 aaKnown RBP24.98■■□□□ 1.59
CHRNA4-209ENST00000627000 ANP32AP39687 249 aaKnown RBP24.98■■□□□ 1.59
CHRNA4-209ENST00000627000 NBPF6Q5VWK0 638 aa24.98■■□□□ 1.59
CHRNA4-209ENST00000627000 NBPF4Q96M43 638 aa24.98■■□□□ 1.59
CHRNA4-209ENST00000627000 ATF3P18847 181 aa24.97■■□□□ 1.59
CHRNA4-209ENST00000627000 C8orf34Q49A92 452 aa24.97■■□□□ 1.59
CHRNA4-209ENST00000627000 PDZRN3Q9UPQ7 1066 aa24.97■■□□□ 1.59
CHRNA4-209ENST00000627000 KIAA0232Q92628 1395 aa24.97■■□□□ 1.59
CHRNA4-209ENST00000627000 MSH6P52701 1360 aa24.96■■□□□ 1.59
CHRNA4-209ENST00000627000 GNAT3A8MTJ3 354 aa24.96■■□□□ 1.59
CHRNA4-209ENST00000627000 DDX17Q92841 729 aaKnown RBP24.96■■□□□ 1.59
CHRNA4-209ENST00000627000 FAM161AQ3B820 660 aa24.95■■□□□ 1.59
CHRNA4-209ENST00000627000 ARHGEF25Q86VW2 580 aa24.95■■□□□ 1.59
CHRNA4-209ENST00000627000 TSPYL4Q9UJ04 414 aa24.95■■□□□ 1.59
CHRNA4-209ENST00000627000 LRRC59Q96AG4 307 aaKnown RBP24.95■■□□□ 1.58
CHRNA4-209ENST00000627000 LRRC37A3O60309 1634 aa24.95■■□□□ 1.58
CHRNA4-209ENST00000627000 ABCC4O15439 1325 aa24.94■■□□□ 1.58
CHRNA4-209ENST00000627000 USP19O94966 1318 aa24.94■■□□□ 1.58
CHRNA4-209ENST00000627000 HTATSF1O43719 755 aaKnown RBP24.94■■□□□ 1.58
CHRNA4-209ENST00000627000 MAP3K5Q99683 1374 aa24.93■■□□□ 1.58
CHRNA4-209ENST00000627000 HDAC1Q13547 482 aaPredicted RBP24.93■■□□□ 1.58
CHRNA4-209ENST00000627000 IL17REQ8NFR9 667 aa24.93■■□□□ 1.58
CHRNA4-209ENST00000627000 KDM4FA0A1W2PPD8 638 aa24.92■■□□□ 1.58
CHRNA4-209ENST00000627000 ZBTB7BO15156 539 aaPredicted RBP24.92■■□□□ 1.58
CHRNA4-209ENST00000627000 ALS2Q96Q42 1657 aa24.92■■□□□ 1.58
CHRNA4-209ENST00000627000 DCCP43146 1447 aa24.91■■□□□ 1.58
CHRNA4-209ENST00000627000 API5Q9BZZ5 524 aaKnown RBP24.91■■□□□ 1.58
CHRNA4-209ENST00000627000 NCOA3Q9Y6Q9 1424 aa24.89■■□□□ 1.58
CHRNA4-209ENST00000627000 IPO9Q96P70 1041 aaKnown RBP24.89■■□□□ 1.58
CHRNA4-209ENST00000627000 HAP1P54257 671 aaPredicted RBP24.88■■□□□ 1.57
CHRNA4-209ENST00000627000 AXIN2Q9Y2T1 843 aa24.88■■□□□ 1.57
CHRNA4-209ENST00000627000 MED1Q15648 1581 aaPredicted RBP24.88■■□□□ 1.57
CHRNA4-209ENST00000627000 C1orf115Q9H7X2 142 aa24.88■■□□□ 1.57
CHRNA4-209ENST00000627000 LMTK3Q96Q04 1460 aa24.87■■□□□ 1.57
CHRNA4-209ENST00000627000 XIRP1Q702N8 1843 aaKnown RBP24.87■■□□□ 1.57
CHRNA4-209ENST00000627000 STRCQ7RTU9 1775 aa24.87■■□□□ 1.57
CHRNA4-209ENST00000627000 RGPD5Q99666 1765 aa24.87■■□□□ 1.57
CHRNA4-209ENST00000627000 ANKRD24Q8TF21 1146 aa24.87■■□□□ 1.57
CHRNA4-209ENST00000627000 RGS12O14924 1447 aa24.87■■□□□ 1.57
CHRNA4-209ENST00000627000 CADPS2Q86UW7 1296 aa24.86■■□□□ 1.57
CHRNA4-209ENST00000627000 ZC3H6P61129 1189 aaKnown RBP24.85■■□□□ 1.57
CHRNA4-209ENST00000627000 SLC4A2P04920 1241 aa24.84■■□□□ 1.57
CHRNA4-209ENST00000627000 SMC5Q8IY18 1101 aa24.84■■□□□ 1.57
CHRNA4-209ENST00000627000 VIRMAQ69YN4 1812 aaKnown RBP24.84■■□□□ 1.57
CHRNA4-209ENST00000627000 TAF7Q15545 349 aaPredicted RBP24.83■■□□□ 1.56
CHRNA4-209ENST00000627000 NCAPD2Q15021 1401 aa24.81■■□□□ 1.56
CHRNA4-209ENST00000627000 CHMP4BQ9H444 224 aaKnown RBP24.81■■□□□ 1.56
CHRNA4-209ENST00000627000 LGR6Q9HBX8 967 aa24.81■■□□□ 1.56
CHRNA4-209ENST00000627000 NOP58Q9Y2X3 529 aaKnown RBP24.81■■□□□ 1.56
CHRNA4-209ENST00000627000 ERICH6Q7L0X2 663 aa24.81■■□□□ 1.56
CHRNA4-209ENST00000627000 G2E3Q7L622 706 aa24.81■■□□□ 1.56
CHRNA4-209ENST00000627000 INTS3Q68E01 1043 aaKnown RBP24.8■■□□□ 1.56
CHRNA4-209ENST00000627000 CEMIPQ8WUJ3 1361 aa24.8■■□□□ 1.56
CHRNA4-209ENST00000627000 PTPRCP08575 1304 aa24.8■■□□□ 1.56
CHRNA4-209ENST00000627000 NPHP3Q7Z494 1330 aa24.8■■□□□ 1.56
CHRNA4-209ENST00000627000 CABLES1Q8TDN4 633 aa24.79■■□□□ 1.56
CHRNA4-209ENST00000627000 CAMTA1Q9Y6Y1 1673 aa24.79■■□□□ 1.56
CHRNA4-209ENST00000627000 ZNF530Q6P9A1 599 aaPredicted RBP24.78■■□□□ 1.56
CHRNA4-209ENST00000627000 LMO7Q8WWI1 1683 aa24.78■■□□□ 1.56
CHRNA4-209ENST00000627000 SIRT2Q8IXJ6 389 aa24.78■■□□□ 1.56
CHRNA4-209ENST00000627000 PXDNQ92626 1479 aa24.77■■□□□ 1.56
CHRNA4-209ENST00000627000 PLEKHO1Q53GL0 409 aaPredicted RBP24.77■■□□□ 1.56
CHRNA4-209ENST00000627000 NECTIN2Q92692 538 aa24.77■■□□□ 1.56
CHRNA4-209ENST00000627000 FAM208AQ9UK61 1670 aaKnown RBP24.77■■□□□ 1.56
CHRNA4-209ENST00000627000 ERBB3P21860 1342 aa24.76■■□□□ 1.55
CHRNA4-209ENST00000627000 TNS3Q68CZ2 1445 aa24.76■■□□□ 1.55
CHRNA4-209ENST00000627000 BABAM1Q9NWV8 329 aa24.76■■□□□ 1.55
CHRNA4-209ENST00000627000 ZNF335Q9H4Z2 1342 aaPredicted RBP24.76■■□□□ 1.55
CHRNA4-209ENST00000627000 AKAP4Q5JQC9 854 aa24.76■■□□□ 1.55
CHRNA4-209ENST00000627000 ZBTB47Q9UFB7 747 aaPredicted RBP24.76■■□□□ 1.55
CHRNA4-209ENST00000627000 MPRIPQ6WCQ1 1025 aa24.75■■□□□ 1.55
CHRNA4-209ENST00000627000 SEC24BO95487 1268 aa24.74■■□□□ 1.55
CHRNA4-209ENST00000627000 F6X3S4 739 aa24.74■■□□□ 1.55
CHRNA4-209ENST00000627000 NUCB1Q02818 461 aa24.74■■□□□ 1.55
CHRNA4-209ENST00000627000 AMOTQ4VCS5 1084 aa24.74■■□□□ 1.55
CHRNA4-209ENST00000627000 BRINP3Q76B58 766 aa24.73■■□□□ 1.55
CHRNA4-209ENST00000627000 STK31Q9BXU1 1019 aa24.73■■□□□ 1.55
CHRNA4-209ENST00000627000 CCDC30Q5VVM6 783 aa24.73■■□□□ 1.55
CHRNA4-209ENST00000627000 COL18A1P39060 1754 aa24.73■■□□□ 1.55
CHRNA4-209ENST00000627000 SPATA31A3Q5VYP0 1347 aa24.72■■□□□ 1.55
CHRNA4-209ENST00000627000 LNPKQ9C0E8 428 aa24.72■■□□□ 1.55
CHRNA4-209ENST00000627000 CRYBG1Q9Y4K1 1723 aa24.71■■□□□ 1.55
CHRNA4-209ENST00000627000 KDM3BQ7LBC6 1761 aa24.71■■□□□ 1.55
CHRNA4-209ENST00000627000 KCNQ3O43525 872 aa24.7■■□□□ 1.55
CHRNA4-209ENST00000627000 CHRNA2Q15822 529 aa24.7■■□□□ 1.55
CHRNA4-209ENST00000627000 C1orf141Q5JVX7 400 aa24.7■■□□□ 1.54
CHRNA4-209ENST00000627000 SLC4A10Q6U841 1118 aa24.7■■□□□ 1.54
CHRNA4-209ENST00000627000 CHD1LQ86WJ1 897 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms