RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CDCA7Q9BWT1 371 aaPredicted RBP22.01■■□□□ 1.11
BRCA1-228ENST00000618469 KAT6BQ8WYB5 2073 aa22■■□□□ 1.11
BRCA1-228ENST00000618469 ACSBG1Q96GR2 724 aa22■■□□□ 1.11
BRCA1-228ENST00000618469 FLT4P35916 1363 aa21.99■■□□□ 1.11
BRCA1-228ENST00000618469 SMG6Q86US8 1419 aaKnown RBP21.99■■□□□ 1.11
BRCA1-228ENST00000618469 EXOC5O00471 708 aa21.97■■□□□ 1.11
BRCA1-228ENST00000618469 NSD2O96028 1365 aa21.97■■□□□ 1.11
BRCA1-228ENST00000618469 KIF24Q5T7B8 1368 aa21.97■■□□□ 1.11
BRCA1-228ENST00000618469 MAP2P11137 1827 aaKnown RBP21.96■■□□□ 1.11
BRCA1-228ENST00000618469 SGIP1Q9BQI5 828 aa21.96■■□□□ 1.11
BRCA1-228ENST00000618469 MTFR1LQ9H019 292 aa21.96■■□□□ 1.11
BRCA1-228ENST00000618469 EMILIN1Q9Y6C2 1016 aa21.95■■□□□ 1.1
BRCA1-228ENST00000618469 IL2RBP14784 551 aa21.94■■□□□ 1.1
BRCA1-228ENST00000618469 C1QTNF8P60827 252 aa21.94■■□□□ 1.1
BRCA1-228ENST00000618469 KLHL34Q8N239 644 aa21.94■■□□□ 1.1
BRCA1-228ENST00000618469 INSRP06213 1382 aa21.94■■□□□ 1.1
BRCA1-228ENST00000618469 ARXQ96QS3 562 aa21.93■■□□□ 1.1
BRCA1-228ENST00000618469 BCL9O00512 1426 aa21.92■■□□□ 1.1
BRCA1-228ENST00000618469 TNNT2P45379 298 aaPredicted RBP21.92■■□□□ 1.1
BRCA1-228ENST00000618469 HSP90AB2PQ58FF8 381 aa21.92■■□□□ 1.1
BRCA1-228ENST00000618469 WASHC2AQ641Q2 1341 aa21.91■■□□□ 1.1
BRCA1-228ENST00000618469 PPM1GO15355 546 aaPredicted RBP21.91■■□□□ 1.1
BRCA1-228ENST00000618469 KNSTRNQ9Y448 316 aa21.91■■□□□ 1.1
BRCA1-228ENST00000618469 MEGF6O75095 1541 aa21.9■■□□□ 1.1
BRCA1-228ENST00000618469 GPR162Q16538 588 aa21.9■■□□□ 1.1
BRCA1-228ENST00000618469 ZNF827Q17R98 1081 aa21.9■■□□□ 1.1
BRCA1-228ENST00000618469 PELP1Q8IZL8 1130 aaKnown RBP21.9■■□□□ 1.1
BRCA1-228ENST00000618469 SHANK3Q9BYB0 1731 aa21.89■■□□□ 1.1
BRCA1-228ENST00000618469 NHSQ6T4R5 1651 aa21.89■■□□□ 1.1
BRCA1-228ENST00000618469 BTAF1O14981 1849 aa21.89■■□□□ 1.09
BRCA1-228ENST00000618469 USHBP1Q8N6Y0 703 aa21.88■■□□□ 1.09
BRCA1-228ENST00000618469 NBPF6Q5VWK0 638 aa21.87■■□□□ 1.09
BRCA1-228ENST00000618469 NBPF4Q96M43 638 aa21.87■■□□□ 1.09
BRCA1-228ENST00000618469 MORC1Q86VD1 984 aa21.86■■□□□ 1.09
BRCA1-228ENST00000618469 LRRC4BQ9NT99 713 aa21.86■■□□□ 1.09
BRCA1-228ENST00000618469 POLKQ9UBT6 870 aa21.86■■□□□ 1.09
BRCA1-228ENST00000618469 PAPPAQ13219 1627 aa21.85■■□□□ 1.09
BRCA1-228ENST00000618469 KCNQ4P56696 695 aa21.84■■□□□ 1.09
BRCA1-228ENST00000618469 AMER1Q5JTC6 1135 aaPredicted RBP21.84■■□□□ 1.09
BRCA1-228ENST00000618469 DOT1LQ8TEK3 1739 aa21.82■■□□□ 1.08
BRCA1-228ENST00000618469 NCAPD2Q15021 1401 aa21.81■■□□□ 1.08
BRCA1-228ENST00000618469 RAPGEF4Q8WZA2 1011 aa21.81■■□□□ 1.08
BRCA1-228ENST00000618469 PKD1L3Q7Z443 1732 aa21.8■■□□□ 1.08
BRCA1-228ENST00000618469 GIGYF1O75420 1035 aaPredicted RBP21.8■■□□□ 1.08
BRCA1-228ENST00000618469 PER1O15534 1290 aaPredicted RBP21.79■■□□□ 1.08
BRCA1-228ENST00000618469 NLGN2Q8NFZ4 835 aa21.79■■□□□ 1.08
BRCA1-228ENST00000618469 DDX54Q8TDD1 881 aaKnown RBP21.79■■□□□ 1.08
BRCA1-228ENST00000618469 TATP17735 454 aaPredicted RBP21.78■■□□□ 1.08
BRCA1-228ENST00000618469 CC2D1BQ5T0F9 858 aaKnown RBP21.78■■□□□ 1.08
BRCA1-228ENST00000618469 TUBGCP6Q96RT7 1819 aa21.78■■□□□ 1.08
BRCA1-228ENST00000618469 EIF4A2Q14240 407 aaKnown RBP21.77■■□□□ 1.08
BRCA1-228ENST00000618469 ZCRB1Q8TBF4 217 aaKnown RBP21.77■■□□□ 1.08
BRCA1-228ENST00000618469 MAP3K5Q99683 1374 aa21.76■■□□□ 1.07
BRCA1-228ENST00000618469 AKT1S1Q96B36 256 aa21.76■■□□□ 1.07
BRCA1-228ENST00000618469 PNPLA7Q6ZV29 1317 aa21.76■■□□□ 1.07
BRCA1-228ENST00000618469 GOLGB1Q14789 3259 aaKnown RBP21.75■■□□□ 1.07
BRCA1-228ENST00000618469 CNGB1Q14028 1251 aaPredicted RBP21.75■■□□□ 1.07
BRCA1-228ENST00000618469 EYA1Q99502 592 aa21.75■■□□□ 1.07
BRCA1-228ENST00000618469 NPC1L1Q9UHC9 1359 aa21.74■■□□□ 1.07
BRCA1-228ENST00000618469 POLD1P28340 1107 aa21.74■■□□□ 1.07
BRCA1-228ENST00000618469 SYTL4Q96C24 671 aaPredicted RBP21.74■■□□□ 1.07
BRCA1-228ENST00000618469 TFCP2L1Q9NZI6 479 aa21.74■■□□□ 1.07
BRCA1-228ENST00000618469 IFFO2Q5TF58 517 aa21.73■■□□□ 1.07
BRCA1-228ENST00000618469 PCDH11XQ9BZA7 1347 aa21.73■■□□□ 1.07
BRCA1-228ENST00000618469 PCDH11YQ9BZA8 1340 aa21.73■■□□□ 1.07
BRCA1-228ENST00000618469 YBX3P16989 372 aaKnown RBP eCLIP21.71■■□□□ 1.07
BRCA1-228ENST00000618469 IGSF1Q8N6C5 1336 aa21.71■■□□□ 1.07
BRCA1-228ENST00000618469 TOGARAM1Q9Y4F4 1720 aa21.71■■□□□ 1.07
BRCA1-228ENST00000618469 MSH5O43196 834 aa21.7■■□□□ 1.06
BRCA1-228ENST00000618469 QSER1Q2KHR3 1735 aa21.69■■□□□ 1.06
BRCA1-228ENST00000618469 PRIM1P49642 420 aaKnown RBP21.68■■□□□ 1.06
BRCA1-228ENST00000618469 MSL1Q68DK7 614 aa21.68■■□□□ 1.06
BRCA1-228ENST00000618469 SLC16A10Q8TF71 515 aa21.68■■□□□ 1.06
BRCA1-228ENST00000618469 COL24A1Q17RW2 1714 aa21.67■■□□□ 1.06
BRCA1-228ENST00000618469 MTHFSP49914 203 aa21.67■■□□□ 1.06
BRCA1-228ENST00000618469 SLC27A3Q5K4L6 730 aa21.66■■□□□ 1.06
BRCA1-228ENST00000618469 CEP350Q5VT06 3117 aa21.66■■□□□ 1.06
BRCA1-228ENST00000618469 CYP27B1O15528 508 aa21.65■■□□□ 1.06
BRCA1-228ENST00000618469 SPG7Q9UQ90 795 aa21.65■■□□□ 1.06
BRCA1-228ENST00000618469 PLEKHG2Q9H7P9 1386 aa21.64■■□□□ 1.06
BRCA1-228ENST00000618469 COL3A1P02461 1466 aaPredicted RBP21.64■■□□□ 1.05
BRCA1-228ENST00000618469 IL13P35225 146 aa21.63■■□□□ 1.05
BRCA1-228ENST00000618469 AEBP1Q8IUX7 1158 aa21.63■■□□□ 1.05
BRCA1-228ENST00000618469 ITGB4P16144 1822 aa21.63■■□□□ 1.05
BRCA1-228ENST00000618469 LY75O60449 1722 aa21.63■■□□□ 1.05
BRCA1-228ENST00000618469 COL23A1Q86Y22 540 aaPredicted RBP21.62■■□□□ 1.05
BRCA1-228ENST00000618469 ZNF526Q8TF50 670 aaPredicted RBP21.62■■□□□ 1.05
BRCA1-228ENST00000618469 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.61■■□□□ 1.05
BRCA1-228ENST00000618469 CCNL1Q9UK58 526 aaPredicted RBP21.61■■□□□ 1.05
BRCA1-228ENST00000618469 WWC3Q9ULE0 1092 aa21.61■■□□□ 1.05
BRCA1-228ENST00000618469 KDRP35968 1356 aa21.61■■□□□ 1.05
BRCA1-228ENST00000618469 SULT6B1Q6IMI4 303 aa21.6■■□□□ 1.05
BRCA1-228ENST00000618469 ATP10DQ9P241 1426 aa21.6■■□□□ 1.05
BRCA1-228ENST00000618469 GRIN3BO60391 1043 aa21.58■■□□□ 1.05
BRCA1-228ENST00000618469 DIAPH1O60610 1272 aaKnown RBP21.58■■□□□ 1.05
BRCA1-228ENST00000618469 PHKG2P15735 406 aa21.57■■□□□ 1.04
BRCA1-228ENST00000618469 IFNL2Q8IZJ0 200 aa21.57■■□□□ 1.04
BRCA1-228ENST00000618469 ZEB1P37275 1124 aaPredicted RBP21.56■■□□□ 1.04
BRCA1-228ENST00000618469 NKX1-1Q15270 411 aaPredicted RBP21.55■■□□□ 1.04
BRCA1-228ENST00000618469 PLEKHO1Q53GL0 409 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms