RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 EMILIN1Q9Y6C2 1016 aa20.4■□□□□ 0.86
LINC00643-206ENST00000623985 KIF7Q2M1P5 1343 aa20.38■□□□□ 0.85
LINC00643-206ENST00000623985 NBPF6Q5VWK0 638 aa20.38■□□□□ 0.85
LINC00643-206ENST00000623985 PTF1AQ7RTS3 328 aa20.38■□□□□ 0.85
LINC00643-206ENST00000623985 NBPF4Q96M43 638 aa20.38■□□□□ 0.85
LINC00643-206ENST00000623985 TUBGCP6Q96RT7 1819 aa20.38■□□□□ 0.85
LINC00643-206ENST00000623985 VIRMAQ69YN4 1812 aaKnown RBP20.37■□□□□ 0.85
LINC00643-206ENST00000623985 R3HDM1Q15032 1099 aaKnown RBP20.37■□□□□ 0.85
LINC00643-206ENST00000623985 WASHC2AQ641Q2 1341 aa20.35■□□□□ 0.85
LINC00643-206ENST00000623985 TAF1LQ8IZX4 1826 aa20.35■□□□□ 0.85
LINC00643-206ENST00000623985 NBPF14Q5TI25 921 aa20.35■□□□□ 0.85
LINC00643-206ENST00000623985 USHBP1Q8N6Y0 703 aa20.35■□□□□ 0.85
LINC00643-206ENST00000623985 RAPGEF4Q8WZA2 1011 aa20.34■□□□□ 0.85
LINC00643-206ENST00000623985 ACSBG1Q96GR2 724 aa20.34■□□□□ 0.85
LINC00643-206ENST00000623985 POLKQ9UBT6 870 aa20.34■□□□□ 0.85
LINC00643-206ENST00000623985 PPM1GO15355 546 aaPredicted RBP20.33■□□□□ 0.85
LINC00643-206ENST00000623985 KCNQ2O43526 872 aa20.33■□□□□ 0.85
LINC00643-206ENST00000623985 ZCRB1Q8TBF4 217 aaKnown RBP20.33■□□□□ 0.85
LINC00643-206ENST00000623985 C5P01031 1676 aa20.32■□□□□ 0.84
LINC00643-206ENST00000623985 DDX54Q8TDD1 881 aaKnown RBP20.32■□□□□ 0.84
LINC00643-206ENST00000623985 TATP17735 454 aaPredicted RBP20.31■□□□□ 0.84
LINC00643-206ENST00000623985 KNSTRNQ9Y448 316 aa20.31■□□□□ 0.84
LINC00643-206ENST00000623985 PCDH11XQ9BZA7 1347 aa20.3■□□□□ 0.84
LINC00643-206ENST00000623985 PCDH11YQ9BZA8 1340 aa20.3■□□□□ 0.84
LINC00643-206ENST00000623985 TNNT2P45379 298 aaPredicted RBP20.3■□□□□ 0.84
LINC00643-206ENST00000623985 PLEKHG2Q9H7P9 1386 aa20.29■□□□□ 0.84
LINC00643-206ENST00000623985 TXNRD1Q16881 649 aa20.28■□□□□ 0.84
LINC00643-206ENST00000623985 PROM2Q8N271 834 aa20.28■□□□□ 0.84
LINC00643-206ENST00000623985 ANO8Q9HCE9 1232 aaPredicted RBP20.27■□□□□ 0.84
LINC00643-206ENST00000623985 MORC1Q86VD1 984 aa20.26■□□□□ 0.83
LINC00643-206ENST00000623985 COL24A1Q17RW2 1714 aa20.25■□□□□ 0.83
LINC00643-206ENST00000623985 EIF4A2Q14240 407 aaKnown RBP20.25■□□□□ 0.83
LINC00643-206ENST00000623985 AMER1Q5JTC6 1135 aaPredicted RBP20.25■□□□□ 0.83
LINC00643-206ENST00000623985 EYA1Q99502 592 aa20.25■□□□□ 0.83
LINC00643-206ENST00000623985 SCN11AQ9UI33 1791 aa20.24■□□□□ 0.83
LINC00643-206ENST00000623985 IGSF1Q8N6C5 1336 aa20.24■□□□□ 0.83
LINC00643-206ENST00000623985 SYTL4Q96C24 671 aaPredicted RBP20.23■□□□□ 0.83
LINC00643-206ENST00000623985 PRIM1P49642 420 aaKnown RBP20.22■□□□□ 0.83
LINC00643-206ENST00000623985 STK32BQ9NY57 414 aa20.21■□□□□ 0.83
LINC00643-206ENST00000623985 NPC1L1Q9UHC9 1359 aa20.21■□□□□ 0.83
LINC00643-206ENST00000623985 CYP27B1O15528 508 aa20.2■□□□□ 0.82
LINC00643-206ENST00000623985 PER1O15534 1290 aaPredicted RBP20.2■□□□□ 0.82
LINC00643-206ENST00000623985 SPG7Q9UQ90 795 aa20.2■□□□□ 0.82
LINC00643-206ENST00000623985 ZNF831Q5JPB2 1677 aa20.19■□□□□ 0.82
LINC00643-206ENST00000623985 SLC27A3Q5K4L6 730 aa20.19■□□□□ 0.82
LINC00643-206ENST00000623985 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.19■□□□□ 0.82
LINC00643-206ENST00000623985 UBR3Q6ZT12 1888 aa20.18■□□□□ 0.82
LINC00643-206ENST00000623985 SLC15A2Q16348 729 aa20.18■□□□□ 0.82
LINC00643-206ENST00000623985 C4BP0C0L5 1744 aa20.18■□□□□ 0.82
LINC00643-206ENST00000623985 LRRC4BQ9NT99 713 aa20.16■□□□□ 0.82
LINC00643-206ENST00000623985 COL5A3P25940 1745 aaPredicted RBP20.16■□□□□ 0.82
LINC00643-206ENST00000623985 NKX1-1Q15270 411 aaPredicted RBP20.15■□□□□ 0.82
LINC00643-206ENST00000623985 SPON1Q9HCB6 807 aa20.15■□□□□ 0.82
LINC00643-206ENST00000623985 KDRP35968 1356 aa20.15■□□□□ 0.82
LINC00643-206ENST00000623985 COL3A1P02461 1466 aaPredicted RBP20.14■□□□□ 0.81
LINC00643-206ENST00000623985 CC2D1BQ5T0F9 858 aaKnown RBP20.13■□□□□ 0.81
LINC00643-206ENST00000623985 PALLDQ8WX93 1383 aa20.12■□□□□ 0.81
LINC00643-206ENST00000623985 PHKG2P15735 406 aa20.12■□□□□ 0.81
LINC00643-206ENST00000623985 ZNF827Q17R98 1081 aa20.12■□□□□ 0.81
LINC00643-206ENST00000623985 IFNL2Q8IZJ0 200 aa20.12■□□□□ 0.81
LINC00643-206ENST00000623985 PDGFDQ9GZP0 370 aaPredicted RBP20.12■□□□□ 0.81
LINC00643-206ENST00000623985 ADAMTS7Q9UKP4 1686 aa20.12■□□□□ 0.81
LINC00643-206ENST00000623985 CICQ96RK0 1608 aaPredicted RBP20.12■□□□□ 0.81
LINC00643-206ENST00000623985 CCNL1Q9UK58 526 aaPredicted RBP20.11■□□□□ 0.81
LINC00643-206ENST00000623985 IL13P35225 146 aa20.1■□□□□ 0.81
LINC00643-206ENST00000623985 MTHFSP49914 203 aa20.1■□□□□ 0.81
LINC00643-206ENST00000623985 MPRIPQ6WCQ1 1025 aa20.1■□□□□ 0.81
LINC00643-206ENST00000623985 AKT1S1Q96B36 256 aa20.1■□□□□ 0.81
LINC00643-206ENST00000623985 ZBTB7AO95365 584 aa20.08■□□□□ 0.81
LINC00643-206ENST00000623985 AMOTQ4VCS5 1084 aa20.08■□□□□ 0.81
LINC00643-206ENST00000623985 AEBP1Q8IUX7 1158 aa20.08■□□□□ 0.81
LINC00643-206ENST00000623985 PPP1R1BQ9UD71 204 aaPredicted RBP20.08■□□□□ 0.81
LINC00643-206ENST00000623985 KDM6AO15550 1401 aaPredicted RBP20.08■□□□□ 0.8
LINC00643-206ENST00000623985 KCNQ4P56696 695 aa20.07■□□□□ 0.8
LINC00643-206ENST00000623985 PLEKHO1Q53GL0 409 aaPredicted RBP20.07■□□□□ 0.8
LINC00643-206ENST00000623985 SULT6B1Q6IMI4 303 aa20.07■□□□□ 0.8
LINC00643-206ENST00000623985 SMARCC1Q92922 1105 aaPredicted RBP20.07■□□□□ 0.8
LINC00643-206ENST00000623985 MTFR1LQ9H019 292 aa20.07■□□□□ 0.8
LINC00643-206ENST00000623985 SIPA1L3O60292 1781 aaPredicted RBP20.06■□□□□ 0.8
LINC00643-206ENST00000623985 HSP90AB1P08238 724 aaKnown RBP20.06■□□□□ 0.8
LINC00643-206ENST00000623985 HMGB2P26583 209 aaKnown RBP20.06■□□□□ 0.8
LINC00643-206ENST00000623985 PIGBQ92521 554 aa20.06■□□□□ 0.8
LINC00643-206ENST00000623985 TMOD3Q9NYL9 352 aa20.06■□□□□ 0.8
LINC00643-206ENST00000623985 TJP1Q07157 1748 aa20.05■□□□□ 0.8
LINC00643-206ENST00000623985 ZNF530Q6P9A1 599 aaPredicted RBP20.05■□□□□ 0.8
LINC00643-206ENST00000623985 PNPLA7Q6ZV29 1317 aa20.04■□□□□ 0.8
LINC00643-206ENST00000623985 UBR2Q8IWV8 1755 aa20.04■□□□□ 0.8
LINC00643-206ENST00000623985 DCAF5Q96JK2 942 aa20.04■□□□□ 0.8
LINC00643-206ENST00000623985 C4AP0C0L4 1744 aa20.04■□□□□ 0.8
LINC00643-206ENST00000623985 MRC1P22897 1456 aa20.04■□□□□ 0.8
LINC00643-206ENST00000623985 DIAPH1O60610 1272 aaKnown RBP20.03■□□□□ 0.8
LINC00643-206ENST00000623985 PTGER2P43116 358 aa20.03■□□□□ 0.8
LINC00643-206ENST00000623985 TFCP2L1Q9NZI6 479 aa20.03■□□□□ 0.8
LINC00643-206ENST00000623985 C1orf141Q5JVX7 400 aa20.02■□□□□ 0.8
LINC00643-206ENST00000623985 ATF5Q9Y2D1 282 aaPredicted RBP20.02■□□□□ 0.8
LINC00643-206ENST00000623985 MYH14Q7Z406 1995 aaKnown RBP20.02■□□□□ 0.8
LINC00643-206ENST00000623985 ERVV-2B6SEH9 535 aa20.01■□□□□ 0.79
LINC00643-206ENST00000623985 CNGB1Q14028 1251 aaPredicted RBP20.01■□□□□ 0.79
LINC00643-206ENST00000623985 SLC16A10Q8TF71 515 aa20.01■□□□□ 0.79
LINC00643-206ENST00000623985 CHD4Q14839 1912 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms