RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 PUS7Q96PZ0 661 aaKnown RBP12.06□□□□□ -0.48
GPC6-202ENST00000617456 SLC12A5Q9H2X9 1139 aa12.06□□□□□ -0.48
GPC6-202ENST00000617456 MON2Q7Z3U7 1717 aa12.05□□□□□ -0.48
GPC6-202ENST00000617456 YBX3P16989 372 aaKnown RBP eCLIP12.04□□□□□ -0.48
GPC6-202ENST00000617456 IP6K1Q92551 441 aa12.04□□□□□ -0.48
GPC6-202ENST00000617456 LTN1O94822 1766 aa12.04□□□□□ -0.48
GPC6-202ENST00000617456 GOLGB1Q14789 3259 aaKnown RBP12.04□□□□□ -0.48
GPC6-202ENST00000617456 CD163L1Q9NR16 1453 aa12.03□□□□□ -0.48
GPC6-202ENST00000617456 MSL1Q68DK7 614 aa12.03□□□□□ -0.48
GPC6-202ENST00000617456 CCNL1Q9UK58 526 aaPredicted RBP12.03□□□□□ -0.48
GPC6-202ENST00000617456 GRIN3BO60391 1043 aa12.02□□□□□ -0.49
GPC6-202ENST00000617456 IFFO2Q5TF58 517 aa12.02□□□□□ -0.49
GPC6-202ENST00000617456 CARD11Q9BXL7 1154 aa12.02□□□□□ -0.49
GPC6-202ENST00000617456 TERF2IPQ9NYB0 399 aa12.02□□□□□ -0.49
GPC6-202ENST00000617456 EDC4Q6P2E9 1401 aaKnown RBP12.02□□□□□ -0.49
GPC6-202ENST00000617456 AMPHP49418 695 aa12.01□□□□□ -0.49
GPC6-202ENST00000617456 COL23A1Q86Y22 540 aaPredicted RBP12.01□□□□□ -0.49
GPC6-202ENST00000617456 ZCRB1Q8TBF4 217 aaKnown RBP12.01□□□□□ -0.49
GPC6-202ENST00000617456 ANKRD36BQ8N2N9 1353 aa12.01□□□□□ -0.49
GPC6-202ENST00000617456 TONSLQ96HA7 1378 aa12.01□□□□□ -0.49
GPC6-202ENST00000617456 CEP350Q5VT06 3117 aa12.01□□□□□ -0.49
GPC6-202ENST00000617456 FBLN1P23142 703 aa12□□□□□ -0.49
GPC6-202ENST00000617456 TIMELESSQ9UNS1 1208 aa12□□□□□ -0.49
GPC6-202ENST00000617456 A0A1W2PP64 1363 aa12□□□□□ -0.49
GPC6-202ENST00000617456 NSD2O96028 1365 aa12□□□□□ -0.49
GPC6-202ENST00000617456 USP54Q70EL1 1684 aa12□□□□□ -0.49
GPC6-202ENST00000617456 SHANK3Q9BYB0 1731 aa12□□□□□ -0.49
GPC6-202ENST00000617456 TUBGCP6Q96RT7 1819 aa12□□□□□ -0.49
GPC6-202ENST00000617456 CENPBP07199 599 aaPredicted RBP11.99□□□□□ -0.49
GPC6-202ENST00000617456 HOXC9P31274 260 aa11.99□□□□□ -0.49
GPC6-202ENST00000617456 MAP3K19Q56UN5 1328 aa11.99□□□□□ -0.49
GPC6-202ENST00000617456 QSER1Q2KHR3 1735 aa11.99□□□□□ -0.49
GPC6-202ENST00000617456 DOT1LQ8TEK3 1739 aa11.98□□□□□ -0.49
GPC6-202ENST00000617456 ATP10DQ9P241 1426 aa11.98□□□□□ -0.49
GPC6-202ENST00000617456 USP47Q96K76 1375 aa11.98□□□□□ -0.49
GPC6-202ENST00000617456 USHBP1Q8N6Y0 703 aa11.98□□□□□ -0.49
GPC6-202ENST00000617456 ZNF526Q8TF50 670 aaPredicted RBP11.98□□□□□ -0.49
GPC6-202ENST00000617456 COG3Q96JB2 828 aa11.98□□□□□ -0.49
GPC6-202ENST00000617456 CLSPNQ9HAW4 1339 aa11.97□□□□□ -0.49
GPC6-202ENST00000617456 ZBTB22O15209 634 aa11.97□□□□□ -0.49
GPC6-202ENST00000617456 WWC3Q9ULE0 1092 aa11.97□□□□□ -0.49
GPC6-202ENST00000617456 COL24A1Q17RW2 1714 aa11.97□□□□□ -0.49
GPC6-202ENST00000617456 MEGF6O75095 1541 aa11.96□□□□□ -0.49
GPC6-202ENST00000617456 GPBP1L1Q9HC44 474 aaPredicted RBP11.96□□□□□ -0.49
GPC6-202ENST00000617456 RRS1Q15050 365 aaKnown RBP11.95□□□□□ -0.5
GPC6-202ENST00000617456 NBPF6Q5VWK0 638 aa11.95□□□□□ -0.5
GPC6-202ENST00000617456 RAPGEF4Q8WZA2 1011 aa11.95□□□□□ -0.5
GPC6-202ENST00000617456 NBPF4Q96M43 638 aa11.95□□□□□ -0.5
GPC6-202ENST00000617456 LY75O60449 1722 aa11.94□□□□□ -0.5
GPC6-202ENST00000617456 FAM208AQ9UK61 1670 aaKnown RBP11.94□□□□□ -0.5
GPC6-202ENST00000617456 CD2APQ9Y5K6 639 aa11.94□□□□□ -0.5
GPC6-202ENST00000617456 RGPD2P0DJD1 1756 aa11.93□□□□□ -0.5
GPC6-202ENST00000617456 PHF14O94880 888 aa11.93□□□□□ -0.5
GPC6-202ENST00000617456 TATP17735 454 aaPredicted RBP11.93□□□□□ -0.5
GPC6-202ENST00000617456 MPRIPQ6WCQ1 1025 aa11.93□□□□□ -0.5
GPC6-202ENST00000617456 SMIM5Q71RC9 77 aa11.93□□□□□ -0.5
GPC6-202ENST00000617456 PALLDQ8WX93 1383 aa11.92□□□□□ -0.5
GPC6-202ENST00000617456 FLAD1Q8NFF5 587 aa11.92□□□□□ -0.5
GPC6-202ENST00000617456 AK7Q96M32 723 aa11.92□□□□□ -0.5
GPC6-202ENST00000617456 GGNBP2Q9H3C7 697 aa11.92□□□□□ -0.5
GPC6-202ENST00000617456 HSPA6P17066 643 aa11.91□□□□□ -0.5
GPC6-202ENST00000617456 CNKSR2Q8WXI2 1034 aa11.91□□□□□ -0.5
GPC6-202ENST00000617456 RTL1A6NKG5 1358 aa11.91□□□□□ -0.5
GPC6-202ENST00000617456 CGNL1Q0VF96 1302 aa11.9□□□□□ -0.5
GPC6-202ENST00000617456 IGSF1Q8N6C5 1336 aa11.9□□□□□ -0.5
GPC6-202ENST00000617456 ST20-MTHFSA0A0A6YYL1 179 aa11.9□□□□□ -0.5
GPC6-202ENST00000617456 SMG6Q86US8 1419 aaKnown RBP11.9□□□□□ -0.5
GPC6-202ENST00000617456 AMIGO3Q86WK7 504 aa11.9□□□□□ -0.5
GPC6-202ENST00000617456 TESK2Q96S53 571 aa11.9□□□□□ -0.5
GPC6-202ENST00000617456 PCDH11XQ9BZA7 1347 aa11.89□□□□□ -0.51
GPC6-202ENST00000617456 PCDH11YQ9BZA8 1340 aa11.89□□□□□ -0.51
GPC6-202ENST00000617456 CDCA8Q53HL2 280 aa11.89□□□□□ -0.51
GPC6-202ENST00000617456 HSP90AB2PQ58FF8 381 aa11.89□□□□□ -0.51
GPC6-202ENST00000617456 C5P01031 1676 aa11.89□□□□□ -0.51
GPC6-202ENST00000617456 ADCY9O60503 1353 aa11.89□□□□□ -0.51
GPC6-202ENST00000617456 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.88□□□□□ -0.51
GPC6-202ENST00000617456 FYB1O15117 783 aa11.88□□□□□ -0.51
GPC6-202ENST00000617456 CYP27B1O15528 508 aa11.88□□□□□ -0.51
GPC6-202ENST00000617456 HMGB2P26583 209 aaKnown RBP11.88□□□□□ -0.51
GPC6-202ENST00000617456 SMARCC1Q92922 1105 aaPredicted RBP11.88□□□□□ -0.51
GPC6-202ENST00000617456 PIGBQ92521 554 aa11.87□□□□□ -0.51
GPC6-202ENST00000617456 TMF1P82094 1093 aa11.86□□□□□ -0.51
GPC6-202ENST00000617456 LINC00116Q8NCU8 138 aa11.86□□□□□ -0.51
GPC6-202ENST00000617456 C4BP0C0L5 1744 aa11.86□□□□□ -0.51
GPC6-202ENST00000617456 INSRP06213 1382 aa11.85□□□□□ -0.51
GPC6-202ENST00000617456 KIF3CO14782 793 aa11.85□□□□□ -0.51
GPC6-202ENST00000617456 TAF1LQ8IZX4 1826 aa11.85□□□□□ -0.51
GPC6-202ENST00000617456 FLT4P35916 1363 aa11.84□□□□□ -0.51
GPC6-202ENST00000617456 LOC102724428A0A0B4J2F2 783 aa11.84□□□□□ -0.51
GPC6-202ENST00000617456 GNPATO15228 680 aa11.84□□□□□ -0.51
GPC6-202ENST00000617456 PPM1GO15355 546 aaPredicted RBP11.84□□□□□ -0.51
GPC6-202ENST00000617456 SSFA2P28290 1259 aa11.84□□□□□ -0.51
GPC6-202ENST00000617456 SIK1P57059 783 aa11.84□□□□□ -0.51
GPC6-202ENST00000617456 TMOD3Q9NYL9 352 aa11.83□□□□□ -0.52
GPC6-202ENST00000617456 EMILIN1Q9Y6C2 1016 aa11.83□□□□□ -0.52
GPC6-202ENST00000617456 NSD3Q9BZ95 1437 aa11.83□□□□□ -0.52
GPC6-202ENST00000617456 MMP10P09238 476 aa11.82□□□□□ -0.52
GPC6-202ENST00000617456 ATP6V1AP38606 617 aa11.82□□□□□ -0.52
GPC6-202ENST00000617456 ITPK1Q13572 414 aa11.82□□□□□ -0.52
GPC6-202ENST00000617456 UBE2Q2Q8WVN8 375 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms