RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 MAP3K5Q99683 1374 aa18.57■□□□□ 0.56
USP39-220ENST00000613444 PLCH1Q4KWH8 1693 aa18.56■□□□□ 0.56
USP39-220ENST00000613444 PKD1L3Q7Z443 1732 aa18.56■□□□□ 0.56
USP39-220ENST00000613444 GNAT3A8MTJ3 354 aa18.55■□□□□ 0.56
USP39-220ENST00000613444 CFAP44Q96MT7 982 aa18.55■□□□□ 0.56
USP39-220ENST00000613444 PLEKHG2Q9H7P9 1386 aa18.55■□□□□ 0.56
USP39-220ENST00000613444 FKBP8Q14318 412 aa18.55■□□□□ 0.56
USP39-220ENST00000613444 AMOTQ4VCS5 1084 aa18.55■□□□□ 0.56
USP39-220ENST00000613444 PLEKHO1Q53GL0 409 aaPredicted RBP18.55■□□□□ 0.56
USP39-220ENST00000613444 GNAI1P63096 354 aa18.54■□□□□ 0.56
USP39-220ENST00000613444 IL17REQ8NFR9 667 aa18.54■□□□□ 0.56
USP39-220ENST00000613444 BTG4Q9NY30 223 aa18.54■□□□□ 0.56
USP39-220ENST00000613444 ADAMTS7Q9UKP4 1686 aa18.54■□□□□ 0.56
USP39-220ENST00000613444 PARP4Q9UKK3 1724 aaKnown RBP18.53■□□□□ 0.56
USP39-220ENST00000613444 NEFLP07196 543 aa18.53■□□□□ 0.56
USP39-220ENST00000613444 RRP1P56182 461 aaKnown RBP18.53■□□□□ 0.56
USP39-220ENST00000613444 LARP1Q6PKG0 1096 aaKnown RBP18.53■□□□□ 0.56
USP39-220ENST00000613444 RTF1Q92541 710 aaKnown RBP18.53■□□□□ 0.56
USP39-220ENST00000613444 MBIPQ9NS73 344 aa18.53■□□□□ 0.56
USP39-220ENST00000613444 NRAPQ86VF7 1730 aa18.53■□□□□ 0.56
USP39-220ENST00000613444 EXOSC9Q06265 439 aaKnown RBP18.52■□□□□ 0.56
USP39-220ENST00000613444 RAPGEF4Q8WZA2 1011 aa18.52■□□□□ 0.56
USP39-220ENST00000613444 CARD10Q9BWT7 1032 aa18.52■□□□□ 0.56
USP39-220ENST00000613444 CEMIPQ8WUJ3 1361 aa18.52■□□□□ 0.56
USP39-220ENST00000613444 JCADQ9P266 1359 aa18.52■□□□□ 0.56
USP39-220ENST00000613444 IRX6P78412 446 aaPredicted RBP18.52■□□□□ 0.56
USP39-220ENST00000613444 TOM1L2Q6ZVM7 507 aa18.52■□□□□ 0.56
USP39-220ENST00000613444 LAS1LQ9Y4W2 734 aaKnown RBP18.52■□□□□ 0.56
USP39-220ENST00000613444 CHL1O00533 1208 aa18.51■□□□□ 0.55
USP39-220ENST00000613444 AKAP4Q5JQC9 854 aa18.51■□□□□ 0.55
USP39-220ENST00000613444 ZNF530Q6P9A1 599 aaPredicted RBP18.51■□□□□ 0.55
USP39-220ENST00000613444 STRN4Q9NRL3 753 aa18.51■□□□□ 0.55
USP39-220ENST00000613444 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.51■□□□□ 0.559e-7■□□□□ 10
USP39-220ENST00000613444 TATP17735 454 aaPredicted RBP18.51■□□□□ 0.55
USP39-220ENST00000613444 OVOS2A0A0G2JMS6 1433 aa18.5■□□□□ 0.55
USP39-220ENST00000613444 NWD2Q9ULI1 1742 aa18.5■□□□□ 0.55
USP39-220ENST00000613444 ADAMTS2O95450 1211 aa18.49■□□□□ 0.55
USP39-220ENST00000613444 CT47B1P0C2W7 299 aaPredicted RBP18.49■□□□□ 0.55
USP39-220ENST00000613444 EVA1CP58658 441 aa18.49■□□□□ 0.55
USP39-220ENST00000613444 SHANK3Q9BYB0 1731 aa18.49■□□□□ 0.55
USP39-220ENST00000613444 SCN11AQ9UI33 1791 aa18.49■□□□□ 0.55
USP39-220ENST00000613444 RARSP54136 660 aaKnown RBP18.49■□□□□ 0.55
USP39-220ENST00000613444 SIPA1L3O60292 1781 aaPredicted RBP18.49■□□□□ 0.55
USP39-220ENST00000613444 BCAR3O75815 825 aa18.48■□□□□ 0.55
USP39-220ENST00000613444 NUTM2BA6NNL0 878 aaPredicted RBP18.48■□□□□ 0.55
USP39-220ENST00000613444 NUTM2EB1AL46 878 aaPredicted RBP18.48■□□□□ 0.55
USP39-220ENST00000613444 NUTM2AQ8IVF1 878 aaPredicted RBP18.48■□□□□ 0.55
USP39-220ENST00000613444 LGR6Q9HBX8 967 aa18.48■□□□□ 0.55
USP39-220ENST00000613444 SLIT2O94813 1529 aa18.47■□□□□ 0.55
USP39-220ENST00000613444 WNK3Q9BYP7 1800 aa18.47■□□□□ 0.55
USP39-220ENST00000613444 PLIN1O60240 522 aa18.47■□□□□ 0.55
USP39-220ENST00000613444 C1orf141Q5JVX7 400 aa18.46■□□□□ 0.55
USP39-220ENST00000613444 SPG7Q9UQ90 795 aa18.46■□□□□ 0.55
USP39-220ENST00000613444 HSPA1LP34931 641 aa18.45■□□□□ 0.54
USP39-220ENST00000613444 TSPYL6Q8N831 410 aa18.45■□□□□ 0.54
USP39-220ENST00000613444 KDM3BQ7LBC6 1761 aa18.45■□□□□ 0.54
USP39-220ENST00000613444 MPRIPQ6WCQ1 1025 aa18.45■□□□□ 0.54
USP39-220ENST00000613444 MIS18AQ9NYP9 233 aa18.45■□□□□ 0.54
USP39-220ENST00000613444 LRP6O75581 1613 aa18.44■□□□□ 0.54
USP39-220ENST00000613444 CYP27B1O15528 508 aa18.44■□□□□ 0.54
USP39-220ENST00000613444 RNMTO43148 476 aaKnown RBP18.44■□□□□ 0.54
USP39-220ENST00000613444 VAMP4O75379 141 aa18.44■□□□□ 0.54
USP39-220ENST00000613444 PHKG2P15735 406 aa18.44■□□□□ 0.54
USP39-220ENST00000613444 C8orf58Q8NAV2 365 aa18.44■□□□□ 0.54
USP39-220ENST00000613444 DISP2A7MBM2 1401 aa18.44■□□□□ 0.54
USP39-220ENST00000613444 KDM6AO15550 1401 aaPredicted RBP18.44■□□□□ 0.54
USP39-220ENST00000613444 IL2RBP14784 551 aa18.44■□□□□ 0.54
USP39-220ENST00000613444 TAF7Q15545 349 aaPredicted RBP18.43■□□□□ 0.54
USP39-220ENST00000613444 BABAM1Q9NWV8 329 aa18.43■□□□□ 0.54
USP39-220ENST00000613444 SPATA31A6Q5VVP1 1343 aa18.43■□□□□ 0.54
USP39-220ENST00000613444 ERICH6BQ5W0A0 696 aa18.42■□□□□ 0.54
USP39-220ENST00000613444 IFNL2Q8IZJ0 200 aa18.42■□□□□ 0.54
USP39-220ENST00000613444 TSPYL4Q9UJ04 414 aa18.42■□□□□ 0.54
USP39-220ENST00000613444 KRT24Q2M2I5 525 aa18.41■□□□□ 0.54
USP39-220ENST00000613444 SSH1Q8WYL5 1049 aa18.41■□□□□ 0.54
USP39-220ENST00000613444 TWISTNBQ3B726 338 aaPredicted RBP18.41■□□□□ 0.54
USP39-220ENST00000613444 C20orf194Q5TEA3 1177 aa18.41■□□□□ 0.54
USP39-220ENST00000613444 ZNF428Q96B54 188 aa18.41■□□□□ 0.54
USP39-220ENST00000613444 BCL2L13Q9BXK5 485 aa18.41■□□□□ 0.54
USP39-220ENST00000613444 USP35Q9P2H5 1018 aa18.41■□□□□ 0.54
USP39-220ENST00000613444 ZCRB1Q8TBF4 217 aaKnown RBP18.4■□□□□ 0.54
USP39-220ENST00000613444 MRC1P22897 1456 aa18.4■□□□□ 0.54
USP39-220ENST00000613444 ELL2O00472 640 aaPredicted RBP18.39■□□□□ 0.53
USP39-220ENST00000613444 ALDH1L2Q3SY69 923 aa18.39■□□□□ 0.53
USP39-220ENST00000613444 BCL9LQ86UU0 1499 aa18.38■□□□□ 0.53
USP39-220ENST00000613444 SPATA31A1Q5TZJ5 1347 aa18.38■□□□□ 0.53
USP39-220ENST00000613444 PCDH11XQ9BZA7 1347 aa18.38■□□□□ 0.53
USP39-220ENST00000613444 PCDH11YQ9BZA8 1340 aa18.38■□□□□ 0.53
USP39-220ENST00000613444 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.38■□□□□ 0.53
USP39-220ENST00000613444 TEFQ10587 303 aa18.38■□□□□ 0.53
USP39-220ENST00000613444 BRPF1P55201 1214 aaPredicted RBP18.37■□□□□ 0.53
USP39-220ENST00000613444 DCAF5Q96JK2 942 aa18.37■□□□□ 0.53
USP39-220ENST00000613444 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.37■□□□□ 0.53
USP39-220ENST00000613444 FNBP4Q8N3X1 1017 aaPredicted RBP18.37■□□□□ 0.53
USP39-220ENST00000613444 SMC4Q9NTJ3 1288 aa18.37■□□□□ 0.53
USP39-220ENST00000613444 SPATA31A5Q5VU36 1347 aa18.36■□□□□ 0.53
USP39-220ENST00000613444 SPATA31A7Q8IWB4 1347 aa18.36■□□□□ 0.53
USP39-220ENST00000613444 NKX1-1Q15270 411 aaPredicted RBP18.36■□□□□ 0.53
USP39-220ENST00000613444 C8orf37Q96NL8 207 aa18.36■□□□□ 0.53
USP39-220ENST00000613444 HSP90AB1P08238 724 aaKnown RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms