RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 NBR1Q14596 966 aa13.37□□□□□ -0.27
VPS11-208ENST00000621676 BTG4Q9NY30 223 aa13.37□□□□□ -0.27
VPS11-208ENST00000621676 TSHZ3Q63HK5 1081 aa13.37□□□□□ -0.27
VPS11-208ENST00000621676 DIP2AQ14689 1571 aa13.37□□□□□ -0.27
VPS11-208ENST00000621676 HDGFL1Q5TGJ6 251 aa13.36□□□□□ -0.27
VPS11-208ENST00000621676 ANKRD45Q5TZF3 282 aa13.36□□□□□ -0.27
VPS11-208ENST00000621676 KCNH5Q8NCM2 988 aa13.36□□□□□ -0.27
VPS11-208ENST00000621676 RNF123Q5XPI4 1314 aa13.36□□□□□ -0.27
VPS11-208ENST00000621676 UBAP1LF5GYI3 381 aa13.36□□□□□ -0.27
VPS11-208ENST00000621676 TECPR2O15040 1411 aa13.36□□□□□ -0.27
VPS11-208ENST00000621676 SMARCA5O60264 1052 aaPredicted RBP13.36□□□□□ -0.27
VPS11-208ENST00000621676 MED14O60244 1454 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 NPHP3Q7Z494 1330 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 PDE4AP27815 886 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 STK31Q9BXU1 1019 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 ADGRL3Q9HAR2 1447 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 FAM177BA6PVY3 158 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 MVPQ14764 893 aaKnown RBP13.35□□□□□ -0.27
VPS11-208ENST00000621676 GAS2L2Q8NHY3 880 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 ACSBG1Q96GR2 724 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 PNPLA6Q8IY17 1366 aa13.35□□□□□ -0.27
VPS11-208ENST00000621676 LMOD3Q0VAK6 560 aa13.34□□□□□ -0.27
VPS11-208ENST00000621676 CCDC85AQ96PX6 553 aaPredicted RBP13.34□□□□□ -0.27
VPS11-208ENST00000621676 SBNO1A3KN83 1393 aa13.34□□□□□ -0.27
VPS11-208ENST00000621676 MEIS3Q99687 375 aa13.34□□□□□ -0.27
VPS11-208ENST00000621676 PDZRN3Q9UPQ7 1066 aa13.34□□□□□ -0.27
VPS11-208ENST00000621676 SLIT1O75093 1534 aa13.34□□□□□ -0.27
VPS11-208ENST00000621676 NEURL4Q96JN8 1562 aa13.34□□□□□ -0.27
VPS11-208ENST00000621676 LMTK3Q96Q04 1460 aa13.33□□□□□ -0.27
VPS11-208ENST00000621676 SMIM5Q71RC9 77 aa13.33□□□□□ -0.28
VPS11-208ENST00000621676 PHF23Q9BUL5 403 aaPredicted RBP13.33□□□□□ -0.28
VPS11-208ENST00000621676 PROSER3Q2NL68 480 aa13.33□□□□□ -0.28
VPS11-208ENST00000621676 C16orf71Q8IYS4 520 aaPredicted RBP13.33□□□□□ -0.28
VPS11-208ENST00000621676 IFT57Q9NWB7 429 aa13.33□□□□□ -0.28
VPS11-208ENST00000621676 CHPF2Q9P2E5 772 aa13.33□□□□□ -0.28
VPS11-208ENST00000621676 LRRC7Q96NW7 1537 aa13.33□□□□□ -0.28
VPS11-208ENST00000621676 IPO8O15397 1037 aaKnown RBP13.33□□□□□ -0.28
VPS11-208ENST00000621676 PLEKHO1Q53GL0 409 aaPredicted RBP13.33□□□□□ -0.28
VPS11-208ENST00000621676 C1orf167Q5SNV9 1468 aa13.32□□□□□ -0.28
VPS11-208ENST00000621676 RBM42Q9BTD8 480 aaKnown RBP13.32□□□□□ -0.28
VPS11-208ENST00000621676 TAF7Q15545 349 aaPredicted RBP13.32□□□□□ -0.28
VPS11-208ENST00000621676 CCDC27Q2M243 656 aa13.32□□□□□ -0.28
VPS11-208ENST00000621676 MRPL50Q8N5N7 158 aaKnown RBP13.32□□□□□ -0.28
VPS11-208ENST00000621676 TATP17735 454 aaPredicted RBP13.31□□□□□ -0.28
VPS11-208ENST00000621676 C8orf37Q96NL8 207 aa13.31□□□□□ -0.28
VPS11-208ENST00000621676 OVOS2A0A0J9YW53 1432 aa13.31□□□□□ -0.28
VPS11-208ENST00000621676 OVOS2Q6IE36 1432 aa13.31□□□□□ -0.28
VPS11-208ENST00000621676 SEC24BO95487 1268 aa13.31□□□□□ -0.28
VPS11-208ENST00000621676 CALD1Q05682 793 aaKnown RBP13.31□□□□□ -0.28
VPS11-208ENST00000621676 EXOC6BQ9Y2D4 811 aa13.3□□□□□ -0.28
VPS11-208ENST00000621676 IGSF1Q8N6C5 1336 aa13.3□□□□□ -0.28
VPS11-208ENST00000621676 CHL1O00533 1208 aa13.3□□□□□ -0.28
VPS11-208ENST00000621676 CDC42BPGQ6DT37 1551 aa13.3□□□□□ -0.28
VPS11-208ENST00000621676 PTCH1Q13635 1447 aa13.29□□□□□ -0.28
VPS11-208ENST00000621676 ATP5J2-PTCD1G3V325 749 aa13.29□□□□□ -0.28
VPS11-208ENST00000621676 MSH5O43196 834 aa13.29□□□□□ -0.28
VPS11-208ENST00000621676 ERBB3P21860 1342 aa13.29□□□□□ -0.28
VPS11-208ENST00000621676 PI4KAP2A4QPH2 592 aa13.29□□□□□ -0.28
VPS11-208ENST00000621676 PDE3AQ14432 1141 aa13.29□□□□□ -0.28
VPS11-208ENST00000621676 CWF19L2Q2TBE0 894 aaKnown RBP13.29□□□□□ -0.28
VPS11-208ENST00000621676 PI4KAP1Q8N8J0 262 aa13.29□□□□□ -0.28
VPS11-208ENST00000621676 ZBTB47Q9UFB7 747 aaPredicted RBP13.29□□□□□ -0.28
VPS11-208ENST00000621676 AATKQ6ZMQ8 1374 aa13.28□□□□□ -0.28
VPS11-208ENST00000621676 USP16Q9Y5T5 823 aa13.28□□□□□ -0.28
VPS11-208ENST00000621676 CABP4P57796 275 aa13.28□□□□□ -0.28
VPS11-208ENST00000621676 OTUD7AQ8TE49 926 aaPredicted RBP13.28□□□□□ -0.28
VPS11-208ENST00000621676 MFAP1P55081 439 aaKnown RBP13.28□□□□□ -0.28
VPS11-208ENST00000621676 IL1RAPL2Q9NP60 686 aa13.28□□□□□ -0.28
VPS11-208ENST00000621676 CHMP3Q9Y3E7 222 aa13.28□□□□□ -0.28
VPS11-208ENST00000621676 COL3A1P02461 1466 aaPredicted RBP13.28□□□□□ -0.28
VPS11-208ENST00000621676 CYP27B1O15528 508 aa13.27□□□□□ -0.28
VPS11-208ENST00000621676 MAP4K4O95819 1239 aaPredicted RBP13.27□□□□□ -0.28
VPS11-208ENST00000621676 FLIIQ13045 1269 aa13.27□□□□□ -0.28
VPS11-208ENST00000621676 CENPQQ7L2Z9 268 aaPredicted RBP13.27□□□□□ -0.28
VPS11-208ENST00000621676 TTC5Q8N0Z6 440 aa13.27□□□□□ -0.29
VPS11-208ENST00000621676 RWDD1Q9H446 243 aaPredicted RBP13.27□□□□□ -0.29
VPS11-208ENST00000621676 DDX19BQ9UMR2 479 aa13.27□□□□□ -0.29
VPS11-208ENST00000621676 SETD1AO15047 1707 aaKnown RBP13.26□□□□□ -0.29
VPS11-208ENST00000621676 SPATA31A3Q5VYP0 1347 aa13.26□□□□□ -0.29
VPS11-208ENST00000621676 ERICH6BQ5W0A0 696 aa13.26□□□□□ -0.29
VPS11-208ENST00000621676 ZNF496Q96IT1 587 aaPredicted RBP13.26□□□□□ -0.29
VPS11-208ENST00000621676 SIL1Q9H173 461 aa13.26□□□□□ -0.29
VPS11-208ENST00000621676 USP19O94966 1318 aa13.26□□□□□ -0.29
VPS11-208ENST00000621676 RNMTO43148 476 aaKnown RBP13.26□□□□□ -0.29
VPS11-208ENST00000621676 ANP32AP39687 249 aaKnown RBP13.26□□□□□ -0.29
VPS11-208ENST00000621676 NGLY1Q96IV0 654 aa13.25□□□□□ -0.29
VPS11-208ENST00000621676 PIK3R4Q99570 1358 aa13.25□□□□□ -0.29
VPS11-208ENST00000621676 ZNF853P0CG23 659 aa13.25□□□□□ -0.29
VPS11-208ENST00000621676 KIF16BQ96L93 1317 aa13.25□□□□□ -0.29
VPS11-208ENST00000621676 KLHDC4Q8TBB5 520 aa13.24□□□□□ -0.29
VPS11-208ENST00000621676 SSH2Q76I76 1423 aa13.24□□□□□ -0.29
VPS11-208ENST00000621676 A1BGP04217 495 aa13.24□□□□□ -0.29
VPS11-208ENST00000621676 ZBTB3Q9H5J0 574 aa13.24□□□□□ -0.29
VPS11-208ENST00000621676 USP31Q70CQ4 1352 aa13.24□□□□□ -0.29
VPS11-208ENST00000621676 ADAMTSL3P82987 1691 aa13.23□□□□□ -0.29
VPS11-208ENST00000621676 FOXD4L1Q9NU39 408 aa13.23□□□□□ -0.29
VPS11-208ENST00000621676 SHPRHQ149N8 1683 aa13.23□□□□□ -0.29
VPS11-208ENST00000621676 ZBTB7BO15156 539 aaPredicted RBP13.23□□□□□ -0.29
VPS11-208ENST00000621676 DTNBO60941 627 aa13.23□□□□□ -0.29
VPS11-208ENST00000621676 OS9Q13438 667 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms