RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 ASXL2Q76L83 1435 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 RAB11FIP3O75154 756 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 STK3Q13188 491 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 SART3Q15020 963 aaKnown RBP16.43■□□□□ 0.22
GGA3-220ENST00000613421 JAKMIP1Q96N16 626 aaKnown RBP16.43■□□□□ 0.22
GGA3-220ENST00000613421 MBIPQ9NS73 344 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 AMOTL2Q9Y2J4 779 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 DISP1Q96F81 1524 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 F6X3S4 739 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 ZNF396Q96N95 335 aaPredicted RBP16.43■□□□□ 0.22
GGA3-220ENST00000613421 TTC21BQ7Z4L5 1316 aa16.42■□□□□ 0.22
GGA3-220ENST00000613421 ZSCAN31Q96LW9 406 aaPredicted RBP16.42■□□□□ 0.22
GGA3-220ENST00000613421 EIF4G3O43432 1585 aaKnown RBP16.42■□□□□ 0.22
GGA3-220ENST00000613421 SAMD9Q5K651 1589 aa16.42■□□□□ 0.22
GGA3-220ENST00000613421 UHRF1BP1Q6BDS2 1440 aa16.42■□□□□ 0.22
GGA3-220ENST00000613421 CNNM1Q9NRU3 951 aa16.42■□□□□ 0.22
GGA3-220ENST00000613421 ZNF518AQ6AHZ1 1483 aa16.42■□□□□ 0.22
GGA3-220ENST00000613421 FYB1O15117 783 aa16.42■□□□□ 0.22
GGA3-220ENST00000613421 XBP1P17861 261 aa16.42■□□□□ 0.22
GGA3-220ENST00000613421 KRT85P78386 507 aa16.42■□□□□ 0.22
GGA3-220ENST00000613421 LARP1BQ659C4 914 aaKnown RBP16.42■□□□□ 0.22
GGA3-220ENST00000613421 A0A0U1RQG5 324 aaPredicted RBP16.41■□□□□ 0.22
GGA3-220ENST00000613421 OLFM4Q6UX06 510 aa16.41■□□□□ 0.22
GGA3-220ENST00000613421 ADGRL2O95490 1459 aa16.41■□□□□ 0.22
GGA3-220ENST00000613421 WDR7Q9Y4E6 1490 aa16.41■□□□□ 0.22
GGA3-220ENST00000613421 PIK3C2GO75747 1445 aa16.41■□□□□ 0.22
GGA3-220ENST00000613421 TEX14Q8IWB6 1497 aa16.41■□□□□ 0.22
GGA3-220ENST00000613421 FAM177BA6PVY3 158 aa16.41■□□□□ 0.22
GGA3-220ENST00000613421 RBM33Q96EV2 1170 aaKnown RBP16.41■□□□□ 0.22
GGA3-220ENST00000613421 IPO7O95373 1038 aaKnown RBP16.41■□□□□ 0.22
GGA3-220ENST00000613421 BMP2KLQ5H9B9 411 aa16.41■□□□□ 0.22
GGA3-220ENST00000613421 DDX54Q8TDD1 881 aaKnown RBP16.41■□□□□ 0.22
GGA3-220ENST00000613421 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.41■□□□□ 0.222e-7■■■■□ 24.6
GGA3-220ENST00000613421 BRMS1Q9HCU9 246 aa16.41■□□□□ 0.22
GGA3-220ENST00000613421 ABCA5Q8WWZ7 1642 aa16.4■□□□□ 0.22
GGA3-220ENST00000613421 USHBP1Q8N6Y0 703 aa16.4■□□□□ 0.22
GGA3-220ENST00000613421 COL17A1Q9UMD9 1497 aaPredicted RBP16.4■□□□□ 0.22
GGA3-220ENST00000613421 PBRM1Q86U86 1689 aa16.4■□□□□ 0.22
GGA3-220ENST00000613421 ZC3H6P61129 1189 aaKnown RBP16.4■□□□□ 0.22
GGA3-220ENST00000613421 PCMTD1Q96MG8 357 aaPredicted RBP16.4■□□□□ 0.22
GGA3-220ENST00000613421 RAD21O60216 631 aa16.4■□□□□ 0.22
GGA3-220ENST00000613421 GLRX3O76003 335 aaKnown RBP16.4■□□□□ 0.22
GGA3-220ENST00000613421 CEBPZQ03701 1054 aaKnown RBP16.4■□□□□ 0.22
GGA3-220ENST00000613421 PER1O15534 1290 aaPredicted RBP16.39■□□□□ 0.21
GGA3-220ENST00000613421 CCDC192P0DO97 292 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 HDAC1Q13547 482 aaPredicted RBP16.39■□□□□ 0.21
GGA3-220ENST00000613421 FAM83GA6ND36 823 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 STK38Q15208 465 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 TBC1D32Q96NH3 1257 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 TRIM34Q9BYJ4 488 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 PRDM11Q9NQV5 511 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 KDM4AO75164 1064 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 CCDC57Q2TAC2 916 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 PLEKHH1Q9ULM0 1364 aa16.39■□□□□ 0.21
GGA3-220ENST00000613421 PHF8Q9UPP1 1060 aa16.38■□□□□ 0.21
GGA3-220ENST00000613421 PCDHB15Q9Y5E8 787 aa16.38■□□□□ 0.21
GGA3-220ENST00000613421 AMOTQ4VCS5 1084 aa16.38■□□□□ 0.21
GGA3-220ENST00000613421 FLIIQ13045 1269 aa16.38■□□□□ 0.21
GGA3-220ENST00000613421 KRT32Q14532 448 aa16.38■□□□□ 0.21
GGA3-220ENST00000613421 LRRFIP2Q9Y608 721 aaKnown RBP16.38■□□□□ 0.21
GGA3-220ENST00000613421 CASTP20810 708 aaKnown RBP16.38■□□□□ 0.21
GGA3-220ENST00000613421 ARHGAP45Q92619 1136 aa16.38■□□□□ 0.21
GGA3-220ENST00000613421 TBC1D9Q6ZT07 1266 aa16.37■□□□□ 0.21
GGA3-220ENST00000613421 UPF3BQ9BZI7 483 aaKnown RBP16.37■□□□□ 0.21
GGA3-220ENST00000613421 TNMDQ9H2S6 317 aa16.37■□□□□ 0.21
GGA3-220ENST00000613421 ACEP12821 1306 aa16.37■□□□□ 0.21
GGA3-220ENST00000613421 FBLN1P23142 703 aa16.37■□□□□ 0.21
GGA3-220ENST00000613421 GPS2Q13227 327 aa16.36■□□□□ 0.21
GGA3-220ENST00000613421 DNAAF4Q8WXU2 420 aa16.36■□□□□ 0.21
GGA3-220ENST00000613421 PUS7Q96PZ0 661 aaKnown RBP16.36■□□□□ 0.21
GGA3-220ENST00000613421 CEP126Q9P2H0 1117 aa16.36■□□□□ 0.21
GGA3-220ENST00000613421 RRP12Q5JTH9 1297 aaKnown RBP16.36■□□□□ 0.21
GGA3-220ENST00000613421 CCDC70Q6NSX1 233 aa16.36■□□□□ 0.21
GGA3-220ENST00000613421 LARP1Q6PKG0 1096 aaKnown RBP16.36■□□□□ 0.21
GGA3-220ENST00000613421 FKBP4Q02790 459 aaKnown RBP eCLIP16.35■□□□□ 0.21
GGA3-220ENST00000613421 NUCB1Q02818 461 aa16.35■□□□□ 0.21
GGA3-220ENST00000613421 CARD14Q9BXL6 1004 aa16.35■□□□□ 0.21
GGA3-220ENST00000613421 ABCC10Q5T3U5 1492 aa16.35■□□□□ 0.21
GGA3-220ENST00000613421 PDIA4P13667 645 aaKnown RBP16.34■□□□□ 0.21
GGA3-220ENST00000613421 ATP2B1P20020 1258 aa16.34■□□□□ 0.21
GGA3-220ENST00000613421 ZSCAN25Q6NSZ9 544 aa16.34■□□□□ 0.21
GGA3-220ENST00000613421 SMC2O95347 1197 aa16.34■□□□□ 0.21
GGA3-220ENST00000613421 CEBPAP49715 358 aaPredicted RBP16.34■□□□□ 0.21
GGA3-220ENST00000613421 JMYQ8N9B5 988 aa16.34■□□□□ 0.21
GGA3-220ENST00000613421 TNPO1Q92973 898 aaKnown RBP16.34■□□□□ 0.21
GGA3-220ENST00000613421 SPATA32Q96LK8 384 aa16.34■□□□□ 0.21
GGA3-220ENST00000613421 CEP89Q96ST8 783 aa16.34■□□□□ 0.21
GGA3-220ENST00000613421 MNS1Q8NEH6 495 aa16.34■□□□□ 0.21
GGA3-220ENST00000613421 GCC2Q8IWJ2 1684 aa16.34■□□□□ 0.21
GGA3-220ENST00000613421 ME1P48163 572 aa16.33■□□□□ 0.21
GGA3-220ENST00000613421 MPRIPQ6WCQ1 1025 aa16.33■□□□□ 0.21
GGA3-220ENST00000613421 SPC24Q8NBT2 197 aa16.33■□□□□ 0.21
GGA3-220ENST00000613421 PRPF40BQ6NWY9 871 aaKnown RBP16.33■□□□□ 0.21
GGA3-220ENST00000613421 FMNL2Q96PY5 1086 aa16.33■□□□□ 0.21
GGA3-220ENST00000613421 CTNNA3Q9UI47 895 aa16.33■□□□□ 0.2
GGA3-220ENST00000613421 ESPNB1AK53 854 aa16.33■□□□□ 0.2
GGA3-220ENST00000613421 SSFA2P28290 1259 aa16.33■□□□□ 0.2
GGA3-220ENST00000613421 DBF4Q9UBU7 674 aaPredicted RBP16.33■□□□□ 0.2
GGA3-220ENST00000613421 MAST1Q9Y2H9 1570 aa16.33■□□□□ 0.2
GGA3-220ENST00000613421 TTC22Q5TAA0 569 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms