RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 HMOX1P09601 288 aa7.81□□□□□ -1.16
CPNE3-208ENST00000614678 FAM196AQ6ZSG2 479 aa7.81□□□□□ -1.16
CPNE3-208ENST00000614678 ANO8Q9HCE9 1232 aaPredicted RBP7.81□□□□□ -1.16
CPNE3-208ENST00000614678 R3HDM1Q15032 1099 aaKnown RBP7.8□□□□□ -1.16
CPNE3-208ENST00000614678 PRIM1P49642 420 aaKnown RBP7.8□□□□□ -1.16
CPNE3-208ENST00000614678 TNS2Q63HR2 1409 aa7.8□□□□□ -1.16
CPNE3-208ENST00000614678 OVOS2A0A0G2JMS6 1433 aa7.79□□□□□ -1.16
CPNE3-208ENST00000614678 LRRC4BQ9NT99 713 aa7.79□□□□□ -1.16
CPNE3-208ENST00000614678 ZCRB1Q8TBF4 217 aaKnown RBP7.79□□□□□ -1.16
CPNE3-208ENST00000614678 IL13P35225 146 aa7.78□□□□□ -1.16
CPNE3-208ENST00000614678 SF3B2Q13435 895 aaKnown RBP7.78□□□□□ -1.16
CPNE3-208ENST00000614678 SULT6B1Q6IMI4 303 aa7.78□□□□□ -1.16
CPNE3-208ENST00000614678 RTL1A6NKG5 1358 aa7.78□□□□□ -1.16
CPNE3-208ENST00000614678 DOT1LQ8TEK3 1739 aa7.78□□□□□ -1.16
CPNE3-208ENST00000614678 TOGARAM1Q9Y4F4 1720 aa7.78□□□□□ -1.16
CPNE3-208ENST00000614678 AMIGO3Q86WK7 504 aa7.78□□□□□ -1.16
CPNE3-208ENST00000614678 NSD2O96028 1365 aa7.77□□□□□ -1.17
CPNE3-208ENST00000614678 BTAF1O14981 1849 aa7.77□□□□□ -1.17
CPNE3-208ENST00000614678 RGPD1P0DJD0 1748 aa7.77□□□□□ -1.17
CPNE3-208ENST00000614678 BAG6P46379 1132 aa7.77□□□□□ -1.17
CPNE3-208ENST00000614678 ABCC6O95255 1503 aa7.77□□□□□ -1.17
CPNE3-208ENST00000614678 MPRIPQ6WCQ1 1025 aa7.77□□□□□ -1.17
CPNE3-208ENST00000614678 RAPGEF4Q8WZA2 1011 aa7.77□□□□□ -1.17
CPNE3-208ENST00000614678 IGSF1Q8N6C5 1336 aa7.76□□□□□ -1.17
CPNE3-208ENST00000614678 BCL11BQ9C0K0 894 aaPredicted RBP7.76□□□□□ -1.17
CPNE3-208ENST00000614678 NUP188Q5SRE5 1749 aa7.76□□□□□ -1.17
CPNE3-208ENST00000614678 TATP17735 454 aaPredicted RBP7.76□□□□□ -1.17
CPNE3-208ENST00000614678 PPP2R1AP30153 589 aa7.76□□□□□ -1.17
CPNE3-208ENST00000614678 TXNRD1Q16881 649 aa7.75□□□□□ -1.17
CPNE3-208ENST00000614678 ZNF827Q17R98 1081 aa7.75□□□□□ -1.17
CPNE3-208ENST00000614678 CCDC184Q52MB2 194 aa7.75□□□□□ -1.17
CPNE3-208ENST00000614678 SMG6Q86US8 1419 aaKnown RBP7.75□□□□□ -1.17
CPNE3-208ENST00000614678 U2SURPO15042 1029 aaKnown RBP7.75□□□□□ -1.17
CPNE3-208ENST00000614678 PHACTR3Q96KR7 559 aa7.75□□□□□ -1.17
CPNE3-208ENST00000614678 COL3A1P02461 1466 aaPredicted RBP7.75□□□□□ -1.17
CPNE3-208ENST00000614678 CCDC125Q86Z20 511 aa7.75□□□□□ -1.17
CPNE3-208ENST00000614678 LGR6Q9HBX8 967 aa7.75□□□□□ -1.17
CPNE3-208ENST00000614678 NCAPD2Q15021 1401 aa7.74□□□□□ -1.17
CPNE3-208ENST00000614678 PIGBQ92521 554 aa7.74□□□□□ -1.17
CPNE3-208ENST00000614678 ASAP1Q9ULH1 1129 aa7.74□□□□□ -1.17
CPNE3-208ENST00000614678 CDCA7Q9BWT1 371 aaPredicted RBP7.74□□□□□ -1.17
CPNE3-208ENST00000614678 ITGB4P16144 1822 aa7.74□□□□□ -1.17
CPNE3-208ENST00000614678 NHSQ6T4R5 1651 aa7.74□□□□□ -1.17
CPNE3-208ENST00000614678 PHKG2P15735 406 aa7.73□□□□□ -1.17
CPNE3-208ENST00000614678 RREB1Q92766 1687 aa7.73□□□□□ -1.17
CPNE3-208ENST00000614678 MTHFSDQ2M296 383 aaKnown RBP7.73□□□□□ -1.17
CPNE3-208ENST00000614678 SLC4A9Q96Q91 983 aa7.73□□□□□ -1.17
CPNE3-208ENST00000614678 KDM6AO15550 1401 aaPredicted RBP7.73□□□□□ -1.17
CPNE3-208ENST00000614678 PKD1L3Q7Z443 1732 aa7.73□□□□□ -1.17
CPNE3-208ENST00000614678 ZBTB7AO95365 584 aa7.73□□□□□ -1.17
CPNE3-208ENST00000614678 DIAPH1O60610 1272 aaKnown RBP7.72□□□□□ -1.17
CPNE3-208ENST00000614678 DCTN1Q14203 1278 aa7.72□□□□□ -1.17
CPNE3-208ENST00000614678 ZNF530Q6P9A1 599 aaPredicted RBP7.72□□□□□ -1.17
CPNE3-208ENST00000614678 KIF24Q5T7B8 1368 aa7.72□□□□□ -1.17
CPNE3-208ENST00000614678 PLSCR1O15162 318 aa7.72□□□□□ -1.17
CPNE3-208ENST00000614678 SLC39A6Q13433 755 aa7.71□□□□□ -1.17
CPNE3-208ENST00000614678 PCDH11XQ9BZA7 1347 aa7.71□□□□□ -1.17
CPNE3-208ENST00000614678 PCDH11YQ9BZA8 1340 aa7.71□□□□□ -1.17
CPNE3-208ENST00000614678 NFATC2IPQ8NCF5 419 aa7.71□□□□□ -1.18
CPNE3-208ENST00000614678 ATF5Q9Y2D1 282 aaPredicted RBP7.71□□□□□ -1.18
CPNE3-208ENST00000614678 BCL9O00512 1426 aa7.7□□□□□ -1.18
CPNE3-208ENST00000614678 ITPK1Q13572 414 aa7.7□□□□□ -1.18
CPNE3-208ENST00000614678 KDRP35968 1356 aa7.7□□□□□ -1.18
CPNE3-208ENST00000614678 PARD3Q8TEW0 1356 aa7.7□□□□□ -1.18
CPNE3-208ENST00000614678 PRKAR2BP31323 418 aa7.7□□□□□ -1.18
CPNE3-208ENST00000614678 THUMPD2Q9BTF0 503 aaKnown RBP7.7□□□□□ -1.18
CPNE3-208ENST00000614678 ATG3Q9NT62 314 aa7.7□□□□□ -1.18
CPNE3-208ENST00000614678 TUBGCP6Q96RT7 1819 aa7.7□□□□□ -1.18
CPNE3-208ENST00000614678 PTCD1O75127 700 aaKnown RBP7.7□□□□□ -1.18
CPNE3-208ENST00000614678 U2AF1L5P0DN76 240 aaPredicted RBP7.7□□□□□ -1.18
CPNE3-208ENST00000614678 U2AF1Q01081 240 aaKnown RBP eCLIP7.7□□□□□ -1.18
CPNE3-208ENST00000614678 KCNQ3O43525 872 aa7.69□□□□□ -1.18
CPNE3-208ENST00000614678 NPC1L1Q9UHC9 1359 aa7.69□□□□□ -1.18
CPNE3-208ENST00000614678 MSL1Q68DK7 614 aa7.69□□□□□ -1.18
CPNE3-208ENST00000614678 IFNL2Q8IZJ0 200 aa7.69□□□□□ -1.18
CPNE3-208ENST00000614678 RSPH6AQ9H0K4 717 aa7.69□□□□□ -1.18
CPNE3-208ENST00000614678 SPG7Q9UQ90 795 aa7.69□□□□□ -1.18
CPNE3-208ENST00000614678 PALLDQ8WX93 1383 aa7.69□□□□□ -1.18
CPNE3-208ENST00000614678 CCDC146Q8IYE0 955 aa7.69□□□□□ -1.18
CPNE3-208ENST00000614678 CCNL1Q9UK58 526 aaPredicted RBP7.69□□□□□ -1.18
CPNE3-208ENST00000614678 VIRMAQ69YN4 1812 aaKnown RBP7.68□□□□□ -1.18
CPNE3-208ENST00000614678 PHF14O94880 888 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 NKX1-1Q15270 411 aaPredicted RBP7.68□□□□□ -1.18
CPNE3-208ENST00000614678 SLC15A2Q16348 729 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 MCM10Q7L590 875 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 IL17REQ8NFR9 667 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 MIS18AQ9NYP9 233 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 PAPPAQ13219 1627 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 PRAMEF22A3QJZ6 481 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 LINC00116Q8NCU8 138 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 WWC3Q9ULE0 1092 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 LY75O60449 1722 aa7.68□□□□□ -1.18
CPNE3-208ENST00000614678 RRP7AQ9Y3A4 280 aaKnown RBP7.68□□□□□ -1.18
CPNE3-208ENST00000614678 PIP4K2AP48426 406 aaPredicted RBP7.67□□□□□ -1.18
CPNE3-208ENST00000614678 AKT1S1Q96B36 256 aa7.67□□□□□ -1.18
CPNE3-208ENST00000614678 RBM42Q9BTD8 480 aaKnown RBP7.67□□□□□ -1.18
CPNE3-208ENST00000614678 PNPLA7Q6ZV29 1317 aa7.67□□□□□ -1.18
CPNE3-208ENST00000614678 TMOD3Q9NYL9 352 aa7.67□□□□□ -1.18
CPNE3-208ENST00000614678 PLEKHO1Q53GL0 409 aaPredicted RBP7.67□□□□□ -1.18
CPNE3-208ENST00000614678 MYH14Q7Z406 1995 aaKnown RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms