RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PIK3C2AO00443 1686 aa13.4□□□□□ -0.26
CUX1-221ENST00000622516 XRN1Q8IZH2 1706 aaKnown RBP13.4□□□□□ -0.26
CUX1-221ENST00000622516 SLC4A2P04920 1241 aa13.4□□□□□ -0.26
CUX1-221ENST00000622516 ARHGAP45Q92619 1136 aa13.4□□□□□ -0.26
CUX1-221ENST00000622516 NALCNQ8IZF0 1738 aa13.39□□□□□ -0.27
CUX1-221ENST00000622516 ABCC4O15439 1325 aa13.39□□□□□ -0.27
CUX1-221ENST00000622516 RTL5Q5HYW3 569 aaPredicted RBP13.39□□□□□ -0.27
CUX1-221ENST00000622516 PIK3R4Q99570 1358 aa13.39□□□□□ -0.27
CUX1-221ENST00000622516 IGSF1Q8N6C5 1336 aa13.39□□□□□ -0.27
CUX1-221ENST00000622516 G2E3Q7L622 706 aa13.38□□□□□ -0.27
CUX1-221ENST00000622516 MFAP1P55081 439 aaKnown RBP13.38□□□□□ -0.27
CUX1-221ENST00000622516 ARHGEF10O15013 1369 aa13.38□□□□□ -0.27
CUX1-221ENST00000622516 F6X3S4 739 aa13.38□□□□□ -0.27
CUX1-221ENST00000622516 NUCB1Q02818 461 aa13.38□□□□□ -0.27
CUX1-221ENST00000622516 SLC4A10Q6U841 1118 aa13.38□□□□□ -0.27
CUX1-221ENST00000622516 CHD1LQ86WJ1 897 aa13.38□□□□□ -0.27
CUX1-221ENST00000622516 API5Q9BZZ5 524 aaKnown RBP13.38□□□□□ -0.27
CUX1-221ENST00000622516 CRB1P82279 1406 aa13.38□□□□□ -0.27
CUX1-221ENST00000622516 APBB1O00213 710 aa13.37□□□□□ -0.27
CUX1-221ENST00000622516 LRRC59Q96AG4 307 aaKnown RBP13.36□□□□□ -0.27
CUX1-221ENST00000622516 RGPD1P0DJD0 1748 aa13.36□□□□□ -0.27
CUX1-221ENST00000622516 ANKARQ7Z5J8 1434 aa13.36□□□□□ -0.27
CUX1-221ENST00000622516 DEKP35659 375 aaKnown RBP13.35□□□□□ -0.27
CUX1-221ENST00000622516 IL17REQ8NFR9 667 aa13.35□□□□□ -0.27
CUX1-221ENST00000622516 GAS2L2Q8NHY3 880 aa13.35□□□□□ -0.27
CUX1-221ENST00000622516 UPF2Q9HAU5 1272 aaKnown RBP13.35□□□□□ -0.27
CUX1-221ENST00000622516 KDRP35968 1356 aa13.35□□□□□ -0.27
CUX1-221ENST00000622516 GNAT3A8MTJ3 354 aa13.35□□□□□ -0.27
CUX1-221ENST00000622516 NBPF6Q5VWK0 638 aa13.35□□□□□ -0.27
CUX1-221ENST00000622516 NBPF4Q96M43 638 aa13.35□□□□□ -0.27
CUX1-221ENST00000622516 SPRYD3Q8NCJ5 442 aa13.35□□□□□ -0.27
CUX1-221ENST00000622516 FMN2Q9NZ56 1722 aa13.34□□□□□ -0.27
CUX1-221ENST00000622516 MEIS3Q99687 375 aa13.34□□□□□ -0.27
CUX1-221ENST00000622516 SLKQ9H2G2 1235 aaPredicted RBP13.34□□□□□ -0.27
CUX1-221ENST00000622516 CHD2O14647 1828 aaKnown RBP13.33□□□□□ -0.28
CUX1-221ENST00000622516 DDX17Q92841 729 aaKnown RBP13.33□□□□□ -0.28
CUX1-221ENST00000622516 PROSER2Q86WR7 435 aaPredicted RBP13.33□□□□□ -0.28
CUX1-221ENST00000622516 TBC1D32Q96NH3 1257 aa13.33□□□□□ -0.28
CUX1-221ENST00000622516 PODXL2Q9NZ53 605 aa13.33□□□□□ -0.28
CUX1-221ENST00000622516 VIRMAQ69YN4 1812 aaKnown RBP13.33□□□□□ -0.28
CUX1-221ENST00000622516 C16orf71Q8IYS4 520 aaPredicted RBP13.32□□□□□ -0.28
CUX1-221ENST00000622516 MSH6P52701 1360 aa13.32□□□□□ -0.28
CUX1-221ENST00000622516 INTS3Q68E01 1043 aaKnown RBP13.32□□□□□ -0.28
CUX1-221ENST00000622516 LGR6Q9HBX8 967 aa13.32□□□□□ -0.28
CUX1-221ENST00000622516 RGS12O14924 1447 aa13.31□□□□□ -0.28
CUX1-221ENST00000622516 NPHP4O75161 1426 aaPredicted RBP13.31□□□□□ -0.28
CUX1-221ENST00000622516 IP6K1Q92551 441 aa13.31□□□□□ -0.28
CUX1-221ENST00000622516 KIAA0232Q92628 1395 aa13.31□□□□□ -0.28
CUX1-221ENST00000622516 NFKBIBQ15653 356 aa13.31□□□□□ -0.28
CUX1-221ENST00000622516 GCC1Q96CN9 775 aa13.31□□□□□ -0.28
CUX1-221ENST00000622516 C22orf23Q9BZE7 217 aa13.31□□□□□ -0.28
CUX1-221ENST00000622516 CHMP4BQ9H444 224 aaKnown RBP13.31□□□□□ -0.28
CUX1-221ENST00000622516 MARF1Q9Y4F3 1742 aaKnown RBP13.3□□□□□ -0.28
CUX1-221ENST00000622516 SMARCA5O60264 1052 aaPredicted RBP13.3□□□□□ -0.28
CUX1-221ENST00000622516 GCP02774 474 aa13.3□□□□□ -0.28
CUX1-221ENST00000622516 OTUD7AQ8TE49 926 aaPredicted RBP13.3□□□□□ -0.28
CUX1-221ENST00000622516 ADGRL3Q9HAR2 1447 aa13.29□□□□□ -0.28
CUX1-221ENST00000622516 EIF2S2P20042 333 aaKnown RBP13.29□□□□□ -0.28
CUX1-221ENST00000622516 HAP1P54257 671 aaPredicted RBP13.29□□□□□ -0.28
CUX1-221ENST00000622516 FKBP5Q13451 457 aaPredicted RBP13.29□□□□□ -0.28
CUX1-221ENST00000622516 STK31Q9BXU1 1019 aa13.29□□□□□ -0.28
CUX1-221ENST00000622516 ZC3H6P61129 1189 aaKnown RBP13.29□□□□□ -0.28
CUX1-221ENST00000622516 MPRIPQ6WCQ1 1025 aa13.29□□□□□ -0.28
CUX1-221ENST00000622516 TBC1D2Q9BYX2 928 aa13.29□□□□□ -0.28
CUX1-221ENST00000622516 AXIN2Q9Y2T1 843 aa13.29□□□□□ -0.28
CUX1-221ENST00000622516 NWD1Q149M9 1564 aa13.28□□□□□ -0.28
CUX1-221ENST00000622516 KCNQ3O43525 872 aa13.28□□□□□ -0.28
CUX1-221ENST00000622516 TAF7Q15545 349 aaPredicted RBP13.28□□□□□ -0.28
CUX1-221ENST00000622516 CEP85Q6P2H3 762 aa13.28□□□□□ -0.28
CUX1-221ENST00000622516 MAP3K5Q99683 1374 aa13.28□□□□□ -0.28
CUX1-221ENST00000622516 PTPRCP08575 1304 aa13.28□□□□□ -0.28
CUX1-221ENST00000622516 FRAT2O75474 233 aaPredicted RBP13.28□□□□□ -0.28
CUX1-221ENST00000622516 ADAMTSL3P82987 1691 aa13.27□□□□□ -0.28
CUX1-221ENST00000622516 FLIIQ13045 1269 aa13.27□□□□□ -0.29
CUX1-221ENST00000622516 BECN1Q14457 450 aa13.27□□□□□ -0.29
CUX1-221ENST00000622516 KRT28Q7Z3Y7 464 aa13.27□□□□□ -0.29
CUX1-221ENST00000622516 DCTPP1Q9H773 170 aa13.27□□□□□ -0.29
CUX1-221ENST00000622516 RTL1A6NKG5 1358 aa13.27□□□□□ -0.29
CUX1-221ENST00000622516 LTN1O94822 1766 aa13.27□□□□□ -0.29
CUX1-221ENST00000622516 ANXA1P04083 346 aa13.26□□□□□ -0.29
CUX1-221ENST00000622516 HSPA2P54652 639 aa13.26□□□□□ -0.29
CUX1-221ENST00000622516 PHAXQ9H814 394 aaKnown RBP13.26□□□□□ -0.29
CUX1-221ENST00000622516 ANKRD44Q8N8A2 993 aa13.26□□□□□ -0.29
CUX1-221ENST00000622516 KCNH5Q8NCM2 988 aa13.26□□□□□ -0.29
CUX1-221ENST00000622516 HTATSF1O43719 755 aaKnown RBP13.25□□□□□ -0.29
CUX1-221ENST00000622516 BMP2KLQ5H9B9 411 aa13.25□□□□□ -0.29
CUX1-221ENST00000622516 CCDC30Q5VVM6 783 aa13.25□□□□□ -0.29
CUX1-221ENST00000622516 ZNF530Q6P9A1 599 aaPredicted RBP13.25□□□□□ -0.29
CUX1-221ENST00000622516 CABLES1Q8TDN4 633 aa13.25□□□□□ -0.29
CUX1-221ENST00000622516 ATP10DQ9P241 1426 aa13.25□□□□□ -0.29
CUX1-221ENST00000622516 GSPT1P15170 499 aaKnown RBP13.25□□□□□ -0.29
CUX1-221ENST00000622516 PLEKHM2Q8IWE5 1019 aa13.25□□□□□ -0.29
CUX1-221ENST00000622516 PKNOX2Q96KN3 472 aa13.25□□□□□ -0.29
CUX1-221ENST00000622516 HDGFL1Q5TGJ6 251 aa13.24□□□□□ -0.29
CUX1-221ENST00000622516 ARHGEF25Q86VW2 580 aa13.24□□□□□ -0.29
CUX1-221ENST00000622516 ANKRD24Q8TF21 1146 aa13.24□□□□□ -0.29
CUX1-221ENST00000622516 RGPD2P0DJD1 1756 aa13.24□□□□□ -0.29
CUX1-221ENST00000622516 TBC1D9Q6ZT07 1266 aa13.24□□□□□ -0.29
CUX1-221ENST00000622516 ZNF142P52746 1687 aaPredicted RBP13.24□□□□□ -0.29
CUX1-221ENST00000622516 KIF24Q5T7B8 1368 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms