RNA–Protein interactions for RNA: ENST00000606213.5

PTPRN-219, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-219ENST00000606213 MEGF6O75095 1541 aa32■■■□□ 2.71
PTPRN-219ENST00000606213 KCNQ2O43526 872 aa32■■■□□ 2.71
PTPRN-219ENST00000606213 SYTL4Q96C24 671 aaPredicted RBP31.95■■■□□ 2.71
PTPRN-219ENST00000606213 KAT6BQ8WYB5 2073 aa31.93■■■□□ 2.7
PTPRN-219ENST00000606213 RREB1Q92766 1687 aa31.93■■■□□ 2.7
PTPRN-219ENST00000606213 AMER1Q5JTC6 1135 aaPredicted RBP31.93■■■□□ 2.7
PTPRN-219ENST00000606213 NHSQ6T4R5 1651 aa31.92■■■□□ 2.7
PTPRN-219ENST00000606213 EIF4A2Q14240 407 aaKnown RBP31.92■■■□□ 2.7
PTPRN-219ENST00000606213 EYA1Q99502 592 aa31.92■■■□□ 2.7
PTPRN-219ENST00000606213 PCDH11XQ9BZA7 1347 aa31.92■■■□□ 2.7
PTPRN-219ENST00000606213 PCDH11YQ9BZA8 1340 aa31.92■■■□□ 2.7
PTPRN-219ENST00000606213 RGPD3A6NKT7 1758 aaPredicted RBP31.91■■■□□ 2.7
PTPRN-219ENST00000606213 RGPD4Q7Z3J3 1758 aa31.91■■■□□ 2.7
PTPRN-219ENST00000606213 NUP188Q5SRE5 1749 aa31.89■■■□□ 2.7
PTPRN-219ENST00000606213 TXNRD1Q16881 649 aa31.89■■■□□ 2.7
PTPRN-219ENST00000606213 CC2D1BQ5T0F9 858 aaKnown RBP31.89■■■□□ 2.7
PTPRN-219ENST00000606213 PER1O15534 1290 aaPredicted RBP31.87■■■□□ 2.69
PTPRN-219ENST00000606213 PRIM1P49642 420 aaKnown RBP31.87■■■□□ 2.69
PTPRN-219ENST00000606213 CNGB1Q14028 1251 aaPredicted RBP31.87■■■□□ 2.69
PTPRN-219ENST00000606213 SPG7Q9UQ90 795 aa31.87■■■□□ 2.69
PTPRN-219ENST00000606213 PROM2Q8N271 834 aa31.85■■■□□ 2.69
PTPRN-219ENST00000606213 NCAPD2Q15021 1401 aa31.83■■■□□ 2.69
PTPRN-219ENST00000606213 STK32BQ9NY57 414 aa31.81■■■□□ 2.68
PTPRN-219ENST00000606213 BTAF1O14981 1849 aa31.81■■■□□ 2.68
PTPRN-219ENST00000606213 SHANK3Q9BYB0 1731 aa31.8■■■□□ 2.68
PTPRN-219ENST00000606213 CYP27B1O15528 508 aa31.79■■■□□ 2.68
PTPRN-219ENST00000606213 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.79■■■□□ 2.68
PTPRN-219ENST00000606213 IGSF1Q8N6C5 1336 aa31.78■■■□□ 2.68
PTPRN-219ENST00000606213 DOT1LQ8TEK3 1739 aa31.78■■■□□ 2.68
PTPRN-219ENST00000606213 MTHFSP49914 203 aa31.77■■■□□ 2.68
PTPRN-219ENST00000606213 ANO8Q9HCE9 1232 aaPredicted RBP31.77■■■□□ 2.68
PTPRN-219ENST00000606213 NPC1L1Q9UHC9 1359 aa31.75■■■□□ 2.67
PTPRN-219ENST00000606213 SLC27A3Q5K4L6 730 aa31.73■■■□□ 2.67
PTPRN-219ENST00000606213 MPRIPQ6WCQ1 1025 aa31.73■■■□□ 2.67
PTPRN-219ENST00000606213 IFNL2Q8IZJ0 200 aa31.73■■■□□ 2.67
PTPRN-219ENST00000606213 PKD1L3Q7Z443 1732 aa31.72■■■□□ 2.67
PTPRN-219ENST00000606213 SLC15A2Q16348 729 aa31.72■■■□□ 2.67
PTPRN-219ENST00000606213 PLEKHO1Q53GL0 409 aaPredicted RBP31.71■■■□□ 2.67
PTPRN-219ENST00000606213 LRP5O75197 1615 aa31.71■■■□□ 2.67
PTPRN-219ENST00000606213 PLEKHG2Q9H7P9 1386 aa31.69■■■□□ 2.66
PTPRN-219ENST00000606213 IL13P35225 146 aa31.69■■■□□ 2.66
PTPRN-219ENST00000606213 SULT6B1Q6IMI4 303 aa31.69■■■□□ 2.66
PTPRN-219ENST00000606213 PHKG2P15735 406 aa31.68■■■□□ 2.66
PTPRN-219ENST00000606213 NKX1-1Q15270 411 aaPredicted RBP31.68■■■□□ 2.66
PTPRN-219ENST00000606213 AMOTQ4VCS5 1084 aa31.67■■■□□ 2.66
PTPRN-219ENST00000606213 AEBP1Q8IUX7 1158 aa31.67■■■□□ 2.66
PTPRN-219ENST00000606213 SPON1Q9HCB6 807 aa31.67■■■□□ 2.66
PTPRN-219ENST00000606213 LRRC4BQ9NT99 713 aa31.67■■■□□ 2.66
PTPRN-219ENST00000606213 DIAPH1O60610 1272 aaKnown RBP31.66■■■□□ 2.66
PTPRN-219ENST00000606213 CCNL1Q9UK58 526 aaPredicted RBP31.66■■■□□ 2.66
PTPRN-219ENST00000606213 HSP90AB1P08238 724 aaKnown RBP31.64■■■□□ 2.66
PTPRN-219ENST00000606213 ZNF530Q6P9A1 599 aaPredicted RBP31.64■■■□□ 2.66
PTPRN-219ENST00000606213 TMOD3Q9NYL9 352 aa31.64■■■□□ 2.66
PTPRN-219ENST00000606213 KCNQ4P56696 695 aa31.63■■■□□ 2.65
PTPRN-219ENST00000606213 SMARCC1Q92922 1105 aaPredicted RBP31.63■■■□□ 2.65
PTPRN-219ENST00000606213 C1orf141Q5JVX7 400 aa31.62■■■□□ 2.65
PTPRN-219ENST00000606213 PPP1R1BQ9UD71 204 aaPredicted RBP31.62■■■□□ 2.65
PTPRN-219ENST00000606213 HMGB2P26583 209 aaKnown RBP31.61■■■□□ 2.65
PTPRN-219ENST00000606213 PALLDQ8WX93 1383 aa31.6■■■□□ 2.65
PTPRN-219ENST00000606213 PIGBQ92521 554 aa31.6■■■□□ 2.65
PTPRN-219ENST00000606213 CFAP53Q96M91 514 aa31.59■■■□□ 2.65
PTPRN-219ENST00000606213 KDRP35968 1356 aa31.58■■■□□ 2.65
PTPRN-219ENST00000606213 ZBTB7AO95365 584 aa31.58■■■□□ 2.65
PTPRN-219ENST00000606213 HMOX1P09601 288 aa31.58■■■□□ 2.65
PTPRN-219ENST00000606213 ZNF827Q17R98 1081 aa31.58■■■□□ 2.65
PTPRN-219ENST00000606213 DCAF5Q96JK2 942 aa31.58■■■□□ 2.65
PTPRN-219ENST00000606213 PDGFDQ9GZP0 370 aaPredicted RBP31.58■■■□□ 2.65
PTPRN-219ENST00000606213 TFCP2L1Q9NZI6 479 aa31.58■■■□□ 2.65
PTPRN-219ENST00000606213 U2SURPO15042 1029 aaKnown RBP31.57■■■□□ 2.64
PTPRN-219ENST00000606213 TOGARAM1Q9Y4F4 1720 aa31.56■■■□□ 2.64
PTPRN-219ENST00000606213 PAPPAQ13219 1627 aa31.55■■■□□ 2.64
PTPRN-219ENST00000606213 LY75O60449 1722 aa31.55■■■□□ 2.64
PTPRN-219ENST00000606213 AKT1S1Q96B36 256 aa31.54■■■□□ 2.64
PTPRN-219ENST00000606213 ERVV-2B6SEH9 535 aa31.53■■■□□ 2.64
PTPRN-219ENST00000606213 ATF5Q9Y2D1 282 aaPredicted RBP31.53■■■□□ 2.64
PTPRN-219ENST00000606213 ITGB4P16144 1822 aa31.53■■■□□ 2.64
PTPRN-219ENST00000606213 CASZ1Q86V15 1759 aa31.51■■■□□ 2.64
PTPRN-219ENST00000606213 CABP4P57796 275 aa31.51■■■□□ 2.63
PTPRN-219ENST00000606213 MTFR1LQ9H019 292 aa31.51■■■□□ 2.63
PTPRN-219ENST00000606213 PPP2R1AP30153 589 aa31.49■■■□□ 2.63
PTPRN-219ENST00000606213 ASAP1Q9ULH1 1129 aa31.48■■■□□ 2.63
PTPRN-219ENST00000606213 NUDCQ9Y266 331 aa31.48■■■□□ 2.63
PTPRN-219ENST00000606213 MSH5O43196 834 aa31.47■■■□□ 2.63
PTPRN-219ENST00000606213 AKAP4Q5JQC9 854 aa31.46■■■□□ 2.63
PTPRN-219ENST00000606213 LOC102724428A0A0B4J2F2 783 aa31.45■■■□□ 2.63
PTPRN-219ENST00000606213 SIK1P57059 783 aa31.45■■■□□ 2.63
PTPRN-219ENST00000606213 COL3A1P02461 1466 aaPredicted RBP31.45■■■□□ 2.62
PTPRN-219ENST00000606213 PNPLA7Q6ZV29 1317 aa31.44■■■□□ 2.62
PTPRN-219ENST00000606213 KDM6AO15550 1401 aaPredicted RBP31.43■■■□□ 2.62
PTPRN-219ENST00000606213 ZEB1P37275 1124 aaPredicted RBP31.43■■■□□ 2.62
PTPRN-219ENST00000606213 SLC16A10Q8TF71 515 aa31.43■■■□□ 2.62
PTPRN-219ENST00000606213 AK7Q96M32 723 aa31.43■■■□□ 2.62
PTPRN-219ENST00000606213 ATG3Q9NT62 314 aa31.43■■■□□ 2.62
PTPRN-219ENST00000606213 ATP6V1AP38606 617 aa31.42■■■□□ 2.62
PTPRN-219ENST00000606213 RBM42Q9BTD8 480 aaKnown RBP31.41■■■□□ 2.62
PTPRN-219ENST00000606213 PTGER2P43116 358 aa31.4■■■□□ 2.62
PTPRN-219ENST00000606213 MTHFSDQ2M296 383 aaKnown RBP31.4■■■□□ 2.62
PTPRN-219ENST00000606213 NFATC2IPQ8NCF5 419 aa31.4■■■□□ 2.62
PTPRN-219ENST00000606213 C5P01031 1676 aa31.4■■■□□ 2.62
PTPRN-219ENST00000606213 DDX10Q13206 875 aaKnown RBP31.39■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms