RNA–Protein interactions for RNA: ENST00000613547.4

MDC1-209, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 5 BASIC

Gene MDC1, Length 830 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-209ENST00000613547 KDRP35968 1356 aa17.73■□□□□ 0.43
MDC1-209ENST00000613547 RGPD2P0DJD1 1756 aa17.73■□□□□ 0.43
MDC1-209ENST00000613547 PCDH11XQ9BZA7 1347 aa17.72■□□□□ 0.43
MDC1-209ENST00000613547 PCDH11YQ9BZA8 1340 aa17.72■□□□□ 0.43
MDC1-209ENST00000613547 HMOX1P09601 288 aa17.72■□□□□ 0.43
MDC1-209ENST00000613547 U2AF1L5P0DN76 240 aaPredicted RBP17.72■□□□□ 0.43
MDC1-209ENST00000613547 U2AF1Q01081 240 aaKnown RBP eCLIP17.72■□□□□ 0.43
MDC1-209ENST00000613547 AEBP1Q8IUX7 1158 aa17.72■□□□□ 0.43
MDC1-209ENST00000613547 DDX54Q8TDD1 881 aaKnown RBP17.72■□□□□ 0.43
MDC1-209ENST00000613547 AMOTQ4VCS5 1084 aa17.71■□□□□ 0.43
MDC1-209ENST00000613547 PLEKHO1Q53GL0 409 aaPredicted RBP17.71■□□□□ 0.43
MDC1-209ENST00000613547 FAM182BQ5T319 152 aa17.71■□□□□ 0.43
MDC1-209ENST00000613547 MARCH10Q8NA82 808 aaPredicted RBP17.71■□□□□ 0.43
MDC1-209ENST00000613547 RGPD1P0DJD0 1748 aa17.7■□□□□ 0.42
MDC1-209ENST00000613547 BRWD3Q6RI45 1802 aa17.7■□□□□ 0.42
MDC1-209ENST00000613547 SOCS7O14512 581 aa17.69■□□□□ 0.42
MDC1-209ENST00000613547 CCDC125Q86Z20 511 aa17.68■□□□□ 0.42
MDC1-209ENST00000613547 FCHSD2O94868 740 aa17.67■□□□□ 0.42
MDC1-209ENST00000613547 NEFMP07197 916 aa17.67■□□□□ 0.42
MDC1-209ENST00000613547 SF3B2Q13435 895 aaKnown RBP17.67■□□□□ 0.42
MDC1-209ENST00000613547 WDR43Q15061 677 aaKnown RBP eCLIP17.67■□□□□ 0.42
MDC1-209ENST00000613547 BCL9O00512 1426 aa17.66■□□□□ 0.42
MDC1-209ENST00000613547 PNNQ9H307 717 aaKnown RBP17.66■□□□□ 0.42
MDC1-209ENST00000613547 PRKAR2BP31323 418 aa17.65■□□□□ 0.42
MDC1-209ENST00000613547 C1orf141Q5JVX7 400 aa17.65■□□□□ 0.42
MDC1-209ENST00000613547 ZNF530Q6P9A1 599 aaPredicted RBP17.65■□□□□ 0.42
MDC1-209ENST00000613547 IFNL2Q8IZJ0 200 aa17.65■□□□□ 0.42
MDC1-209ENST00000613547 UPF1Q92900 1129 aaKnown RBP eCLIP17.65■□□□□ 0.42
MDC1-209ENST00000613547 CYP27B1O15528 508 aa17.64■□□□□ 0.41
MDC1-209ENST00000613547 RSPH6AQ9H0K4 717 aa17.64■□□□□ 0.41
MDC1-209ENST00000613547 PKD1L3Q7Z443 1732 aa17.64■□□□□ 0.41
MDC1-209ENST00000613547 TRIM37O94972 964 aa17.63■□□□□ 0.41
MDC1-209ENST00000613547 HSP90AB1P08238 724 aaKnown RBP17.63■□□□□ 0.41
MDC1-209ENST00000613547 PHKG2P15735 406 aa17.63■□□□□ 0.41
MDC1-209ENST00000613547 DIEXFQ68CQ4 756 aaKnown RBP17.63■□□□□ 0.41
MDC1-209ENST00000613547 GAS2L2Q8NHY3 880 aa17.62■□□□□ 0.41
MDC1-209ENST00000613547 MRS2Q9HD23 443 aa17.62■□□□□ 0.41
MDC1-209ENST00000613547 BCL11BQ9C0K0 894 aaPredicted RBP17.61■□□□□ 0.41
MDC1-209ENST00000613547 NKX1-1Q15270 411 aaPredicted RBP17.6■□□□□ 0.41
MDC1-209ENST00000613547 SYTL4Q96C24 671 aaPredicted RBP17.6■□□□□ 0.41
MDC1-209ENST00000613547 ACSBG1Q96GR2 724 aa17.6■□□□□ 0.41
MDC1-209ENST00000613547 MAPK8IP3Q9UPT6 1336 aa17.6■□□□□ 0.41
MDC1-209ENST00000613547 BAG6P46379 1132 aa17.59■□□□□ 0.41
MDC1-209ENST00000613547 MTHFSDQ2M296 383 aaKnown RBP17.59■□□□□ 0.41
MDC1-209ENST00000613547 AKAP4Q5JQC9 854 aa17.59■□□□□ 0.41
MDC1-209ENST00000613547 DCAF5Q96JK2 942 aa17.59■□□□□ 0.41
MDC1-209ENST00000613547 APBA3O96018 575 aa17.58■□□□□ 0.4
MDC1-209ENST00000613547 SHANK3Q9BYB0 1731 aa17.58■□□□□ 0.4
MDC1-209ENST00000613547 PRIM1P49642 420 aaKnown RBP17.57■□□□□ 0.4
MDC1-209ENST00000613547 PHACTR3Q96KR7 559 aa17.57■□□□□ 0.4
MDC1-209ENST00000613547 KCNQ2O43526 872 aa17.56■□□□□ 0.4
MDC1-209ENST00000613547 ADAMTS8Q9UP79 889 aa17.56■□□□□ 0.4
MDC1-209ENST00000613547 MAP3K5Q99683 1374 aa17.55■□□□□ 0.4
MDC1-209ENST00000613547 GNAT3A8MTJ3 354 aa17.55■□□□□ 0.4
MDC1-209ENST00000613547 CCDC184Q52MB2 194 aa17.55■□□□□ 0.4
MDC1-209ENST00000613547 ERVV-2B6SEH9 535 aa17.54■□□□□ 0.4
MDC1-209ENST00000613547 MPRIPQ6WCQ1 1025 aa17.54■□□□□ 0.4
MDC1-209ENST00000613547 RTF1Q92541 710 aaKnown RBP17.54■□□□□ 0.4
MDC1-209ENST00000613547 PLEKHF1Q96S99 279 aa17.54■□□□□ 0.4
MDC1-209ENST00000613547 TMOD3Q9NYL9 352 aa17.54■□□□□ 0.4
MDC1-209ENST00000613547 NHSQ6T4R5 1651 aa17.54■□□□□ 0.4
MDC1-209ENST00000613547 RUNDC1Q96C34 613 aa17.53■□□□□ 0.4
MDC1-209ENST00000613547 EP400Q96L91 3159 aa17.53■□□□□ 0.4
MDC1-209ENST00000613547 CCER2I3L3R5 266 aa17.52■□□□□ 0.4
MDC1-209ENST00000613547 CABP4P57796 275 aa17.52■□□□□ 0.4
MDC1-209ENST00000613547 PNISRQ8TF01 805 aaKnown RBP17.52■□□□□ 0.4
MDC1-209ENST00000613547 DOT1LQ8TEK3 1739 aa17.52■□□□□ 0.39
MDC1-209ENST00000613547 PLSCR1O15162 318 aa17.51■□□□□ 0.39
MDC1-209ENST00000613547 KDM6AO15550 1401 aaPredicted RBP17.51■□□□□ 0.39
MDC1-209ENST00000613547 HTATSF1O43719 755 aaKnown RBP17.51■□□□□ 0.39
MDC1-209ENST00000613547 NFE2L2Q16236 605 aa17.51■□□□□ 0.39
MDC1-209ENST00000613547 PTF1AQ7RTS3 328 aa17.51■□□□□ 0.39
MDC1-209ENST00000613547 DEFB132Q7Z7B7 95 aa17.51■□□□□ 0.39
MDC1-209ENST00000613547 RNMTO43148 476 aaKnown RBP17.5■□□□□ 0.39
MDC1-209ENST00000613547 EN1Q05925 392 aaPredicted RBP17.5■□□□□ 0.39
MDC1-209ENST00000613547 CCDC146Q8IYE0 955 aa17.5■□□□□ 0.39
MDC1-209ENST00000613547 TNS1Q9HBL0 1735 aaKnown RBP17.5■□□□□ 0.39
MDC1-209ENST00000613547 TEFQ10587 303 aa17.49■□□□□ 0.39
MDC1-209ENST00000613547 PIGBQ92521 554 aa17.49■□□□□ 0.39
MDC1-209ENST00000613547 SMARCC1Q92922 1105 aaPredicted RBP17.49■□□□□ 0.39
MDC1-209ENST00000613547 SBF2Q86WG5 1849 aa17.49■□□□□ 0.39
MDC1-209ENST00000613547 LMOD3Q0VAK6 560 aa17.48■□□□□ 0.39
MDC1-209ENST00000613547 CAMKK2Q96RR4 588 aa17.48■□□□□ 0.39
MDC1-209ENST00000613547 SLC52A2Q9HAB3 445 aa17.48■□□□□ 0.39
MDC1-209ENST00000613547 LGR6Q9HBX8 967 aa17.48■□□□□ 0.39
MDC1-209ENST00000613547 FAM9BQ8IZU0 186 aa17.47■□□□□ 0.39
MDC1-209ENST00000613547 TMPOP42166 694 aaKnown RBP17.46■□□□□ 0.39
MDC1-209ENST00000613547 RIPK4P57078 832 aa17.46■□□□□ 0.39
MDC1-209ENST00000613547 EZH2Q15910 746 aaKnown RBP17.46■□□□□ 0.39
MDC1-209ENST00000613547 NFATC2IPQ8NCF5 419 aa17.46■□□□□ 0.39
MDC1-209ENST00000613547 IL17REQ8NFR9 667 aa17.46■□□□□ 0.39
MDC1-209ENST00000613547 TOGARAM1Q9Y4F4 1720 aa17.46■□□□□ 0.39
MDC1-209ENST00000613547 PALLDQ8WX93 1383 aa17.45■□□□□ 0.38
MDC1-209ENST00000613547 MIER1Q8N108 512 aa17.45■□□□□ 0.38
MDC1-209ENST00000613547 MRC1P22897 1456 aa17.44■□□□□ 0.38
MDC1-209ENST00000613547 CEMIPQ8WUJ3 1361 aa17.44■□□□□ 0.38
MDC1-209ENST00000613547 HMGB2P26583 209 aaKnown RBP17.44■□□□□ 0.38
MDC1-209ENST00000613547 NEUROD2Q15784 382 aa17.44■□□□□ 0.38
MDC1-209ENST00000613547 TXNRD1Q16881 649 aa17.44■□□□□ 0.38
MDC1-209ENST00000613547 SLC27A3Q5K4L6 730 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms