RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 PKD1L3Q7Z443 1732 aa15.88■□□□□ 0.13
LINC00539-204ENST00000608957 NCAPD2Q15021 1401 aa15.87■□□□□ 0.13
LINC00539-204ENST00000608957 PLSCR1O15162 318 aa15.87■□□□□ 0.13
LINC00539-204ENST00000608957 POLKQ9UBT6 870 aa15.86■□□□□ 0.13
LINC00539-204ENST00000608957 SMG6Q86US8 1419 aaKnown RBP15.85■□□□□ 0.13
LINC00539-204ENST00000608957 CASZ1Q86V15 1759 aa15.85■□□□□ 0.13
LINC00539-204ENST00000608957 SRCAPQ6ZRS2 3230 aa15.85■□□□□ 0.13
LINC00539-204ENST00000608957 TOGARAM1Q9Y4F4 1720 aa15.85■□□□□ 0.13
LINC00539-204ENST00000608957 PAPPAQ13219 1627 aa15.84■□□□□ 0.13
LINC00539-204ENST00000608957 DDX54Q8TDD1 881 aaKnown RBP15.84■□□□□ 0.13
LINC00539-204ENST00000608957 ANO8Q9HCE9 1232 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-204ENST00000608957 WASHC2AQ641Q2 1341 aa15.84■□□□□ 0.13
LINC00539-204ENST00000608957 ITGB4P16144 1822 aa15.84■□□□□ 0.13
LINC00539-204ENST00000608957 LY75O60449 1722 aa15.83■□□□□ 0.13
LINC00539-204ENST00000608957 PPM1GO15355 546 aaPredicted RBP15.83■□□□□ 0.12
LINC00539-204ENST00000608957 TNNT2P45379 298 aaPredicted RBP15.83■□□□□ 0.12
LINC00539-204ENST00000608957 ZCRB1Q8TBF4 217 aaKnown RBP15.82■□□□□ 0.12
LINC00539-204ENST00000608957 NSD2O96028 1365 aa15.82■□□□□ 0.12
LINC00539-204ENST00000608957 TUBGCP6Q96RT7 1819 aa15.82■□□□□ 0.12
LINC00539-204ENST00000608957 TXNRD1Q16881 649 aa15.8■□□□□ 0.12
LINC00539-204ENST00000608957 AMER1Q5JTC6 1135 aaPredicted RBP15.8■□□□□ 0.12
LINC00539-204ENST00000608957 EYA1Q99502 592 aa15.8■□□□□ 0.12
LINC00539-204ENST00000608957 TATP17735 454 aaPredicted RBP15.79■□□□□ 0.12
LINC00539-204ENST00000608957 EIF4A2Q14240 407 aaKnown RBP15.79■□□□□ 0.12
LINC00539-204ENST00000608957 RAPGEF4Q8WZA2 1011 aa15.79■□□□□ 0.12
LINC00539-204ENST00000608957 PER1O15534 1290 aaPredicted RBP15.78■□□□□ 0.12
LINC00539-204ENST00000608957 NBPF14Q5TI25 921 aa15.78■□□□□ 0.12
LINC00539-204ENST00000608957 DIEXFQ68CQ4 756 aaKnown RBP15.78■□□□□ 0.12
LINC00539-204ENST00000608957 PRIM1P49642 420 aaKnown RBP15.77■□□□□ 0.12
LINC00539-204ENST00000608957 PDGFDQ9GZP0 370 aaPredicted RBP15.77■□□□□ 0.12
LINC00539-204ENST00000608957 KNSTRNQ9Y448 316 aa15.77■□□□□ 0.12
LINC00539-204ENST00000608957 QSER1Q2KHR3 1735 aa15.77■□□□□ 0.11
LINC00539-204ENST00000608957 CYP27B1O15528 508 aa15.76■□□□□ 0.11
LINC00539-204ENST00000608957 MORC1Q86VD1 984 aa15.76■□□□□ 0.11
LINC00539-204ENST00000608957 LRRC4BQ9NT99 713 aa15.76■□□□□ 0.11
LINC00539-204ENST00000608957 TAF1LQ8IZX4 1826 aa15.75■□□□□ 0.11
LINC00539-204ENST00000608957 IGSF1Q8N6C5 1336 aa15.74■□□□□ 0.11
LINC00539-204ENST00000608957 PCDH11XQ9BZA7 1347 aa15.74■□□□□ 0.11
LINC00539-204ENST00000608957 PCDH11YQ9BZA8 1340 aa15.74■□□□□ 0.11
LINC00539-204ENST00000608957 SYTL4Q96C24 671 aaPredicted RBP15.73■□□□□ 0.11
LINC00539-204ENST00000608957 VIRMAQ69YN4 1812 aaKnown RBP15.73■□□□□ 0.11
LINC00539-204ENST00000608957 KCNQ4P56696 695 aa15.72■□□□□ 0.11
LINC00539-204ENST00000608957 SLC15A2Q16348 729 aa15.72■□□□□ 0.11
LINC00539-204ENST00000608957 ZNF827Q17R98 1081 aa15.72■□□□□ 0.11
LINC00539-204ENST00000608957 C5P01031 1676 aa15.71■□□□□ 0.11
LINC00539-204ENST00000608957 STK32BQ9NY57 414 aa15.7■□□□□ 0.1
LINC00539-204ENST00000608957 COL24A1Q17RW2 1714 aa15.69■□□□□ 0.1
LINC00539-204ENST00000608957 NKX1-1Q15270 411 aaPredicted RBP15.69■□□□□ 0.1
LINC00539-204ENST00000608957 CC2D1BQ5T0F9 858 aaKnown RBP15.69■□□□□ 0.1
LINC00539-204ENST00000608957 AEBP1Q8IUX7 1158 aa15.69■□□□□ 0.1
LINC00539-204ENST00000608957 NPC1L1Q9UHC9 1359 aa15.68■□□□□ 0.1
LINC00539-204ENST00000608957 IL13P35225 146 aa15.68■□□□□ 0.1
LINC00539-204ENST00000608957 AKT1S1Q96B36 256 aa15.68■□□□□ 0.1
LINC00539-204ENST00000608957 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.68■□□□□ 0.1
LINC00539-204ENST00000608957 PHKG2P15735 406 aa15.67■□□□□ 0.1
LINC00539-204ENST00000608957 DDX10Q13206 875 aaKnown RBP15.67■□□□□ 0.1
LINC00539-204ENST00000608957 SLC27A3Q5K4L6 730 aa15.67■□□□□ 0.1
LINC00539-204ENST00000608957 SPG7Q9UQ90 795 aa15.67■□□□□ 0.1
LINC00539-204ENST00000608957 COL3A1P02461 1466 aaPredicted RBP15.66■□□□□ 0.1
LINC00539-204ENST00000608957 PLEKHG2Q9H7P9 1386 aa15.66■□□□□ 0.1
LINC00539-204ENST00000608957 ZBTB7AO95365 584 aa15.66■□□□□ 0.1
LINC00539-204ENST00000608957 MTHFSP49914 203 aa15.66■□□□□ 0.1
LINC00539-204ENST00000608957 SPON1Q9HCB6 807 aa15.66■□□□□ 0.1
LINC00539-204ENST00000608957 SCN11AQ9UI33 1791 aa15.66■□□□□ 0.1
LINC00539-204ENST00000608957 KDRP35968 1356 aa15.65■□□□□ 0.1
LINC00539-204ENST00000608957 MPRIPQ6WCQ1 1025 aa15.65■□□□□ 0.1
LINC00539-204ENST00000608957 PIGBQ92521 554 aa15.65■□□□□ 0.1
LINC00539-204ENST00000608957 UBR3Q6ZT12 1888 aa15.65■□□□□ 0.1
LINC00539-204ENST00000608957 PALLDQ8WX93 1383 aa15.64■□□□□ 0.09
LINC00539-204ENST00000608957 KDM6AO15550 1401 aaPredicted RBP15.64■□□□□ 0.09
LINC00539-204ENST00000608957 PTGER2P43116 358 aa15.64■□□□□ 0.09
LINC00539-204ENST00000608957 CNGB1Q14028 1251 aaPredicted RBP15.64■□□□□ 0.09
LINC00539-204ENST00000608957 IFNL2Q8IZJ0 200 aa15.64■□□□□ 0.09
LINC00539-204ENST00000608957 CCNL1Q9UK58 526 aaPredicted RBP15.64■□□□□ 0.09
LINC00539-204ENST00000608957 C4BP0C0L5 1744 aa15.63■□□□□ 0.09
LINC00539-204ENST00000608957 SULT6B1Q6IMI4 303 aa15.63■□□□□ 0.09
LINC00539-204ENST00000608957 SGIP1Q9BQI5 828 aa15.63■□□□□ 0.09
LINC00539-204ENST00000608957 ATF5Q9Y2D1 282 aaPredicted RBP15.63■□□□□ 0.09
LINC00539-204ENST00000608957 PNPLA7Q6ZV29 1317 aa15.63■□□□□ 0.09
LINC00539-204ENST00000608957 PLEKHO1Q53GL0 409 aaPredicted RBP15.6■□□□□ 0.09
LINC00539-204ENST00000608957 ZNF530Q6P9A1 599 aaPredicted RBP15.6■□□□□ 0.09
LINC00539-204ENST00000608957 ASAP1Q9ULH1 1129 aa15.6■□□□□ 0.09
LINC00539-204ENST00000608957 COL5A3P25940 1745 aaPredicted RBP15.6■□□□□ 0.09
LINC00539-204ENST00000608957 MTFR1LQ9H019 292 aa15.59■□□□□ 0.09
LINC00539-204ENST00000608957 ZNF831Q5JPB2 1677 aa15.59■□□□□ 0.09
LINC00539-204ENST00000608957 ADAMTS7Q9UKP4 1686 aa15.59■□□□□ 0.09
LINC00539-204ENST00000608957 HMOX1P09601 288 aa15.58■□□□□ 0.08
LINC00539-204ENST00000608957 TMOD3Q9NYL9 352 aa15.58■□□□□ 0.08
LINC00539-204ENST00000608957 MYH14Q7Z406 1995 aaKnown RBP15.58■□□□□ 0.08
LINC00539-204ENST00000608957 AMOTQ4VCS5 1084 aa15.57■□□□□ 0.08
LINC00539-204ENST00000608957 AMIGO3Q86WK7 504 aa15.57■□□□□ 0.08
LINC00539-204ENST00000608957 SMARCC1Q92922 1105 aaPredicted RBP15.57■□□□□ 0.08
LINC00539-204ENST00000608957 ATG3Q9NT62 314 aa15.57■□□□□ 0.08
LINC00539-204ENST00000608957 TFCP2L1Q9NZI6 479 aa15.57■□□□□ 0.08
LINC00539-204ENST00000608957 PPP1R1BQ9UD71 204 aaPredicted RBP15.57■□□□□ 0.08
LINC00539-204ENST00000608957 DIAPH1O60610 1272 aaKnown RBP15.56■□□□□ 0.08
LINC00539-204ENST00000608957 DCAF5Q96JK2 942 aa15.56■□□□□ 0.08
LINC00539-204ENST00000608957 TJP1Q07157 1748 aa15.55■□□□□ 0.08
LINC00539-204ENST00000608957 LOC102724428A0A0B4J2F2 783 aa15.55■□□□□ 0.08
LINC00539-204ENST00000608957 ERVV-2B6SEH9 535 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms