RNA–Protein interactions for RNA: ENST00000620507.4

RBFOX1-223, Transcript of RNA binding fox-1 homolog 1, human

TSL 5 BASIC

Gene RBFOX1, Length 4,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBFOX1-223	ENST00000620507	MAP3K19	Q56UN5	1328 aa		11.28	□□□□□ -0.6
RBFOX1-223	ENST00000620507	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.28	□□□□□ -0.6
RBFOX1-223	ENST00000620507	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.28	□□□□□ -0.6
RBFOX1-223	ENST00000620507	ALK	Q9UM73	1620 aa		11.28	□□□□□ -0.6
RBFOX1-223	ENST00000620507	A2ML1	A8K2U0	1454 aa		11.28	□□□□□ -0.6
RBFOX1-223	ENST00000620507	FOXO3	O43524	673 aa		11.27	□□□□□ -0.6
RBFOX1-223	ENST00000620507	TAF7	Q15545	349 aa	Predicted RBP	11.27	□□□□□ -0.6
RBFOX1-223	ENST00000620507	MTHFSD	Q2M296	383 aa	Known RBP	11.27	□□□□□ -0.6
RBFOX1-223	ENST00000620507	USHBP1	Q8N6Y0	703 aa		11.27	□□□□□ -0.6
RBFOX1-223	ENST00000620507	TBX22	Q9Y458	520 aa		11.27	□□□□□ -0.6
RBFOX1-223	ENST00000620507	NUCB2	P80303	420 aa		11.27	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.27	□□□□□ -0.61
RBFOX1-223	ENST00000620507	MEIS3	Q99687	375 aa		11.27	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PLEKHG3	A1L390	1219 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	FLT4	P35916	1363 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ERC2	O15083	957 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ANKRD44	Q8N8A2	993 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	SRCIN1	Q9C0H9	1055 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	AATK	Q6ZMQ8	1374 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	FLII	Q13045	1269 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	FAM135B	Q49AJ0	1406 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PTPRM	P28827	1452 aa		11.26	□□□□□ -0.61
RBFOX1-223	ENST00000620507	XPC	Q01831	940 aa	Predicted RBP	11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	HSP90AB4P	Q58FF6	505 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	VSIG10	Q8N0Z9	540 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	RAPGEF4	Q8WZA2	1011 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	EYA1	Q99502	592 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PPL	O60437	1756 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	CHL1	O00533	1208 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	DDX58	O95786	925 aa	Known RBP	11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	NEK4	P51957	841 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	KCNH5	Q8NCM2	988 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507		A0A0G2JS52	829 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PROSER2	Q86WR7	435 aa	Predicted RBP	11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	DCTPP1	Q9H773	170 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	NLRP2	Q9NX02	1062 aa		11.25	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PNPLA6	Q8IY17	1366 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	MYOM1	P52179	1685 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	NEXN	Q0ZGT2	675 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	DIAPH3	Q9NSV4	1193 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PIK3C2B	O00750	1634 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	KCNA6	P17658	529 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	FGD1	P98174	961 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	AIMP1	Q12904	312 aa	Known RBP	11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PRR36	Q9H6K5	1346 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	IFIT2	P09913	472 aa	Known RBP	11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	TTC22	Q5TAA0	569 aa		11.24	□□□□□ -0.61
RBFOX1-223	ENST00000620507	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	IL1RAPL2	Q9NP60	686 aa		11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ROBO2	Q9HCK4	1378 aa		11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	MED14	O60244	1454 aa		11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	BTBD11	A6QL63	1104 aa		11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PTMA	P06454	111 aa	Known RBP	11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	MCTP1	Q6DN14	999 aa		11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	BRPF1	P55201	1214 aa	Predicted RBP	11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	TTC5	Q8N0Z6	440 aa		11.23	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ARHGEF40	Q8TER5	1519 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ABCC4	O15439	1325 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	SRGAP3	O43295	1099 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ATF3	P18847	181 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	CEP85	Q6P2H3	762 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	CLASRP	Q8N2M8	674 aa	Known RBP	11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	RUFY2	Q8WXA3	655 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	IQSEC2	Q5JU85	1478 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ZNF853	P0CG23	659 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	CHMP3	Q9Y3E7	222 aa		11.22	□□□□□ -0.61
RBFOX1-223	ENST00000620507	HTATSF1	O43719	755 aa	Known RBP	11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	MX1	P20591	662 aa		11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	MRE11	P49959	708 aa		11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	LRRFIP2	Q9Y608	721 aa	Known RBP	11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	ZC3H13	Q5T200	1668 aa	Known RBP	11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	MYO3A	Q8NEV4	1616 aa		11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	RIC3	Q7Z5B4	369 aa		11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	PLEKHM2	Q8IWE5	1019 aa		11.21	□□□□□ -0.61
RBFOX1-223	ENST00000620507	SDS	P20132	328 aa		11.21	□□□□□ -0.62
RBFOX1-223	ENST00000620507	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.21	□□□□□ -0.62
RBFOX1-223	ENST00000620507	SBNO1	A3KN83	1393 aa		11.21	□□□□□ -0.62
RBFOX1-223	ENST00000620507	PIK3R4	Q99570	1358 aa		11.21	□□□□□ -0.62
RBFOX1-223	ENST00000620507	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.2	□□□□□ -0.62
RBFOX1-223	ENST00000620507	CNTROB	Q8N137	903 aa		11.2	□□□□□ -0.62
RBFOX1-223	ENST00000620507	HOXC9	P31274	260 aa		11.2	□□□□□ -0.62
RBFOX1-223	ENST00000620507	RBM25	P49756	843 aa	Known RBP	11.2	□□□□□ -0.62
RBFOX1-223	ENST00000620507	MPRIP	Q6WCQ1	1025 aa		11.2	□□□□□ -0.62
RBFOX1-223	ENST00000620507	G2E3	Q7L622	706 aa		11.2	□□□□□ -0.62
RBFOX1-223	ENST00000620507	SNX21	Q969T3	373 aa		11.2	□□□□□ -0.62
RBFOX1-223	ENST00000620507	SYAP1	Q96A49	352 aa	Predicted RBP	11.2	□□□□□ -0.62
RBFOX1-223	ENST00000620507	MCM2	P49736	904 aa		11.19	□□□□□ -0.62
RBFOX1-223	ENST00000620507	TNPO1	Q92973	898 aa	Known RBP	11.19	□□□□□ -0.62
RBFOX1-223	ENST00000620507	RBM42	Q9BTD8	480 aa	Known RBP	11.19	□□□□□ -0.62
RBFOX1-223	ENST00000620507	USP19	O94966	1318 aa		11.19	□□□□□ -0.62
RBFOX1-223	ENST00000620507	CWC22	Q9HCG8	908 aa	Known RBP	11.19	□□□□□ -0.62
RBFOX1-223	ENST00000620507	MSN	P26038	577 aa	Known RBP	11.19	□□□□□ -0.62
RBFOX1-223	ENST00000620507	ZC3H6	P61129	1189 aa	Known RBP	11.19	□□□□□ -0.62
RBFOX1-223	ENST00000620507	PLCB2	Q00722	1185 aa		11.19	□□□□□ -0.62
RBFOX1-223	ENST00000620507	MSH6	P52701	1360 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms