RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 RGPD5Q99666 1765 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 KIF3CO14782 793 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 HTRA3P83110 453 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 ZNF827Q17R98 1081 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 MSL1Q68DK7 614 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 COG3Q96JB2 828 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 SLC12A5Q9H2X9 1139 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 GPBP1L1Q9HC44 474 aaPredicted RBP7.29□□□□□ -1.24
VRK3-226ENST00000602029 TONSLQ96HA7 1378 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 BTAF1O14981 1849 aa7.29□□□□□ -1.24
VRK3-226ENST00000602029 PRIM1P49642 420 aaKnown RBP7.28□□□□□ -1.24
VRK3-226ENST00000602029 CCNL1Q9UK58 526 aaPredicted RBP7.28□□□□□ -1.24
VRK3-226ENST00000602029 NFAT5O94916 1531 aa7.27□□□□□ -1.25
VRK3-226ENST00000602029 SLC27A3Q5K4L6 730 aa7.27□□□□□ -1.25
VRK3-226ENST00000602029 ZCRB1Q8TBF4 217 aaKnown RBP7.27□□□□□ -1.25
VRK3-226ENST00000602029 RAPGEF4Q8WZA2 1011 aa7.27□□□□□ -1.25
VRK3-226ENST00000602029 WWC3Q9ULE0 1092 aa7.27□□□□□ -1.25
VRK3-226ENST00000602029 NHSQ6T4R5 1651 aa7.27□□□□□ -1.25
VRK3-226ENST00000602029 ABCC6O95255 1503 aa7.27□□□□□ -1.25
VRK3-226ENST00000602029 BCL9O00512 1426 aa7.27□□□□□ -1.25
VRK3-226ENST00000602029 EDC4Q6P2E9 1401 aaKnown RBP7.27□□□□□ -1.25
VRK3-226ENST00000602029 SMG6Q86US8 1419 aaKnown RBP7.27□□□□□ -1.25
VRK3-226ENST00000602029 USP47Q96K76 1375 aa7.26□□□□□ -1.25
VRK3-226ENST00000602029 USHBP1Q8N6Y0 703 aa7.26□□□□□ -1.25
VRK3-226ENST00000602029 SLC16A10Q8TF71 515 aa7.26□□□□□ -1.25
VRK3-226ENST00000602029 LRRC4BQ9NT99 713 aa7.26□□□□□ -1.25
VRK3-226ENST00000602029 A0A1W2PP64 1363 aa7.25□□□□□ -1.25
VRK3-226ENST00000602029 SBNO2Q9Y2G9 1366 aa7.25□□□□□ -1.25
VRK3-226ENST00000602029 PPM1GO15355 546 aaPredicted RBP7.25□□□□□ -1.25
VRK3-226ENST00000602029 GRIN3BO60391 1043 aa7.25□□□□□ -1.25
VRK3-226ENST00000602029 PHF14O94880 888 aa7.25□□□□□ -1.25
VRK3-226ENST00000602029 TATP17735 454 aaPredicted RBP7.25□□□□□ -1.25
VRK3-226ENST00000602029 APLP1P51693 650 aa7.25□□□□□ -1.25
VRK3-226ENST00000602029 IP6K1Q92551 441 aa7.25□□□□□ -1.25
VRK3-226ENST00000602029 COL18A1P39060 1754 aa7.25□□□□□ -1.25
VRK3-226ENST00000602029 PNPLA7Q6ZV29 1317 aa7.25□□□□□ -1.25
VRK3-226ENST00000602029 USP31Q70CQ4 1352 aa7.24□□□□□ -1.25
VRK3-226ENST00000602029 FBLN1P23142 703 aa7.24□□□□□ -1.25
VRK3-226ENST00000602029 RRS1Q15050 365 aaKnown RBP7.24□□□□□ -1.25
VRK3-226ENST00000602029 AK7Q96M32 723 aa7.24□□□□□ -1.25
VRK3-226ENST00000602029 POLR3GLQ9BT43 218 aa7.24□□□□□ -1.25
VRK3-226ENST00000602029 MAP3K19Q56UN5 1328 aa7.24□□□□□ -1.25
VRK3-226ENST00000602029 ANKRD36BQ8N2N9 1353 aa7.23□□□□□ -1.25
VRK3-226ENST00000602029 HOXC9P31274 260 aa7.23□□□□□ -1.25
VRK3-226ENST00000602029 MPRIPQ6WCQ1 1025 aa7.23□□□□□ -1.25
VRK3-226ENST00000602029 JMYQ8N9B5 988 aa7.23□□□□□ -1.25
VRK3-226ENST00000602029 AKT1S1Q96B36 256 aa7.23□□□□□ -1.25
VRK3-226ENST00000602029 KLRG1Q96E93 195 aa7.23□□□□□ -1.25
VRK3-226ENST00000602029 GGNBP2Q9H3C7 697 aa7.23□□□□□ -1.25
VRK3-226ENST00000602029 PCDH10Q9P2E7 1040 aa7.23□□□□□ -1.25
VRK3-226ENST00000602029 ST20-MTHFSA0A0A6YYL1 179 aa7.22□□□□□ -1.25
VRK3-226ENST00000602029 HMGB2P26583 209 aaKnown RBP7.22□□□□□ -1.25
VRK3-226ENST00000602029 COL23A1Q86Y22 540 aaPredicted RBP7.22□□□□□ -1.25
VRK3-226ENST00000602029 LTN1O94822 1766 aa7.22□□□□□ -1.25
VRK3-226ENST00000602029 PCDH11XQ9BZA7 1347 aa7.22□□□□□ -1.25
VRK3-226ENST00000602029 PCDH11YQ9BZA8 1340 aa7.22□□□□□ -1.25
VRK3-226ENST00000602029 MON2Q7Z3U7 1717 aa7.21□□□□□ -1.25
VRK3-226ENST00000602029 TMF1P82094 1093 aa7.21□□□□□ -1.26
VRK3-226ENST00000602029 PALLDQ8WX93 1383 aa7.2□□□□□ -1.26
VRK3-226ENST00000602029 CD163L1Q9NR16 1453 aa7.2□□□□□ -1.26
VRK3-226ENST00000602029 SLC24A1O60721 1099 aa7.2□□□□□ -1.26
VRK3-226ENST00000602029 NBPF6Q5VWK0 638 aa7.2□□□□□ -1.26
VRK3-226ENST00000602029 FLAD1Q8NFF5 587 aa7.2□□□□□ -1.26
VRK3-226ENST00000602029 NBPF4Q96M43 638 aa7.2□□□□□ -1.26
VRK3-226ENST00000602029 MEGF6O75095 1541 aa7.2□□□□□ -1.26
VRK3-226ENST00000602029 LY75O60449 1722 aa7.19□□□□□ -1.26
VRK3-226ENST00000602029 DOT1LQ8TEK3 1739 aa7.19□□□□□ -1.26
VRK3-226ENST00000602029 CDCA8Q53HL2 280 aa7.19□□□□□ -1.26
VRK3-226ENST00000602029 SMARCC1Q92922 1105 aaPredicted RBP7.19□□□□□ -1.26
VRK3-226ENST00000602029 TMOD3Q9NYL9 352 aa7.19□□□□□ -1.26
VRK3-226ENST00000602029 CGNL1Q0VF96 1302 aa7.19□□□□□ -1.26
VRK3-226ENST00000602029 RTL1A6NKG5 1358 aa7.19□□□□□ -1.26
VRK3-226ENST00000602029 GNPATO15228 680 aa7.18□□□□□ -1.26
VRK3-226ENST00000602029 TNNT2P45379 298 aaPredicted RBP7.18□□□□□ -1.26
VRK3-226ENST00000602029 HSP90AB2PQ58FF8 381 aa7.18□□□□□ -1.26
VRK3-226ENST00000602029 SMIM5Q71RC9 77 aa7.18□□□□□ -1.26
VRK3-226ENST00000602029 SPG7Q9UQ90 795 aa7.18□□□□□ -1.26
VRK3-226ENST00000602029 CICQ96RK0 1608 aaPredicted RBP7.18□□□□□ -1.26
VRK3-226ENST00000602029 FAM208AQ9UK61 1670 aaKnown RBP7.18□□□□□ -1.26
VRK3-226ENST00000602029 KIAA1551Q9HCM1 1747 aa7.18□□□□□ -1.26
VRK3-226ENST00000602029 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.17□□□□□ -1.26
VRK3-226ENST00000602029 TOMM70O94826 608 aa7.17□□□□□ -1.26
VRK3-226ENST00000602029 HSPA1AP0DMV8 641 aaKnown RBP7.17□□□□□ -1.26
VRK3-226ENST00000602029 HSPA1BP0DMV9 641 aaKnown RBP7.17□□□□□ -1.26
VRK3-226ENST00000602029 PUS7Q96PZ0 661 aaKnown RBP7.17□□□□□ -1.26
VRK3-226ENST00000602029 NMRK2Q9NPI5 230 aa7.17□□□□□ -1.26
VRK3-226ENST00000602029 CD2APQ9Y5K6 639 aa7.17□□□□□ -1.26
VRK3-226ENST00000602029 IGSF1Q8N6C5 1336 aa7.17□□□□□ -1.26
VRK3-226ENST00000602029 N4BP2Q86UW6 1770 aaPredicted RBP7.17□□□□□ -1.26
VRK3-226ENST00000602029 NSD2O96028 1365 aa7.17□□□□□ -1.26
VRK3-226ENST00000602029 FLT4P35916 1363 aa7.17□□□□□ -1.26
VRK3-226ENST00000602029 NSD3Q9BZ95 1437 aa7.17□□□□□ -1.26
VRK3-226ENST00000602029 PKD1L3Q7Z443 1732 aa7.16□□□□□ -1.26
VRK3-226ENST00000602029 FYB1O15117 783 aa7.16□□□□□ -1.26
VRK3-226ENST00000602029 ATP6V1AP38606 617 aa7.16□□□□□ -1.26
VRK3-226ENST00000602029 C16orf71Q8IYS4 520 aaPredicted RBP7.16□□□□□ -1.26
VRK3-226ENST00000602029 RBM42Q9BTD8 480 aaKnown RBP7.16□□□□□ -1.26
VRK3-226ENST00000602029 BCS1LQ9Y276 419 aa7.16□□□□□ -1.26
VRK3-226ENST00000602029 EMILIN1Q9Y6C2 1016 aa7.16□□□□□ -1.26
VRK3-226ENST00000602029 TAF1LQ8IZX4 1826 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms