RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 IGHDP01880 384 aa10.02□□□□□ -0.81
NEK3-207ENST00000617054 TRIM27P14373 513 aa10.02□□□□□ -0.81
NEK3-207ENST00000617054 GNAI1P63096 354 aa10.02□□□□□ -0.81
NEK3-207ENST00000617054 STRCQ7RTU9 1775 aa10.02□□□□□ -0.81
NEK3-207ENST00000617054 MSH6P52701 1360 aa10.01□□□□□ -0.81
NEK3-207ENST00000617054 ZNF853P0CG23 659 aa10.01□□□□□ -0.81
NEK3-207ENST00000617054 TWISTNBQ3B726 338 aaPredicted RBP10.01□□□□□ -0.81
NEK3-207ENST00000617054 ARHGEF25Q86VW2 580 aa10.01□□□□□ -0.81
NEK3-207ENST00000617054 FTSJ3Q8IY81 847 aaKnown RBP10.01□□□□□ -0.81
NEK3-207ENST00000617054 KCNH5Q8NCM2 988 aa10.01□□□□□ -0.81
NEK3-207ENST00000617054 RTF1Q92541 710 aaKnown RBP10.01□□□□□ -0.81
NEK3-207ENST00000617054 IFT57Q9NWB7 429 aa10.01□□□□□ -0.81
NEK3-207ENST00000617054 BRINP3Q76B58 766 aa10.01□□□□□ -0.81
NEK3-207ENST00000617054 PDE3AQ14432 1141 aa10□□□□□ -0.81
NEK3-207ENST00000617054 ZKSCAN2Q63HK3 967 aa10□□□□□ -0.81
NEK3-207ENST00000617054 NECTIN2Q92692 538 aa10□□□□□ -0.81
NEK3-207ENST00000617054 LMOD3Q0VAK6 560 aa10□□□□□ -0.81
NEK3-207ENST00000617054 SLAIN2Q9P270 581 aa10□□□□□ -0.81
NEK3-207ENST00000617054 ARHGEF10O15013 1369 aa10□□□□□ -0.81
NEK3-207ENST00000617054 LTN1O94822 1766 aa9.99□□□□□ -0.81
NEK3-207ENST00000617054 ITPRIPQ8IWB1 547 aa9.99□□□□□ -0.81
NEK3-207ENST00000617054 DZIP1LQ8IYY4 767 aaKnown RBP9.99□□□□□ -0.81
NEK3-207ENST00000617054 ANKRD24Q8TF21 1146 aa9.99□□□□□ -0.81
NEK3-207ENST00000617054 PCDHB15Q9Y5E8 787 aa9.99□□□□□ -0.81
NEK3-207ENST00000617054 IL17REQ8NFR9 667 aa9.99□□□□□ -0.81
NEK3-207ENST00000617054 LGR6Q9HBX8 967 aa9.99□□□□□ -0.81
NEK3-207ENST00000617054 KDRP35968 1356 aa9.99□□□□□ -0.81
NEK3-207ENST00000617054 RGPD1P0DJD0 1748 aa9.98□□□□□ -0.81
NEK3-207ENST00000617054 CALD1Q05682 793 aaKnown RBP9.98□□□□□ -0.81
NEK3-207ENST00000617054 ATF7IPQ6VMQ6 1270 aa9.98□□□□□ -0.81
NEK3-207ENST00000617054 TMEM57Q8N5G2 664 aa9.98□□□□□ -0.81
NEK3-207ENST00000617054 NFAT5O94916 1531 aa9.98□□□□□ -0.81
NEK3-207ENST00000617054 RGS3P49796 1198 aa9.98□□□□□ -0.81
NEK3-207ENST00000617054 TSPYL4Q9UJ04 414 aa9.98□□□□□ -0.81
NEK3-207ENST00000617054 RGPD2P0DJD1 1756 aa9.98□□□□□ -0.81
NEK3-207ENST00000617054 GNAT3A8MTJ3 354 aa9.97□□□□□ -0.81
NEK3-207ENST00000617054 CHL1O00533 1208 aa9.97□□□□□ -0.81
NEK3-207ENST00000617054 ATXN8OSP0DMR3 200 aa9.97□□□□□ -0.81
NEK3-207ENST00000617054 NPHP3Q7Z494 1330 aa9.97□□□□□ -0.81
NEK3-207ENST00000617054 MPRIPQ6WCQ1 1025 aa9.97□□□□□ -0.81
NEK3-207ENST00000617054 KDM2BQ8NHM5 1336 aa9.97□□□□□ -0.81
NEK3-207ENST00000617054 GAS2L2Q8NHY3 880 aa9.97□□□□□ -0.81
NEK3-207ENST00000617054 NLRP2Q9NX02 1062 aa9.97□□□□□ -0.81
NEK3-207ENST00000617054 MVPQ14764 893 aaKnown RBP9.96□□□□□ -0.81
NEK3-207ENST00000617054 MRPL50Q8N5N7 158 aaKnown RBP9.96□□□□□ -0.81
NEK3-207ENST00000617054 XIRP1Q702N8 1843 aaKnown RBP9.96□□□□□ -0.81
NEK3-207ENST00000617054 CT47B1P0C2W7 299 aaPredicted RBP9.95□□□□□ -0.82
NEK3-207ENST00000617054 CSB-PGBD3P0DP91 1061 aa9.95□□□□□ -0.82
NEK3-207ENST00000617054 MKRN4PQ13434 485 aaPredicted RBP9.95□□□□□ -0.82
NEK3-207ENST00000617054 HOMEZQ8IX15 550 aa9.95□□□□□ -0.82
NEK3-207ENST00000617054 BCL11AQ9H165 835 aa9.95□□□□□ -0.82
NEK3-207ENST00000617054 USP19O94966 1318 aa9.95□□□□□ -0.82
NEK3-207ENST00000617054 CRB1P82279 1406 aa9.95□□□□□ -0.82
NEK3-207ENST00000617054 SPDYE4A6NLX3 237 aa9.95□□□□□ -0.82
NEK3-207ENST00000617054 C1orf115Q9H7X2 142 aa9.95□□□□□ -0.82
NEK3-207ENST00000617054 MED1Q15648 1581 aaPredicted RBP9.95□□□□□ -0.82
NEK3-207ENST00000617054 TRPM3Q9HCF6 1732 aaPredicted RBP9.94□□□□□ -0.82
NEK3-207ENST00000617054 KCNQ3O43525 872 aa9.94□□□□□ -0.82
NEK3-207ENST00000617054 SPATA31A3Q5VYP0 1347 aa9.94□□□□□ -0.82
NEK3-207ENST00000617054 RGPD5Q99666 1765 aa9.94□□□□□ -0.82
NEK3-207ENST00000617054 ALDH1L2Q3SY69 923 aa9.94□□□□□ -0.82
NEK3-207ENST00000617054 ZNF530Q6P9A1 599 aaPredicted RBP9.94□□□□□ -0.82
NEK3-207ENST00000617054 CENPQQ7L2Z9 268 aaPredicted RBP9.94□□□□□ -0.82
NEK3-207ENST00000617054 ARID3AQ99856 593 aa9.94□□□□□ -0.82
NEK3-207ENST00000617054 KIAA0232Q92628 1395 aa9.94□□□□□ -0.82
NEK3-207ENST00000617054 ERBB3P21860 1342 aa9.93□□□□□ -0.82
NEK3-207ENST00000617054 KIF24Q5T7B8 1368 aa9.93□□□□□ -0.82
NEK3-207ENST00000617054 G2E3Q7L622 706 aa9.93□□□□□ -0.82
NEK3-207ENST00000617054 RTL1A6NKG5 1358 aa9.93□□□□□ -0.82
NEK3-207ENST00000617054 IPO8O15397 1037 aaKnown RBP9.93□□□□□ -0.82
NEK3-207ENST00000617054 MAP3K5Q99683 1374 aa9.92□□□□□ -0.82
NEK3-207ENST00000617054 KIF16BQ96L93 1317 aa9.92□□□□□ -0.82
NEK3-207ENST00000617054 DCCP43146 1447 aa9.92□□□□□ -0.82
NEK3-207ENST00000617054 USP35Q9P2H5 1018 aa9.92□□□□□ -0.82
NEK3-207ENST00000617054 F6X3S4 739 aa9.92□□□□□ -0.82
NEK3-207ENST00000617054 EIF2S2P20042 333 aaKnown RBP9.91□□□□□ -0.82
NEK3-207ENST00000617054 TAF7Q15545 349 aaPredicted RBP9.91□□□□□ -0.82
NEK3-207ENST00000617054 SLIT3O75094 1523 aa9.91□□□□□ -0.82
NEK3-207ENST00000617054 PXDNQ92626 1479 aa9.91□□□□□ -0.82
NEK3-207ENST00000617054 TNS3Q68CZ2 1445 aa9.91□□□□□ -0.82
NEK3-207ENST00000617054 PRDM11Q9NQV5 511 aa9.91□□□□□ -0.82
NEK3-207ENST00000617054 STRN4Q9NRL3 753 aa9.91□□□□□ -0.82
NEK3-207ENST00000617054 KIF1AQ12756 1690 aa9.91□□□□□ -0.82
NEK3-207ENST00000617054 NCOA3Q9Y6Q9 1424 aa9.91□□□□□ -0.82
NEK3-207ENST00000617054 ECM2O94769 699 aaPredicted RBP9.9□□□□□ -0.82
NEK3-207ENST00000617054 PLEKHO1Q53GL0 409 aaPredicted RBP9.9□□□□□ -0.82
NEK3-207ENST00000617054 SLC4A10Q6U841 1118 aa9.9□□□□□ -0.82
NEK3-207ENST00000617054 NPM2Q86SE8 214 aaKnown RBP9.9□□□□□ -0.82
NEK3-207ENST00000617054 DDX19BQ9UMR2 479 aa9.9□□□□□ -0.82
NEK3-207ENST00000617054 USP54Q70EL1 1684 aa9.9□□□□□ -0.82
NEK3-207ENST00000617054 ALS2Q96Q42 1657 aa9.9□□□□□ -0.82
NEK3-207ENST00000617054 PRAMEF22A3QJZ6 481 aa9.9□□□□□ -0.83
NEK3-207ENST00000617054 ANXA1P04083 346 aa9.9□□□□□ -0.83
NEK3-207ENST00000617054 PDE4AP27815 886 aa9.9□□□□□ -0.83
NEK3-207ENST00000617054 C1orf141Q5JVX7 400 aa9.9□□□□□ -0.83
NEK3-207ENST00000617054 ZNF428Q96B54 188 aa9.9□□□□□ -0.83
NEK3-207ENST00000617054 ZBTB40Q9NUA8 1239 aa9.9□□□□□ -0.83
NEK3-207ENST00000617054 TEFQ10587 303 aa9.89□□□□□ -0.83
NEK3-207ENST00000617054 NBR1Q14596 966 aa9.89□□□□□ -0.83
NEK3-207ENST00000617054 RAPGEF4Q8WZA2 1011 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms