RNA–Protein interactions for RNA: ENST00000617930.1

CNOT3-209, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-209ENST00000617930 TRIM27P14373 513 aa22.48■■□□□ 1.19
CNOT3-209ENST00000617930 ANP32AP39687 249 aaKnown RBP22.48■■□□□ 1.19
CNOT3-209ENST00000617930 ZKSCAN2Q63HK3 967 aa22.48■■□□□ 1.19
CNOT3-209ENST00000617930 VAMP4O75379 141 aa22.48■■□□□ 1.19
CNOT3-209ENST00000617930 NOB1Q9ULX3 412 aaKnown RBP22.48■■□□□ 1.19
CNOT3-209ENST00000617930 PCDHB15Q9Y5E8 787 aa22.47■■□□□ 1.19
CNOT3-209ENST00000617930 ZC3H6P61129 1189 aaKnown RBP22.47■■□□□ 1.19
CNOT3-209ENST00000617930 COL18A1P39060 1754 aa22.46■■□□□ 1.19
CNOT3-209ENST00000617930 CFAP44Q96MT7 982 aa22.46■■□□□ 1.19
CNOT3-209ENST00000617930 GNAI1P63096 354 aa22.45■■□□□ 1.18
CNOT3-209ENST00000617930 USHBP1Q8N6Y0 703 aa22.45■■□□□ 1.18
CNOT3-209ENST00000617930 ROBO1Q9Y6N7 1651 aa22.45■■□□□ 1.18
CNOT3-209ENST00000617930 MVPQ14764 893 aaKnown RBP22.44■■□□□ 1.18
CNOT3-209ENST00000617930 MCM10Q7L590 875 aa22.44■■□□□ 1.18
CNOT3-209ENST00000617930 DZIP1LQ8IYY4 767 aaKnown RBP22.44■■□□□ 1.18
CNOT3-209ENST00000617930 C8orf58Q8NAV2 365 aa22.44■■□□□ 1.18
CNOT3-209ENST00000617930 ELL2O00472 640 aaPredicted RBP22.43■■□□□ 1.18
CNOT3-209ENST00000617930 NBPF6Q5VWK0 638 aa22.43■■□□□ 1.18
CNOT3-209ENST00000617930 LRRC59Q96AG4 307 aaKnown RBP22.43■■□□□ 1.18
CNOT3-209ENST00000617930 NBPF4Q96M43 638 aa22.43■■□□□ 1.18
CNOT3-209ENST00000617930 ABCA3Q99758 1704 aa22.43■■□□□ 1.18
CNOT3-209ENST00000617930 CALD1Q05682 793 aaKnown RBP22.43■■□□□ 1.18
CNOT3-209ENST00000617930 LMOD3Q0VAK6 560 aa22.43■■□□□ 1.18
CNOT3-209ENST00000617930 MTHFSDQ2M296 383 aaKnown RBP22.43■■□□□ 1.18
CNOT3-209ENST00000617930 ATF7IPQ6VMQ6 1270 aa22.43■■□□□ 1.18
CNOT3-209ENST00000617930 MS4A1P11836 297 aa22.42■■□□□ 1.18
CNOT3-209ENST00000617930 PDE4AP27815 886 aa22.42■■□□□ 1.18
CNOT3-209ENST00000617930 ALDH1L2Q3SY69 923 aa22.42■■□□□ 1.18
CNOT3-209ENST00000617930 BACH2Q9BYV9 841 aa22.4■■□□□ 1.18
CNOT3-209ENST00000617930 CAMTA1Q9Y6Y1 1673 aa22.4■■□□□ 1.18
CNOT3-209ENST00000617930 MRPL50Q8N5N7 158 aaKnown RBP22.4■■□□□ 1.18
CNOT3-209ENST00000617930 BRPF1P55201 1214 aaPredicted RBP22.39■■□□□ 1.17
CNOT3-209ENST00000617930 CHRNA2Q15822 529 aa22.38■■□□□ 1.17
CNOT3-209ENST00000617930 KRT24Q2M2I5 525 aa22.38■■□□□ 1.17
CNOT3-209ENST00000617930 CRB1P82279 1406 aa22.38■■□□□ 1.17
CNOT3-209ENST00000617930 CHL1O00533 1208 aa22.38■■□□□ 1.17
CNOT3-209ENST00000617930 FTSJ3Q8IY81 847 aaKnown RBP22.38■■□□□ 1.17
CNOT3-209ENST00000617930 TMEM57Q8N5G2 664 aa22.38■■□□□ 1.17
CNOT3-209ENST00000617930 IPO9Q96P70 1041 aaKnown RBP22.38■■□□□ 1.17
CNOT3-209ENST00000617930 NCAPD2Q15021 1401 aa22.38■■□□□ 1.17
CNOT3-209ENST00000617930 KIAA0232Q92628 1395 aa22.37■■□□□ 1.17
CNOT3-209ENST00000617930 ANKRD24Q8TF21 1146 aa22.37■■□□□ 1.17
CNOT3-209ENST00000617930 LMO7Q8WWI1 1683 aa22.37■■□□□ 1.17
CNOT3-209ENST00000617930 TWISTNBQ3B726 338 aaPredicted RBP22.36■■□□□ 1.17
CNOT3-209ENST00000617930 ZNF428Q96B54 188 aa22.36■■□□□ 1.17
CNOT3-209ENST00000617930 AAMPQ13685 434 aa22.35■■□□□ 1.17
CNOT3-209ENST00000617930 ERBB3P21860 1342 aa22.35■■□□□ 1.17
CNOT3-209ENST00000617930 KIF16BQ96L93 1317 aa22.35■■□□□ 1.17
CNOT3-209ENST00000617930 AHDC1Q5TGY3 1603 aaPredicted RBP22.35■■□□□ 1.17
CNOT3-209ENST00000617930 CPDO75976 1380 aa22.34■■□□□ 1.17
CNOT3-209ENST00000617930 RGS3P49796 1198 aa22.33■■□□□ 1.17
CNOT3-209ENST00000617930 MIS18AQ9NYP9 233 aa22.33■■□□□ 1.17
CNOT3-209ENST00000617930 FAM208AQ9UK61 1670 aaKnown RBP22.33■■□□□ 1.17
CNOT3-209ENST00000617930 ITPRIPQ8IWB1 547 aa22.33■■□□□ 1.16
CNOT3-209ENST00000617930 ZBTB47Q9UFB7 747 aaPredicted RBP22.31■■□□□ 1.16
CNOT3-209ENST00000617930 IPO8O15397 1037 aaKnown RBP22.31■■□□□ 1.16
CNOT3-209ENST00000617930 ZBTB40Q9NUA8 1239 aa22.3■■□□□ 1.16
CNOT3-209ENST00000617930 DDX19BQ9UMR2 479 aa22.3■■□□□ 1.16
CNOT3-209ENST00000617930 ABCC6O95255 1503 aa22.28■■□□□ 1.16
CNOT3-209ENST00000617930 ARHGAP45Q92619 1136 aa22.28■■□□□ 1.16
CNOT3-209ENST00000617930 C8orf34Q49A92 452 aa22.28■■□□□ 1.16
CNOT3-209ENST00000617930 LRRC37A3O60309 1634 aa22.28■■□□□ 1.16
CNOT3-209ENST00000617930 COL16A1Q07092 1604 aaPredicted RBP22.27■■□□□ 1.16
CNOT3-209ENST00000617930 NPM2Q86SE8 214 aaKnown RBP22.27■■□□□ 1.16
CNOT3-209ENST00000617930 GAS2L2Q8NHY3 880 aa22.27■■□□□ 1.16
CNOT3-209ENST00000617930 NBR1Q14596 966 aa22.26■■□□□ 1.15
CNOT3-209ENST00000617930 IL17REQ8NFR9 667 aa22.26■■□□□ 1.15
CNOT3-209ENST00000617930 BCL11AQ9H165 835 aa22.26■■□□□ 1.15
CNOT3-209ENST00000617930 ZBTB7BO15156 539 aaPredicted RBP22.24■■□□□ 1.15
CNOT3-209ENST00000617930 RTF1Q92541 710 aaKnown RBP22.24■■□□□ 1.15
CNOT3-209ENST00000617930 RWDD1Q9H446 243 aaPredicted RBP22.24■■□□□ 1.15
CNOT3-209ENST00000617930 ABCC4O15439 1325 aa22.24■■□□□ 1.15
CNOT3-209ENST00000617930 PHLPP1O60346 1717 aa22.24■■□□□ 1.15
CNOT3-209ENST00000617930 PDZRN3Q9UPQ7 1066 aa22.24■■□□□ 1.15
CNOT3-209ENST00000617930 COL22A1Q8NFW1 1626 aaPredicted RBP22.24■■□□□ 1.15
CNOT3-209ENST00000617930 PRDM11Q9NQV5 511 aa22.23■■□□□ 1.15
CNOT3-209ENST00000617930 GNAT3A8MTJ3 354 aa22.23■■□□□ 1.15
CNOT3-209ENST00000617930 MEGF6O75095 1541 aa22.23■■□□□ 1.15
CNOT3-209ENST00000617930 PIP4K2BP78356 416 aa22.22■■□□□ 1.15
CNOT3-209ENST00000617930 HDAC1Q13547 482 aaPredicted RBP22.22■■□□□ 1.15
CNOT3-209ENST00000617930 COL5A2P05997 1499 aaPredicted RBP22.22■■□□□ 1.15
CNOT3-209ENST00000617930 HTATSF1O43719 755 aaKnown RBP22.21■■□□□ 1.15
CNOT3-209ENST00000617930 NLRP2Q9NX02 1062 aa22.21■■□□□ 1.15
CNOT3-209ENST00000617930 TSPYL4Q9UJ04 414 aa22.21■■□□□ 1.15
CNOT3-209ENST00000617930 MAP3K5Q99683 1374 aa22.21■■□□□ 1.15
CNOT3-209ENST00000617930 RGS12O14924 1447 aa22.21■■□□□ 1.15
CNOT3-209ENST00000617930 AEBP2Q6ZN18 517 aaPredicted RBP22.21■■□□□ 1.15
CNOT3-209ENST00000617930 FAM161AQ3B820 660 aa22.2■■□□□ 1.14
CNOT3-209ENST00000617930 HAP1P54257 671 aaPredicted RBP22.18■■□□□ 1.14
CNOT3-209ENST00000617930 VIRMAQ69YN4 1812 aaKnown RBP22.18■■□□□ 1.14
CNOT3-209ENST00000617930 CSB-PGBD3P0DP91 1061 aa22.17■■□□□ 1.14
CNOT3-209ENST00000617930 C1orf115Q9H7X2 142 aa22.17■■□□□ 1.14
CNOT3-209ENST00000617930 LGR6Q9HBX8 967 aa22.17■■□□□ 1.14
CNOT3-209ENST00000617930 DEKP35659 375 aaKnown RBP22.16■■□□□ 1.14
CNOT3-209ENST00000617930 SMC5Q8IY18 1101 aa22.16■■□□□ 1.14
CNOT3-209ENST00000617930 CEMIPQ8WUJ3 1361 aa22.15■■□□□ 1.14
CNOT3-209ENST00000617930 WDR17Q8IZU2 1322 aa22.15■■□□□ 1.14
CNOT3-209ENST00000617930 TOM1O60784 492 aa22.15■■□□□ 1.14
CNOT3-209ENST00000617930 RTL5Q5HYW3 569 aaPredicted RBP22.15■■□□□ 1.14
CNOT3-209ENST00000617930 ZNF530Q6P9A1 599 aaPredicted RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms