RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 IFFO2Q5TF58 517 aa15.54■□□□□ 0.08
MSH6-215ENST00000622629 PLEKHO1Q53GL0 409 aaPredicted RBP15.54■□□□□ 0.08
MSH6-215ENST00000622629 ARHGAP45Q92619 1136 aa15.54■□□□□ 0.08
MSH6-215ENST00000622629 NPATQ14207 1427 aa15.54■□□□□ 0.08
MSH6-215ENST00000622629 HSP90AA2PQ14568 343 aaPredicted RBP15.54■□□□□ 0.08
MSH6-215ENST00000622629 FAM184AQ8NB25 1140 aa15.54■□□□□ 0.08
MSH6-215ENST00000622629 ERVK-7P63135 1459 aa15.53■□□□□ 0.08
MSH6-215ENST00000622629 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.53■□□□□ 0.08
MSH6-215ENST00000622629 ATF3P18847 181 aa15.53■□□□□ 0.08
MSH6-215ENST00000622629 MCM2P49736 904 aa15.53■□□□□ 0.08
MSH6-215ENST00000622629 CWC22Q9HCG8 908 aaKnown RBP15.53■□□□□ 0.08
MSH6-215ENST00000622629 EIF4A2Q14240 407 aaKnown RBP15.52■□□□□ 0.08
MSH6-215ENST00000622629 SIL1Q9H173 461 aa15.52■□□□□ 0.08
MSH6-215ENST00000622629 GOLGA6L6A8MZA4 724 aa15.52■□□□□ 0.08
MSH6-215ENST00000622629 PREX2Q70Z35 1606 aa15.52■□□□□ 0.08
MSH6-215ENST00000622629 PPIP5K1Q6PFW1 1433 aa15.52■□□□□ 0.08
MSH6-215ENST00000622629 MX1P20591 662 aa15.52■□□□□ 0.07
MSH6-215ENST00000622629 YTHDC2Q9H6S0 1430 aaKnown RBP15.52■□□□□ 0.07
MSH6-215ENST00000622629 FSD1Q9BTV5 496 aa15.52■□□□□ 0.07
MSH6-215ENST00000622629 LRRFIP2Q9Y608 721 aaKnown RBP15.52■□□□□ 0.07
MSH6-215ENST00000622629 FIBPO43427 364 aa15.51■□□□□ 0.07
MSH6-215ENST00000622629 FLIIQ13045 1269 aa15.51■□□□□ 0.07
MSH6-215ENST00000622629 RNF20Q5VTR2 975 aa15.51■□□□□ 0.07
MSH6-215ENST00000622629 TTC21BQ7Z4L5 1316 aa15.51■□□□□ 0.07
MSH6-215ENST00000622629 PRDM15P57071 1507 aaPredicted RBP15.51■□□□□ 0.07
MSH6-215ENST00000622629 CWC27Q6UX04 472 aaKnown RBP15.51■□□□□ 0.07
MSH6-215ENST00000622629 MPNDQ8N594 471 aa15.51■□□□□ 0.07
MSH6-215ENST00000622629 NEUROD6Q96NK8 337 aa15.51■□□□□ 0.07
MSH6-215ENST00000622629 SHROOM2Q13796 1616 aa15.5■□□□□ 0.07
MSH6-215ENST00000622629 FOSBP53539 338 aa15.5■□□□□ 0.07
MSH6-215ENST00000622629 ABCC1P33527 1531 aa15.5■□□□□ 0.07
MSH6-215ENST00000622629 NPHP1O15259 732 aa15.5■□□□□ 0.07
MSH6-215ENST00000622629 NRDCO43847 1150 aa15.5■□□□□ 0.07
MSH6-215ENST00000622629 ZBTB7BO15156 539 aaPredicted RBP15.49■□□□□ 0.07
MSH6-215ENST00000622629 FOXO3O43524 673 aa15.49■□□□□ 0.07
MSH6-215ENST00000622629 MBD3O95983 291 aa15.49■□□□□ 0.07
MSH6-215ENST00000622629 TAF7Q15545 349 aaPredicted RBP15.49■□□□□ 0.07
MSH6-215ENST00000622629 TTC22Q5TAA0 569 aa15.49■□□□□ 0.07
MSH6-215ENST00000622629 BTBD11A6QL63 1104 aa15.49■□□□□ 0.07
MSH6-215ENST00000622629 SDSP20132 328 aa15.49■□□□□ 0.07
MSH6-215ENST00000622629 SF3A1Q15459 793 aaKnown RBP15.49■□□□□ 0.07
MSH6-215ENST00000622629 SBNO2Q9Y2G9 1366 aa15.49■□□□□ 0.07
MSH6-215ENST00000622629 RIMS2Q9UQ26 1411 aa15.49■□□□□ 0.07
MSH6-215ENST00000622629 PTPRCP08575 1304 aa15.48■□□□□ 0.07
MSH6-215ENST00000622629 ESPNB1AK53 854 aa15.48■□□□□ 0.07
MSH6-215ENST00000622629 MYL6BP14649 208 aa15.48■□□□□ 0.07
MSH6-215ENST00000622629 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.48■□□□□ 0.07
MSH6-215ENST00000622629 ANXA1P04083 346 aa15.48■□□□□ 0.07
MSH6-215ENST00000622629 ANKRD44Q8N8A2 993 aa15.48■□□□□ 0.07
MSH6-215ENST00000622629 BICD2Q8TD16 824 aa15.48■□□□□ 0.07
MSH6-215ENST00000622629 PANK2Q9BZ23 570 aa15.47■□□□□ 0.07
MSH6-215ENST00000622629 ISY1Q9ULR0 285 aaKnown RBP15.47■□□□□ 0.07
MSH6-215ENST00000622629 ZC3H6P61129 1189 aaKnown RBP15.47■□□□□ 0.07
MSH6-215ENST00000622629 DDX54Q8TDD1 881 aaKnown RBP15.47■□□□□ 0.07
MSH6-215ENST00000622629 TOMM22Q9NS69 142 aa15.47■□□□□ 0.07
MSH6-215ENST00000622629 KIF3AQ9Y496 699 aa15.47■□□□□ 0.07
MSH6-215ENST00000622629 MPRIPQ6WCQ1 1025 aa15.46■□□□□ 0.07
MSH6-215ENST00000622629 ZFYVE16Q7Z3T8 1539 aa15.46■□□□□ 0.07
MSH6-215ENST00000622629 LARP6Q9BRS8 491 aaKnown RBP15.46■□□□□ 0.07
MSH6-215ENST00000622629 TRPM2O94759 1503 aa15.46■□□□□ 0.07
MSH6-215ENST00000622629 IL13P35225 146 aa15.45■□□□□ 0.06
MSH6-215ENST00000622629 CCDC173Q0VFZ6 552 aa15.45■□□□□ 0.06
MSH6-215ENST00000622629 AACSQ86V21 672 aa15.45■□□□□ 0.06
MSH6-215ENST00000622629 DNAJC2Q99543 621 aaKnown RBP15.45■□□□□ 0.06
MSH6-215ENST00000622629 FAM13BQ9NYF5 915 aa15.45■□□□□ 0.06
MSH6-215ENST00000622629 R3HCC1Q9Y3T6 440 aaKnown RBP15.45■□□□□ 0.06
MSH6-215ENST00000622629 KDM5AP29375 1690 aaKnown RBP15.45■□□□□ 0.06
MSH6-215ENST00000622629 XRCC6P12956 609 aaKnown RBP eCLIP15.44■□□□□ 0.062e-10■■□□□ 12.2
MSH6-215ENST00000622629 MTHFSDQ2M296 383 aaKnown RBP15.44■□□□□ 0.06
MSH6-215ENST00000622629 BAG4O95429 457 aaKnown RBP15.44■□□□□ 0.06
MSH6-215ENST00000622629 EVA1CP58658 441 aa15.44■□□□□ 0.06
MSH6-215ENST00000622629 DCTPP1Q9H773 170 aa15.44■□□□□ 0.06
MSH6-215ENST00000622629 SYCE3A1L190 88 aa15.44■□□□□ 0.06
MSH6-215ENST00000622629 KIF1BPQ96EK5 621 aa15.44■□□□□ 0.06
MSH6-215ENST00000622629 TRPM1Q7Z4N2 1603 aa15.44■□□□□ 0.06
MSH6-215ENST00000622629 OTUD7AQ8TE49 926 aaPredicted RBP15.44■□□□□ 0.06
MSH6-215ENST00000622629 PHF8Q9UPP1 1060 aa15.43■□□□□ 0.06
MSH6-215ENST00000622629 PLEKHM2Q8IWE5 1019 aa15.43■□□□□ 0.06
MSH6-215ENST00000622629 JAKMIP1Q96N16 626 aaKnown RBP15.43■□□□□ 0.06
MSH6-215ENST00000622629 WDR33Q9C0J8 1336 aaKnown RBP15.43■□□□□ 0.06
MSH6-215ENST00000622629 BECN2A8MW95 431 aa15.43■□□□□ 0.06
MSH6-215ENST00000622629 STK3Q13188 491 aa15.43■□□□□ 0.06
MSH6-215ENST00000622629 CYP46A1Q9Y6A2 500 aa15.43■□□□□ 0.06
MSH6-215ENST00000622629 GOLGA6L19H0YKK7 550 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 CEP85Q6P2H3 762 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 SYNMO15061 1565 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 PDE1AP54750 535 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 ERC1Q8IUD2 1116 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 TSPY26PQ9H489 355 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 PI4KAP2A4QPH2 592 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.42■□□□□ 0.06
MSH6-215ENST00000622629 PI4KAP1Q8N8J0 262 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 GDPD2Q9HCC8 539 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 PSMA5P28066 241 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 FBXW7Q969H0 707 aa15.42■□□□□ 0.06
MSH6-215ENST00000622629 MLH3Q9UHC1 1453 aa15.41■□□□□ 0.06
MSH6-215ENST00000622629 PPP1R42Q7Z4L9 355 aa15.41■□□□□ 0.06
MSH6-215ENST00000622629 SNX21Q969T3 373 aa15.41■□□□□ 0.06
MSH6-215ENST00000622629 ZFYVE9O95405 1425 aa15.41■□□□□ 0.06
MSH6-215ENST00000622629 G2E3Q7L622 706 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms