RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 PLEKHG3A1L390 1219 aa16.89■□□□□ 0.29
CIITA-213ENST00000618327 F6X3S4 739 aa16.89■□□□□ 0.29
CIITA-213ENST00000618327 RNF20Q5VTR2 975 aa16.89■□□□□ 0.29
CIITA-213ENST00000618327 PHACTR3Q96KR7 559 aa16.89■□□□□ 0.29
CIITA-213ENST00000618327 STARD3NLO95772 234 aa16.88■□□□□ 0.29
CIITA-213ENST00000618327 EYA1Q99502 592 aa16.88■□□□□ 0.29
CIITA-213ENST00000618327 CABLES1Q8TDN4 633 aa16.88■□□□□ 0.29
CIITA-213ENST00000618327 ORAI2Q96SN7 254 aa16.88■□□□□ 0.29
CIITA-213ENST00000618327 GZF1Q9H116 711 aaPredicted RBP16.88■□□□□ 0.29
CIITA-213ENST00000618327 DBF4Q9UBU7 674 aaPredicted RBP16.88■□□□□ 0.29
CIITA-213ENST00000618327 PTPRCP08575 1304 aa16.88■□□□□ 0.29
CIITA-213ENST00000618327 HTATSF1O43719 755 aaKnown RBP16.88■□□□□ 0.29
CIITA-213ENST00000618327 BACH2Q9BYV9 841 aa16.88■□□□□ 0.29
CIITA-213ENST00000618327 PLEKHG1Q9ULL1 1385 aa16.88■□□□□ 0.29
CIITA-213ENST00000618327 FLIIQ13045 1269 aa16.87■□□□□ 0.29
CIITA-213ENST00000618327 KDM5AP29375 1690 aaKnown RBP16.87■□□□□ 0.29
CIITA-213ENST00000618327 KIF3AQ9Y496 699 aa16.87■□□□□ 0.29
CIITA-213ENST00000618327 HOXC9P31274 260 aa16.87■□□□□ 0.29
CIITA-213ENST00000618327 MTHFSDQ2M296 383 aaKnown RBP16.87■□□□□ 0.29
CIITA-213ENST00000618327 RSPH6AQ9H0K4 717 aa16.87■□□□□ 0.29
CIITA-213ENST00000618327 SIL1Q9H173 461 aa16.87■□□□□ 0.29
CIITA-213ENST00000618327 LRRC59Q96AG4 307 aaKnown RBP16.87■□□□□ 0.29
CIITA-213ENST00000618327 LARP1Q6PKG0 1096 aaKnown RBP16.86■□□□□ 0.29
CIITA-213ENST00000618327 FSD1Q9BTV5 496 aa16.86■□□□□ 0.29
CIITA-213ENST00000618327 FMNL2Q96PY5 1086 aa16.86■□□□□ 0.29
CIITA-213ENST00000618327 APPP05067 770 aa16.86■□□□□ 0.29
CIITA-213ENST00000618327 EXOC5O00471 708 aa16.85■□□□□ 0.29
CIITA-213ENST00000618327 IP6K1Q92551 441 aa16.85■□□□□ 0.29
CIITA-213ENST00000618327 FOXD4L5Q5VV16 416 aaPredicted RBP16.85■□□□□ 0.29
CIITA-213ENST00000618327 FOXD4L4Q8WXT5 416 aaPredicted RBP16.85■□□□□ 0.29
CIITA-213ENST00000618327 DNAAF4Q8WXU2 420 aa16.85■□□□□ 0.29
CIITA-213ENST00000618327 IL13P35225 146 aa16.84■□□□□ 0.29
CIITA-213ENST00000618327 HYPKQ9NX55 129 aa16.84■□□□□ 0.29
CIITA-213ENST00000618327 NGLY1Q96IV0 654 aa16.84■□□□□ 0.29
CIITA-213ENST00000618327 NLRP1Q9C000 1473 aa16.84■□□□□ 0.29
CIITA-213ENST00000618327 EXOC6BQ9Y2D4 811 aa16.84■□□□□ 0.29
CIITA-213ENST00000618327 AKAP4Q5JQC9 854 aa16.83■□□□□ 0.29
CIITA-213ENST00000618327 CLTCL1P53675 1640 aa16.83■□□□□ 0.28
CIITA-213ENST00000618327 C8orf58Q8NAV2 365 aa16.83■□□□□ 0.28
CIITA-213ENST00000618327 CHMP4CQ96CF2 233 aa16.83■□□□□ 0.28
CIITA-213ENST00000618327 TOM1O60784 492 aa16.82■□□□□ 0.28
CIITA-213ENST00000618327 WASHC4Q2M389 1173 aa16.82■□□□□ 0.28
CIITA-213ENST00000618327 ARHGAP45Q92619 1136 aa16.82■□□□□ 0.28
CIITA-213ENST00000618327 IL1RAPL2Q9NP60 686 aa16.82■□□□□ 0.28
CIITA-213ENST00000618327 CNNM1Q9NRU3 951 aa16.82■□□□□ 0.28
CIITA-213ENST00000618327 SBNO1A3KN83 1393 aa16.82■□□□□ 0.28
CIITA-213ENST00000618327 DNAJC2Q99543 621 aaKnown RBP16.82■□□□□ 0.28
CIITA-213ENST00000618327 CCDC57Q2TAC2 916 aa16.82■□□□□ 0.28
CIITA-213ENST00000618327 SYAP1Q96A49 352 aaPredicted RBP16.82■□□□□ 0.28
CIITA-213ENST00000618327 KIAA2012Q0VF49 1180 aa16.81■□□□□ 0.28
CIITA-213ENST00000618327 CSPP1Q1MSJ5 1256 aa16.81■□□□□ 0.28
CIITA-213ENST00000618327 NOL10Q9BSC4 688 aaKnown RBP16.81■□□□□ 0.28
CIITA-213ENST00000618327 FAM184AQ8NB25 1140 aa16.81■□□□□ 0.28
CIITA-213ENST00000618327 ZCRB1Q8TBF4 217 aaKnown RBP16.81■□□□□ 0.28
CIITA-213ENST00000618327 MYD88Q99836 296 aa16.81■□□□□ 0.28
CIITA-213ENST00000618327 DRC7Q8IY82 874 aa16.8■□□□□ 0.28
CIITA-213ENST00000618327 RNF17Q9BXT8 1623 aaKnown RBP16.8■□□□□ 0.28
CIITA-213ENST00000618327 HIP1O00291 1037 aa16.8■□□□□ 0.28
CIITA-213ENST00000618327 TRDNQ13061 729 aa16.8■□□□□ 0.28
CIITA-213ENST00000618327 SPINK5Q9NQ38 1064 aaPredicted RBP16.8■□□□□ 0.28
CIITA-213ENST00000618327 ARID3AQ99856 593 aa16.79■□□□□ 0.28
CIITA-213ENST00000618327 DDX11L8A8MPP1 907 aa16.79■□□□□ 0.28
CIITA-213ENST00000618327 AACSQ86V21 672 aa16.79■□□□□ 0.28
CIITA-213ENST00000618327 CHMP5Q9NZZ3 219 aa16.79■□□□□ 0.28
CIITA-213ENST00000618327 PIK3R4Q99570 1358 aa16.79■□□□□ 0.28
CIITA-213ENST00000618327 SKAP1Q86WV1 359 aa16.79■□□□□ 0.28
CIITA-213ENST00000618327 H3BQV1 296 aa16.79■□□□□ 0.28
CIITA-213ENST00000618327 IFFO2Q5TF58 517 aa16.79■□□□□ 0.28
CIITA-213ENST00000618327 UBAP1LF5GYI3 381 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 CCDC158Q5M9N0 1113 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 LRRFIP2Q9Y608 721 aaKnown RBP16.78■□□□□ 0.28
CIITA-213ENST00000618327 RIMBP3CA6NJZ7 1639 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 RIMBP3BA6NNM3 1639 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 RIMBP3Q9UFD9 1639 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 SNRPA1P09661 255 aaKnown RBP16.78■□□□□ 0.28
CIITA-213ENST00000618327 SPHKAPQ2M3C7 1700 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 INSRP06213 1382 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 PI4KAP2A4QPH2 592 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 PI4KAP1Q8N8J0 262 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 ATP6V1DQ9Y5K8 247 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 ROBO2Q9HCK4 1378 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 VAMP4O75379 141 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 SYNE3Q6ZMZ3 975 aa16.78■□□□□ 0.28
CIITA-213ENST00000618327 MRPL50Q8N5N7 158 aaKnown RBP16.77■□□□□ 0.28
CIITA-213ENST00000618327 KIF1BPQ96EK5 621 aa16.77■□□□□ 0.28
CIITA-213ENST00000618327 MAP3K5Q99683 1374 aa16.77■□□□□ 0.28
CIITA-213ENST00000618327 ANXA1P04083 346 aa16.77■□□□□ 0.28
CIITA-213ENST00000618327 TSPYL6Q8N831 410 aa16.77■□□□□ 0.28
CIITA-213ENST00000618327 MAP3K4Q9Y6R4 1608 aa16.77■□□□□ 0.27
CIITA-213ENST00000618327 CPLX2Q6PUV4 134 aaKnown RBP16.77■□□□□ 0.27
CIITA-213ENST00000618327 AMOTL1Q8IY63 956 aa16.77■□□□□ 0.27
CIITA-213ENST00000618327 GOLGA6L3A6NEY3 463 aa16.76■□□□□ 0.27
CIITA-213ENST00000618327 CEP126Q9P2H0 1117 aa16.76■□□□□ 0.27
CIITA-213ENST00000618327 TBC1D2BQ9UPU7 963 aa16.76■□□□□ 0.27
CIITA-213ENST00000618327 MAP3K2Q9Y2U5 619 aa16.76■□□□□ 0.27
CIITA-213ENST00000618327 SYNMO15061 1565 aa16.76■□□□□ 0.27
CIITA-213ENST00000618327 RAB11FIP3O75154 756 aa16.76■□□□□ 0.27
CIITA-213ENST00000618327 MPHOSPH8Q99549 860 aa16.76■□□□□ 0.27
CIITA-213ENST00000618327 A2ML1A8K2U0 1454 aa16.75■□□□□ 0.27
CIITA-213ENST00000618327 TTC39AQ5SRH9 613 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms