RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 IP6K1Q92551 441 aa16.1■□□□□ 0.17
CPNE3-210ENST00000621245 ANKRD26Q9UPS8 1709 aa16.09■□□□□ 0.17
CPNE3-210ENST00000621245 HOXC9P31274 260 aa16.09■□□□□ 0.17
CPNE3-210ENST00000621245 RRS1Q15050 365 aaKnown RBP16.08■□□□□ 0.16
CPNE3-210ENST00000621245 TXNRD1Q16881 649 aa16.08■□□□□ 0.16
CPNE3-210ENST00000621245 COG3Q96JB2 828 aa16.08■□□□□ 0.16
CPNE3-210ENST00000621245 GGNBP2Q9H3C7 697 aa16.08■□□□□ 0.16
CPNE3-210ENST00000621245 LY75O60449 1722 aa16.08■□□□□ 0.16
CPNE3-210ENST00000621245 TOGARAM1Q9Y4F4 1720 aa16.06■□□□□ 0.16
CPNE3-210ENST00000621245 FYB1O15117 783 aa16.06■□□□□ 0.16
CPNE3-210ENST00000621245 MAP2P11137 1827 aaKnown RBP16.05■□□□□ 0.16
CPNE3-210ENST00000621245 QSER1Q2KHR3 1735 aa16.05■□□□□ 0.16
CPNE3-210ENST00000621245 TMF1P82094 1093 aa16.05■□□□□ 0.16
CPNE3-210ENST00000621245 NSD3Q9BZ95 1437 aa16.04■□□□□ 0.16
CPNE3-210ENST00000621245 NSD2O96028 1365 aa16.04■□□□□ 0.16
CPNE3-210ENST00000621245 ZBTB7AO95365 584 aa16.04■□□□□ 0.16
CPNE3-210ENST00000621245 USHBP1Q8N6Y0 703 aa16.04■□□□□ 0.16
CPNE3-210ENST00000621245 CARD14Q9BXL6 1004 aa16.04■□□□□ 0.16
CPNE3-210ENST00000621245 RTL1A6NKG5 1358 aa16.03■□□□□ 0.16
CPNE3-210ENST00000621245 AMPHP49418 695 aa16.03■□□□□ 0.16
CPNE3-210ENST00000621245 SPON1Q9HCB6 807 aa16.03■□□□□ 0.16
CPNE3-210ENST00000621245 ITGB4P16144 1822 aa16.03■□□□□ 0.16
CPNE3-210ENST00000621245 PKD1L3Q7Z443 1732 aa16.02■□□□□ 0.16
CPNE3-210ENST00000621245 ZNF827Q17R98 1081 aa16.02■□□□□ 0.16
CPNE3-210ENST00000621245 DDX54Q8TDD1 881 aaKnown RBP16.02■□□□□ 0.16
CPNE3-210ENST00000621245 PCGF6Q9BYE7 350 aa16.02■□□□□ 0.16
CPNE3-210ENST00000621245 LRRC4BQ9NT99 713 aa16.02■□□□□ 0.16
CPNE3-210ENST00000621245 PTGER2P43116 358 aa16.01■□□□□ 0.15
CPNE3-210ENST00000621245 SLC15A2Q16348 729 aa16.01■□□□□ 0.15
CPNE3-210ENST00000621245 NBPF6Q5VWK0 638 aa16.01■□□□□ 0.15
CPNE3-210ENST00000621245 NBPF4Q96M43 638 aa16.01■□□□□ 0.15
CPNE3-210ENST00000621245 COL24A1Q17RW2 1714 aa16.01■□□□□ 0.15
CPNE3-210ENST00000621245 STK32BQ9NY57 414 aa16■□□□□ 0.15
CPNE3-210ENST00000621245 TAF1LQ8IZX4 1826 aa15.99■□□□□ 0.15
CPNE3-210ENST00000621245 KCNQ4P56696 695 aa15.99■□□□□ 0.15
CPNE3-210ENST00000621245 MKRN4PQ13434 485 aaPredicted RBP15.99■□□□□ 0.15
CPNE3-210ENST00000621245 HSP90AB2PQ58FF8 381 aa15.99■□□□□ 0.15
CPNE3-210ENST00000621245 PPP1R1BQ9UD71 204 aaPredicted RBP15.99■□□□□ 0.15
CPNE3-210ENST00000621245 EMILIN1Q9Y6C2 1016 aa15.98■□□□□ 0.15
CPNE3-210ENST00000621245 C5P01031 1676 aa15.98■□□□□ 0.15
CPNE3-210ENST00000621245 INSRP06213 1382 aa15.97■□□□□ 0.15
CPNE3-210ENST00000621245 SPDYE4A6NLX3 237 aa15.96■□□□□ 0.15
CPNE3-210ENST00000621245 PRIM1P49642 420 aaKnown RBP15.96■□□□□ 0.15
CPNE3-210ENST00000621245 ZCRB1Q8TBF4 217 aaKnown RBP15.96■□□□□ 0.15
CPNE3-210ENST00000621245 SGIP1Q9BQI5 828 aa15.96■□□□□ 0.15
CPNE3-210ENST00000621245 FLT4P35916 1363 aa15.96■□□□□ 0.15
CPNE3-210ENST00000621245 SYTL4Q96C24 671 aaPredicted RBP15.95■□□□□ 0.14
CPNE3-210ENST00000621245 NCAPD2Q15021 1401 aa15.94■□□□□ 0.14
CPNE3-210ENST00000621245 SMG6Q86US8 1419 aaKnown RBP15.94■□□□□ 0.14
CPNE3-210ENST00000621245 AKT1S1Q96B36 256 aa15.94■□□□□ 0.14
CPNE3-210ENST00000621245 CDCA8Q53HL2 280 aa15.92■□□□□ 0.14
CPNE3-210ENST00000621245 POLR3GLQ9BT43 218 aa15.92■□□□□ 0.14
CPNE3-210ENST00000621245 MTFR1LQ9H019 292 aa15.92■□□□□ 0.14
CPNE3-210ENST00000621245 PNPLA7Q6ZV29 1317 aa15.92■□□□□ 0.14
CPNE3-210ENST00000621245 CLSPNQ9HAW4 1339 aa15.92■□□□□ 0.14
CPNE3-210ENST00000621245 KIF24Q5T7B8 1368 aa15.9■□□□□ 0.14
CPNE3-210ENST00000621245 HSPA5P11021 654 aaKnown RBP15.9■□□□□ 0.14
CPNE3-210ENST00000621245 FHDC1Q9C0D6 1143 aaPredicted RBP15.9■□□□□ 0.14
CPNE3-210ENST00000621245 TIMELESSQ9UNS1 1208 aa15.9■□□□□ 0.14
CPNE3-210ENST00000621245 UBR3Q6ZT12 1888 aa15.89■□□□□ 0.13
CPNE3-210ENST00000621245 PPM1GO15355 546 aaPredicted RBP15.89■□□□□ 0.13
CPNE3-210ENST00000621245 CYP27B1O15528 508 aa15.89■□□□□ 0.13
CPNE3-210ENST00000621245 RAPGEF4Q8WZA2 1011 aa15.89■□□□□ 0.13
CPNE3-210ENST00000621245 FBXO3Q9UK99 471 aa15.89■□□□□ 0.13
CPNE3-210ENST00000621245 CHD4Q14839 1912 aa15.89■□□□□ 0.13
CPNE3-210ENST00000621245 TATP17735 454 aaPredicted RBP15.88■□□□□ 0.13
CPNE3-210ENST00000621245 SLC27A3Q5K4L6 730 aa15.88■□□□□ 0.13
CPNE3-210ENST00000621245 C4BP0C0L5 1744 aa15.88■□□□□ 0.13
CPNE3-210ENST00000621245 CGNL1Q0VF96 1302 aa15.87■□□□□ 0.13
CPNE3-210ENST00000621245 YY1P25490 414 aa15.86■□□□□ 0.13
CPNE3-210ENST00000621245 TNNT2P45379 298 aaPredicted RBP15.86■□□□□ 0.13
CPNE3-210ENST00000621245 SYT17Q9BSW7 474 aa15.86■□□□□ 0.13
CPNE3-210ENST00000621245 POLKQ9UBT6 870 aa15.86■□□□□ 0.13
CPNE3-210ENST00000621245 CCNL1Q9UK58 526 aaPredicted RBP15.86■□□□□ 0.13
CPNE3-210ENST00000621245 PCDH11XQ9BZA7 1347 aa15.86■□□□□ 0.13
CPNE3-210ENST00000621245 PCDH11YQ9BZA8 1340 aa15.86■□□□□ 0.13
CPNE3-210ENST00000621245 ARXQ96QS3 562 aa15.85■□□□□ 0.13
CPNE3-210ENST00000621245 EYA1Q99502 592 aa15.85■□□□□ 0.13
CPNE3-210ENST00000621245 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
CPNE3-210ENST00000621245 WASHC2AQ641Q2 1341 aa15.85■□□□□ 0.13
CPNE3-210ENST00000621245 AMIGO3Q86WK7 504 aa15.84■□□□□ 0.13
CPNE3-210ENST00000621245 CCER1Q8TC90 406 aaPredicted RBP15.84■□□□□ 0.13
CPNE3-210ENST00000621245 PALLDQ8WX93 1383 aa15.84■□□□□ 0.13
CPNE3-210ENST00000621245 VIRMAQ69YN4 1812 aaKnown RBP15.83■□□□□ 0.12
CPNE3-210ENST00000621245 EIF4A2Q14240 407 aaKnown RBP15.83■□□□□ 0.12
CPNE3-210ENST00000621245 MPRIPQ6WCQ1 1025 aa15.83■□□□□ 0.12
CPNE3-210ENST00000621245 EIF4G2P78344 907 aaKnown RBP eCLIP15.82■□□□□ 0.12
CPNE3-210ENST00000621245 SMIM5Q71RC9 77 aa15.82■□□□□ 0.12
CPNE3-210ENST00000621245 PANK3Q9H999 370 aa15.82■□□□□ 0.12
CPNE3-210ENST00000621245 TFCP2L1Q9NZI6 479 aa15.82■□□□□ 0.12
CPNE3-210ENST00000621245 MAP3K5Q99683 1374 aa15.82■□□□□ 0.12
CPNE3-210ENST00000621245 COL23A1Q86Y22 540 aaPredicted RBP15.81■□□□□ 0.12
CPNE3-210ENST00000621245 COL5A3P25940 1745 aaPredicted RBP15.8■□□□□ 0.12
CPNE3-210ENST00000621245 MSL1Q68DK7 614 aa15.8■□□□□ 0.12
CPNE3-210ENST00000621245 PIGBQ92521 554 aa15.8■□□□□ 0.12
CPNE3-210ENST00000621245 KLHL34Q8N239 644 aa15.79■□□□□ 0.12
CPNE3-210ENST00000621245 NLGN2Q8NFZ4 835 aa15.79■□□□□ 0.12
CPNE3-210ENST00000621245 NKX1-1Q15270 411 aaPredicted RBP15.78■□□□□ 0.12
CPNE3-210ENST00000621245 IGSF1Q8N6C5 1336 aa15.77■□□□□ 0.12
CPNE3-210ENST00000621245 PHKG2P15735 406 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms