RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 EMILIN1Q9Y6C2 1016 aa20.4■□□□□ 0.86
LINC00643-205ENST00000623219 KIF7Q2M1P5 1343 aa20.38■□□□□ 0.85
LINC00643-205ENST00000623219 NBPF6Q5VWK0 638 aa20.38■□□□□ 0.85
LINC00643-205ENST00000623219 PTF1AQ7RTS3 328 aa20.38■□□□□ 0.85
LINC00643-205ENST00000623219 NBPF4Q96M43 638 aa20.38■□□□□ 0.85
LINC00643-205ENST00000623219 TUBGCP6Q96RT7 1819 aa20.38■□□□□ 0.85
LINC00643-205ENST00000623219 VIRMAQ69YN4 1812 aaKnown RBP20.37■□□□□ 0.85
LINC00643-205ENST00000623219 R3HDM1Q15032 1099 aaKnown RBP20.37■□□□□ 0.85
LINC00643-205ENST00000623219 WASHC2AQ641Q2 1341 aa20.35■□□□□ 0.85
LINC00643-205ENST00000623219 TAF1LQ8IZX4 1826 aa20.35■□□□□ 0.85
LINC00643-205ENST00000623219 NBPF14Q5TI25 921 aa20.35■□□□□ 0.85
LINC00643-205ENST00000623219 USHBP1Q8N6Y0 703 aa20.35■□□□□ 0.85
LINC00643-205ENST00000623219 RAPGEF4Q8WZA2 1011 aa20.34■□□□□ 0.85
LINC00643-205ENST00000623219 ACSBG1Q96GR2 724 aa20.34■□□□□ 0.85
LINC00643-205ENST00000623219 POLKQ9UBT6 870 aa20.34■□□□□ 0.85
LINC00643-205ENST00000623219 PPM1GO15355 546 aaPredicted RBP20.33■□□□□ 0.85
LINC00643-205ENST00000623219 KCNQ2O43526 872 aa20.33■□□□□ 0.85
LINC00643-205ENST00000623219 ZCRB1Q8TBF4 217 aaKnown RBP20.33■□□□□ 0.85
LINC00643-205ENST00000623219 C5P01031 1676 aa20.32■□□□□ 0.84
LINC00643-205ENST00000623219 DDX54Q8TDD1 881 aaKnown RBP20.32■□□□□ 0.84
LINC00643-205ENST00000623219 TATP17735 454 aaPredicted RBP20.31■□□□□ 0.84
LINC00643-205ENST00000623219 KNSTRNQ9Y448 316 aa20.31■□□□□ 0.84
LINC00643-205ENST00000623219 PCDH11XQ9BZA7 1347 aa20.3■□□□□ 0.84
LINC00643-205ENST00000623219 PCDH11YQ9BZA8 1340 aa20.3■□□□□ 0.84
LINC00643-205ENST00000623219 TNNT2P45379 298 aaPredicted RBP20.3■□□□□ 0.84
LINC00643-205ENST00000623219 PLEKHG2Q9H7P9 1386 aa20.29■□□□□ 0.84
LINC00643-205ENST00000623219 TXNRD1Q16881 649 aa20.28■□□□□ 0.84
LINC00643-205ENST00000623219 PROM2Q8N271 834 aa20.28■□□□□ 0.84
LINC00643-205ENST00000623219 ANO8Q9HCE9 1232 aaPredicted RBP20.27■□□□□ 0.84
LINC00643-205ENST00000623219 MORC1Q86VD1 984 aa20.26■□□□□ 0.83
LINC00643-205ENST00000623219 COL24A1Q17RW2 1714 aa20.25■□□□□ 0.83
LINC00643-205ENST00000623219 EIF4A2Q14240 407 aaKnown RBP20.25■□□□□ 0.83
LINC00643-205ENST00000623219 AMER1Q5JTC6 1135 aaPredicted RBP20.25■□□□□ 0.83
LINC00643-205ENST00000623219 EYA1Q99502 592 aa20.25■□□□□ 0.83
LINC00643-205ENST00000623219 SCN11AQ9UI33 1791 aa20.24■□□□□ 0.83
LINC00643-205ENST00000623219 IGSF1Q8N6C5 1336 aa20.24■□□□□ 0.83
LINC00643-205ENST00000623219 SYTL4Q96C24 671 aaPredicted RBP20.23■□□□□ 0.83
LINC00643-205ENST00000623219 PRIM1P49642 420 aaKnown RBP20.22■□□□□ 0.83
LINC00643-205ENST00000623219 STK32BQ9NY57 414 aa20.21■□□□□ 0.83
LINC00643-205ENST00000623219 NPC1L1Q9UHC9 1359 aa20.21■□□□□ 0.83
LINC00643-205ENST00000623219 CYP27B1O15528 508 aa20.2■□□□□ 0.82
LINC00643-205ENST00000623219 PER1O15534 1290 aaPredicted RBP20.2■□□□□ 0.82
LINC00643-205ENST00000623219 SPG7Q9UQ90 795 aa20.2■□□□□ 0.82
LINC00643-205ENST00000623219 ZNF831Q5JPB2 1677 aa20.19■□□□□ 0.82
LINC00643-205ENST00000623219 SLC27A3Q5K4L6 730 aa20.19■□□□□ 0.82
LINC00643-205ENST00000623219 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.19■□□□□ 0.82
LINC00643-205ENST00000623219 UBR3Q6ZT12 1888 aa20.18■□□□□ 0.82
LINC00643-205ENST00000623219 SLC15A2Q16348 729 aa20.18■□□□□ 0.82
LINC00643-205ENST00000623219 C4BP0C0L5 1744 aa20.18■□□□□ 0.82
LINC00643-205ENST00000623219 LRRC4BQ9NT99 713 aa20.16■□□□□ 0.82
LINC00643-205ENST00000623219 COL5A3P25940 1745 aaPredicted RBP20.16■□□□□ 0.82
LINC00643-205ENST00000623219 NKX1-1Q15270 411 aaPredicted RBP20.15■□□□□ 0.82
LINC00643-205ENST00000623219 SPON1Q9HCB6 807 aa20.15■□□□□ 0.82
LINC00643-205ENST00000623219 KDRP35968 1356 aa20.15■□□□□ 0.82
LINC00643-205ENST00000623219 COL3A1P02461 1466 aaPredicted RBP20.14■□□□□ 0.81
LINC00643-205ENST00000623219 CC2D1BQ5T0F9 858 aaKnown RBP20.13■□□□□ 0.81
LINC00643-205ENST00000623219 PALLDQ8WX93 1383 aa20.12■□□□□ 0.81
LINC00643-205ENST00000623219 PHKG2P15735 406 aa20.12■□□□□ 0.81
LINC00643-205ENST00000623219 ZNF827Q17R98 1081 aa20.12■□□□□ 0.81
LINC00643-205ENST00000623219 IFNL2Q8IZJ0 200 aa20.12■□□□□ 0.81
LINC00643-205ENST00000623219 PDGFDQ9GZP0 370 aaPredicted RBP20.12■□□□□ 0.81
LINC00643-205ENST00000623219 ADAMTS7Q9UKP4 1686 aa20.12■□□□□ 0.81
LINC00643-205ENST00000623219 CICQ96RK0 1608 aaPredicted RBP20.12■□□□□ 0.81
LINC00643-205ENST00000623219 CCNL1Q9UK58 526 aaPredicted RBP20.11■□□□□ 0.81
LINC00643-205ENST00000623219 IL13P35225 146 aa20.1■□□□□ 0.81
LINC00643-205ENST00000623219 MTHFSP49914 203 aa20.1■□□□□ 0.81
LINC00643-205ENST00000623219 MPRIPQ6WCQ1 1025 aa20.1■□□□□ 0.81
LINC00643-205ENST00000623219 AKT1S1Q96B36 256 aa20.1■□□□□ 0.81
LINC00643-205ENST00000623219 ZBTB7AO95365 584 aa20.08■□□□□ 0.81
LINC00643-205ENST00000623219 AMOTQ4VCS5 1084 aa20.08■□□□□ 0.81
LINC00643-205ENST00000623219 AEBP1Q8IUX7 1158 aa20.08■□□□□ 0.81
LINC00643-205ENST00000623219 PPP1R1BQ9UD71 204 aaPredicted RBP20.08■□□□□ 0.81
LINC00643-205ENST00000623219 KDM6AO15550 1401 aaPredicted RBP20.08■□□□□ 0.8
LINC00643-205ENST00000623219 KCNQ4P56696 695 aa20.07■□□□□ 0.8
LINC00643-205ENST00000623219 PLEKHO1Q53GL0 409 aaPredicted RBP20.07■□□□□ 0.8
LINC00643-205ENST00000623219 SULT6B1Q6IMI4 303 aa20.07■□□□□ 0.8
LINC00643-205ENST00000623219 SMARCC1Q92922 1105 aaPredicted RBP20.07■□□□□ 0.8
LINC00643-205ENST00000623219 MTFR1LQ9H019 292 aa20.07■□□□□ 0.8
LINC00643-205ENST00000623219 SIPA1L3O60292 1781 aaPredicted RBP20.06■□□□□ 0.8
LINC00643-205ENST00000623219 HSP90AB1P08238 724 aaKnown RBP20.06■□□□□ 0.8
LINC00643-205ENST00000623219 HMGB2P26583 209 aaKnown RBP20.06■□□□□ 0.8
LINC00643-205ENST00000623219 PIGBQ92521 554 aa20.06■□□□□ 0.8
LINC00643-205ENST00000623219 TMOD3Q9NYL9 352 aa20.06■□□□□ 0.8
LINC00643-205ENST00000623219 TJP1Q07157 1748 aa20.05■□□□□ 0.8
LINC00643-205ENST00000623219 ZNF530Q6P9A1 599 aaPredicted RBP20.05■□□□□ 0.8
LINC00643-205ENST00000623219 PNPLA7Q6ZV29 1317 aa20.04■□□□□ 0.8
LINC00643-205ENST00000623219 UBR2Q8IWV8 1755 aa20.04■□□□□ 0.8
LINC00643-205ENST00000623219 DCAF5Q96JK2 942 aa20.04■□□□□ 0.8
LINC00643-205ENST00000623219 C4AP0C0L4 1744 aa20.04■□□□□ 0.8
LINC00643-205ENST00000623219 MRC1P22897 1456 aa20.04■□□□□ 0.8
LINC00643-205ENST00000623219 DIAPH1O60610 1272 aaKnown RBP20.03■□□□□ 0.8
LINC00643-205ENST00000623219 PTGER2P43116 358 aa20.03■□□□□ 0.8
LINC00643-205ENST00000623219 TFCP2L1Q9NZI6 479 aa20.03■□□□□ 0.8
LINC00643-205ENST00000623219 C1orf141Q5JVX7 400 aa20.02■□□□□ 0.8
LINC00643-205ENST00000623219 ATF5Q9Y2D1 282 aaPredicted RBP20.02■□□□□ 0.8
LINC00643-205ENST00000623219 MYH14Q7Z406 1995 aaKnown RBP20.02■□□□□ 0.8
LINC00643-205ENST00000623219 ERVV-2B6SEH9 535 aa20.01■□□□□ 0.79
LINC00643-205ENST00000623219 CNGB1Q14028 1251 aaPredicted RBP20.01■□□□□ 0.79
LINC00643-205ENST00000623219 SLC16A10Q8TF71 515 aa20.01■□□□□ 0.79
LINC00643-205ENST00000623219 CHD4Q14839 1912 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms