RNA–Protein interactions for RNA: ENST00000607187.1

CTSA-215, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 509 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-215ENST00000607187 ANKRD24Q8TF21 1146 aa13.77□□□□□ -0.21
CTSA-215ENST00000607187 PANK3Q9H999 370 aa13.77□□□□□ -0.21
CTSA-215ENST00000607187 PEAK1Q9H792 1746 aa13.76□□□□□ -0.21
CTSA-215ENST00000607187 RTL1A6NKG5 1358 aa13.76□□□□□ -0.21
CTSA-215ENST00000607187 AMPHP49418 695 aa13.76□□□□□ -0.21
CTSA-215ENST00000607187 RRS1Q15050 365 aaKnown RBP13.76□□□□□ -0.21
CTSA-215ENST00000607187 DDB1Q16531 1140 aa13.76□□□□□ -0.21
CTSA-215ENST00000607187 NLRP2Q9NX02 1062 aa13.76□□□□□ -0.21
CTSA-215ENST00000607187 KIF7Q2M1P5 1343 aa13.75□□□□□ -0.21
CTSA-215ENST00000607187 DEFB132Q7Z7B7 95 aa13.75□□□□□ -0.21
CTSA-215ENST00000607187 RNF39Q9H2S5 420 aa13.75□□□□□ -0.21
CTSA-215ENST00000607187 KIF24Q5T7B8 1368 aa13.74□□□□□ -0.21
CTSA-215ENST00000607187 TRIM37O94972 964 aa13.73□□□□□ -0.21
CTSA-215ENST00000607187 LTV1Q96GA3 475 aaPredicted RBP13.73□□□□□ -0.21
CTSA-215ENST00000607187 OVOS2A0A0G2JMS6 1433 aa13.73□□□□□ -0.21
CTSA-215ENST00000607187 KAT6BQ8WYB5 2073 aa13.72□□□□□ -0.21
CTSA-215ENST00000607187 IL2RBP14784 551 aa13.72□□□□□ -0.21
CTSA-215ENST00000607187 BAG6P46379 1132 aa13.72□□□□□ -0.21
CTSA-215ENST00000607187 MIER1Q8N108 512 aa13.72□□□□□ -0.21
CTSA-215ENST00000607187 TNS2Q63HR2 1409 aa13.72□□□□□ -0.21
CTSA-215ENST00000607187 FLT4P35916 1363 aa13.71□□□□□ -0.21
CTSA-215ENST00000607187 EXOC5O00471 708 aa13.71□□□□□ -0.21
CTSA-215ENST00000607187 HSP90AB2PQ58FF8 381 aa13.71□□□□□ -0.21
CTSA-215ENST00000607187 MARCH10Q8NA82 808 aaPredicted RBP13.71□□□□□ -0.21
CTSA-215ENST00000607187 BCL9O00512 1426 aa13.71□□□□□ -0.22
CTSA-215ENST00000607187 NSD2O96028 1365 aa13.71□□□□□ -0.22
CTSA-215ENST00000607187 INSRP06213 1382 aa13.71□□□□□ -0.22
CTSA-215ENST00000607187 EMILIN1Q9Y6C2 1016 aa13.7□□□□□ -0.22
CTSA-215ENST00000607187 EN1Q05925 392 aaPredicted RBP13.69□□□□□ -0.22
CTSA-215ENST00000607187 SMG6Q86US8 1419 aaKnown RBP13.69□□□□□ -0.22
CTSA-215ENST00000607187 NBPF6Q5VWK0 638 aa13.68□□□□□ -0.22
CTSA-215ENST00000607187 NBPF4Q96M43 638 aa13.68□□□□□ -0.22
CTSA-215ENST00000607187 POLKQ9UBT6 870 aa13.68□□□□□ -0.22
CTSA-215ENST00000607187 CIZ1Q9ULV3 898 aaPredicted RBP13.68□□□□□ -0.22
CTSA-215ENST00000607187 KNSTRNQ9Y448 316 aa13.68□□□□□ -0.22
CTSA-215ENST00000607187 SHANK3Q9BYB0 1731 aa13.67□□□□□ -0.22
CTSA-215ENST00000607187 PPM1GO15355 546 aaPredicted RBP13.67□□□□□ -0.22
CTSA-215ENST00000607187 APBA3O96018 575 aa13.67□□□□□ -0.22
CTSA-215ENST00000607187 CAMKK2Q96RR4 588 aa13.67□□□□□ -0.22
CTSA-215ENST00000607187 WASHC2AQ641Q2 1341 aa13.66□□□□□ -0.22
CTSA-215ENST00000607187 RREB1Q92766 1687 aa13.66□□□□□ -0.22
CTSA-215ENST00000607187 RGPD3A6NKT7 1758 aaPredicted RBP13.66□□□□□ -0.22
CTSA-215ENST00000607187 RGPD4Q7Z3J3 1758 aa13.66□□□□□ -0.22
CTSA-215ENST00000607187 TNNT2P45379 298 aaPredicted RBP13.66□□□□□ -0.22
CTSA-215ENST00000607187 SSUH2Q9Y2M2 353 aa13.66□□□□□ -0.22
CTSA-215ENST00000607187 PARD3Q8TEW0 1356 aa13.66□□□□□ -0.22
CTSA-215ENST00000607187 MEGF6O75095 1541 aa13.65□□□□□ -0.22
CTSA-215ENST00000607187 PER1O15534 1290 aaPredicted RBP13.65□□□□□ -0.22
CTSA-215ENST00000607187 EZH2Q15910 746 aaKnown RBP13.65□□□□□ -0.22
CTSA-215ENST00000607187 BCL11BQ9C0K0 894 aaPredicted RBP13.65□□□□□ -0.22
CTSA-215ENST00000607187 NHSQ6T4R5 1651 aa13.65□□□□□ -0.22
CTSA-215ENST00000607187 NBR1Q14596 966 aa13.64□□□□□ -0.23
CTSA-215ENST00000607187 PTF1AQ7RTS3 328 aa13.64□□□□□ -0.23
CTSA-215ENST00000607187 USHBP1Q8N6Y0 703 aa13.64□□□□□ -0.23
CTSA-215ENST00000607187 NCAPD2Q15021 1401 aa13.64□□□□□ -0.23
CTSA-215ENST00000607187 SPDYE2BA6NHP3 402 aa13.63□□□□□ -0.23
CTSA-215ENST00000607187 SPDYE6P0CI01 402 aa13.63□□□□□ -0.23
CTSA-215ENST00000607187 SPDYE2Q495Y8 402 aa13.63□□□□□ -0.23
CTSA-215ENST00000607187 MORC1Q86VD1 984 aa13.63□□□□□ -0.23
CTSA-215ENST00000607187 NUP188Q5SRE5 1749 aa13.63□□□□□ -0.23
CTSA-215ENST00000607187 PLSCR1O15162 318 aa13.62□□□□□ -0.23
CTSA-215ENST00000607187 C1QBPQ07021 282 aaKnown RBP13.62□□□□□ -0.23
CTSA-215ENST00000607187 ZCRB1Q8TBF4 217 aaKnown RBP13.62□□□□□ -0.23
CTSA-215ENST00000607187 KCNQ2O43526 872 aa13.61□□□□□ -0.23
CTSA-215ENST00000607187 DDX54Q8TDD1 881 aaKnown RBP13.61□□□□□ -0.23
CTSA-215ENST00000607187 RAPGEF4Q8WZA2 1011 aa13.61□□□□□ -0.23
CTSA-215ENST00000607187 BTAF1O14981 1849 aa13.61□□□□□ -0.23
CTSA-215ENST00000607187 PKD1L3Q7Z443 1732 aa13.61□□□□□ -0.23
CTSA-215ENST00000607187 EIF4A2Q14240 407 aaKnown RBP13.6□□□□□ -0.23
CTSA-215ENST00000607187 EYA1Q99502 592 aa13.6□□□□□ -0.23
CTSA-215ENST00000607187 NPC1L1Q9UHC9 1359 aa13.59□□□□□ -0.23
CTSA-215ENST00000607187 DOT1LQ8TEK3 1739 aa13.59□□□□□ -0.23
CTSA-215ENST00000607187 TATP17735 454 aaPredicted RBP13.59□□□□□ -0.23
CTSA-215ENST00000607187 ACSBG1Q96GR2 724 aa13.59□□□□□ -0.23
CTSA-215ENST00000607187 CC2D1BQ5T0F9 858 aaKnown RBP13.57□□□□□ -0.24
CTSA-215ENST00000607187 PCDH11XQ9BZA7 1347 aa13.57□□□□□ -0.24
CTSA-215ENST00000607187 PCDH11YQ9BZA8 1340 aa13.57□□□□□ -0.24
CTSA-215ENST00000607187 PSDA5PKW4 1024 aaPredicted RBP13.56□□□□□ -0.24
CTSA-215ENST00000607187 HS6ST3Q8IZP7 471 aa13.56□□□□□ -0.24
CTSA-215ENST00000607187 IGSF1Q8N6C5 1336 aa13.56□□□□□ -0.24
CTSA-215ENST00000607187 MTHFSP49914 203 aa13.55□□□□□ -0.24
CTSA-215ENST00000607187 R3HDM1Q15032 1099 aaKnown RBP13.55□□□□□ -0.24
CTSA-215ENST00000607187 ZBTB47Q9UFB7 747 aaPredicted RBP13.55□□□□□ -0.24
CTSA-215ENST00000607187 PLEKHG2Q9H7P9 1386 aa13.55□□□□□ -0.24
CTSA-215ENST00000607187 ITGB4P16144 1822 aa13.55□□□□□ -0.24
CTSA-215ENST00000607187 CYP27B1O15528 508 aa13.54□□□□□ -0.24
CTSA-215ENST00000607187 PRIM1P49642 420 aaKnown RBP13.54□□□□□ -0.24
CTSA-215ENST00000607187 TXNRD1Q16881 649 aa13.54□□□□□ -0.24
CTSA-215ENST00000607187 NBPF14Q5TI25 921 aa13.54□□□□□ -0.24
CTSA-215ENST00000607187 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.54□□□□□ -0.24
CTSA-215ENST00000607187 LY75O60449 1722 aa13.53□□□□□ -0.24
CTSA-215ENST00000607187 TOGARAM1Q9Y4F4 1720 aa13.53□□□□□ -0.24
CTSA-215ENST00000607187 IL13P35225 146 aa13.53□□□□□ -0.24
CTSA-215ENST00000607187 SPG7Q9UQ90 795 aa13.53□□□□□ -0.24
CTSA-215ENST00000607187 SYTL4Q96C24 671 aaPredicted RBP13.52□□□□□ -0.25
CTSA-215ENST00000607187 LRP5O75197 1615 aa13.51□□□□□ -0.25
CTSA-215ENST00000607187 NKX1-1Q15270 411 aaPredicted RBP13.51□□□□□ -0.25
CTSA-215ENST00000607187 PAPPAQ13219 1627 aa13.5□□□□□ -0.25
CTSA-215ENST00000607187 KDRP35968 1356 aa13.5□□□□□ -0.25
CTSA-215ENST00000607187 CNGB1Q14028 1251 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms