RNA–Protein interactions for RNA: ENST00000601614.6

SSBP4-211, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 628 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-211ENST00000601614 EDC4Q6P2E9 1401 aaKnown RBP22.92■■□□□ 1.26
SSBP4-211ENST00000601614 IP6K1Q92551 441 aa22.92■■□□□ 1.26
SSBP4-211ENST00000601614 LTV1Q96GA3 475 aaPredicted RBP22.92■■□□□ 1.26
SSBP4-211ENST00000601614 SLC12A5Q9H2X9 1139 aa22.92■■□□□ 1.26
SSBP4-211ENST00000601614 COL23A1Q86Y22 540 aaPredicted RBP22.91■■□□□ 1.26
SSBP4-211ENST00000601614 ATP10DQ9P241 1426 aa22.91■■□□□ 1.26
SSBP4-211ENST00000601614 A0A1W2PP64 1363 aa22.9■■□□□ 1.26
SSBP4-211ENST00000601614 TMC1Q8TDI8 760 aa22.9■■□□□ 1.26
SSBP4-211ENST00000601614 C5P01031 1676 aa22.9■■□□□ 1.26
SSBP4-211ENST00000601614 MEGF6O75095 1541 aa22.89■■□□□ 1.26
SSBP4-211ENST00000601614 TAF1LQ8IZX4 1826 aa22.89■■□□□ 1.25
SSBP4-211ENST00000601614 GRIN3BO60391 1043 aa22.88■■□□□ 1.25
SSBP4-211ENST00000601614 MSL1Q68DK7 614 aa22.88■■□□□ 1.25
SSBP4-211ENST00000601614 CCNL1Q9UK58 526 aaPredicted RBP22.88■■□□□ 1.25
SSBP4-211ENST00000601614 HDGFL2Q7Z4V5 671 aaPredicted RBP22.87■■□□□ 1.25
SSBP4-211ENST00000601614 FBLN1P23142 703 aa22.86■■□□□ 1.25
SSBP4-211ENST00000601614 MSH5O43196 834 aa22.85■■□□□ 1.25
SSBP4-211ENST00000601614 NEUROD1Q13562 356 aa22.84■■□□□ 1.25
SSBP4-211ENST00000601614 ZCRB1Q8TBF4 217 aaKnown RBP22.84■■□□□ 1.25
SSBP4-211ENST00000601614 MAP3K19Q56UN5 1328 aa22.83■■□□□ 1.25
SSBP4-211ENST00000601614 HOXC9P31274 260 aa22.83■■□□□ 1.25
SSBP4-211ENST00000601614 ADCY9O60503 1353 aa22.83■■□□□ 1.25
SSBP4-211ENST00000601614 TOGARAM1Q9Y4F4 1720 aa22.82■■□□□ 1.24
SSBP4-211ENST00000601614 USP47Q96K76 1375 aa22.81■■□□□ 1.24
SSBP4-211ENST00000601614 TERF2IPQ9NYB0 399 aa22.8■■□□□ 1.24
SSBP4-211ENST00000601614 GPBP1L1Q9HC44 474 aaPredicted RBP22.79■■□□□ 1.24
SSBP4-211ENST00000601614 CARD11Q9BXL7 1154 aa22.78■■□□□ 1.24
SSBP4-211ENST00000601614 CD2APQ9Y5K6 639 aa22.78■■□□□ 1.24
SSBP4-211ENST00000601614 ITGB4P16144 1822 aa22.78■■□□□ 1.24
SSBP4-211ENST00000601614 UBR3Q6ZT12 1888 aa22.77■■□□□ 1.24
SSBP4-211ENST00000601614 ZNF526Q8TF50 670 aaPredicted RBP22.77■■□□□ 1.24
SSBP4-211ENST00000601614 C4BP0C0L5 1744 aa22.77■■□□□ 1.23
SSBP4-211ENST00000601614 HSPA6P17066 643 aa22.76■■□□□ 1.23
SSBP4-211ENST00000601614 AMPHP49418 695 aa22.76■■□□□ 1.23
SSBP4-211ENST00000601614 NBPF6Q5VWK0 638 aa22.76■■□□□ 1.23
SSBP4-211ENST00000601614 AMIGO3Q86WK7 504 aa22.76■■□□□ 1.23
SSBP4-211ENST00000601614 USHBP1Q8N6Y0 703 aa22.76■■□□□ 1.23
SSBP4-211ENST00000601614 NBPF4Q96M43 638 aa22.76■■□□□ 1.23
SSBP4-211ENST00000601614 COG3Q96JB2 828 aa22.74■■□□□ 1.23
SSBP4-211ENST00000601614 WWC3Q9ULE0 1092 aa22.74■■□□□ 1.23
SSBP4-211ENST00000601614 SMIM5Q71RC9 77 aa22.73■■□□□ 1.23
SSBP4-211ENST00000601614 PALLDQ8WX93 1383 aa22.73■■□□□ 1.23
SSBP4-211ENST00000601614 RRS1Q15050 365 aaKnown RBP22.72■■□□□ 1.23
SSBP4-211ENST00000601614 PUS7Q96PZ0 661 aaKnown RBP22.71■■□□□ 1.23
SSBP4-211ENST00000601614 RTL1A6NKG5 1358 aa22.71■■□□□ 1.23
SSBP4-211ENST00000601614 MAP2P11137 1827 aaKnown RBP22.71■■□□□ 1.23
SSBP4-211ENST00000601614 IGSF1Q8N6C5 1336 aa22.7■■□□□ 1.22
SSBP4-211ENST00000601614 CGNL1Q0VF96 1302 aa22.68■■□□□ 1.22
SSBP4-211ENST00000601614 FLAD1Q8NFF5 587 aa22.68■■□□□ 1.22
SSBP4-211ENST00000601614 TESK2Q96S53 571 aa22.68■■□□□ 1.22
SSBP4-211ENST00000601614 KIF3CO14782 793 aa22.67■■□□□ 1.22
SSBP4-211ENST00000601614 MPRIPQ6WCQ1 1025 aa22.67■■□□□ 1.22
SSBP4-211ENST00000601614 RAPGEF4Q8WZA2 1011 aa22.67■■□□□ 1.22
SSBP4-211ENST00000601614 PKD1L3Q7Z443 1732 aa22.67■■□□□ 1.22
SSBP4-211ENST00000601614 CICQ96RK0 1608 aaPredicted RBP22.66■■□□□ 1.22
SSBP4-211ENST00000601614 KIAA1551Q9HCM1 1747 aa22.65■■□□□ 1.22
SSBP4-211ENST00000601614 PCDH11XQ9BZA7 1347 aa22.65■■□□□ 1.22
SSBP4-211ENST00000601614 PCDH11YQ9BZA8 1340 aa22.65■■□□□ 1.22
SSBP4-211ENST00000601614 CYP27B1O15528 508 aa22.65■■□□□ 1.22
SSBP4-211ENST00000601614 TATP17735 454 aaPredicted RBP22.65■■□□□ 1.22
SSBP4-211ENST00000601614 PHF14O94880 888 aa22.64■■□□□ 1.21
SSBP4-211ENST00000601614 AK7Q96M32 723 aa22.63■■□□□ 1.21
SSBP4-211ENST00000601614 GGNBP2Q9H3C7 697 aa22.63■■□□□ 1.21
SSBP4-211ENST00000601614 KIF20BQ96Q89 1820 aa22.63■■□□□ 1.21
SSBP4-211ENST00000601614 N4BP2Q86UW6 1770 aaPredicted RBP22.63■■□□□ 1.21
SSBP4-211ENST00000601614 KIF13BQ9NQT8 1826 aa22.62■■□□□ 1.21
SSBP4-211ENST00000601614 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.62■■□□□ 1.21
SSBP4-211ENST00000601614 FYB1O15117 783 aa22.62■■□□□ 1.21
SSBP4-211ENST00000601614 HSP90AB2PQ58FF8 381 aa22.62■■□□□ 1.21
SSBP4-211ENST00000601614 SMG6Q86US8 1419 aaKnown RBP22.62■■□□□ 1.21
SSBP4-211ENST00000601614 INSRP06213 1382 aa22.6■■□□□ 1.21
SSBP4-211ENST00000601614 ST20-MTHFSA0A0A6YYL1 179 aa22.59■■□□□ 1.21
SSBP4-211ENST00000601614 LINC00116Q8NCU8 138 aa22.59■■□□□ 1.21
SSBP4-211ENST00000601614 PIGBQ92521 554 aa22.59■■□□□ 1.21
SSBP4-211ENST00000601614 SMARCC1Q92922 1105 aaPredicted RBP22.58■■□□□ 1.21
SSBP4-211ENST00000601614 PXDNLA1KZ92 1463 aa22.57■■□□□ 1.2
SSBP4-211ENST00000601614 FLT4P35916 1363 aa22.56■■□□□ 1.2
SSBP4-211ENST00000601614 HMGB2P26583 209 aaKnown RBP22.56■■□□□ 1.2
SSBP4-211ENST00000601614 SSFA2P28290 1259 aa22.56■■□□□ 1.2
SSBP4-211ENST00000601614 NSD3Q9BZ95 1437 aa22.56■■□□□ 1.2
SSBP4-211ENST00000601614 DNAJC5GQ8N7S2 189 aa22.55■■□□□ 1.2
SSBP4-211ENST00000601614 BRCA1P38398 1863 aaKnown RBP22.55■■□□□ 1.2
SSBP4-211ENST00000601614 NCAPD2Q15021 1401 aa22.55■■□□□ 1.2
SSBP4-211ENST00000601614 LOC102724428A0A0B4J2F2 783 aa22.54■■□□□ 1.2
SSBP4-211ENST00000601614 SIK1P57059 783 aa22.54■■□□□ 1.2
SSBP4-211ENST00000601614 ITPK1Q13572 414 aa22.54■■□□□ 1.2
SSBP4-211ENST00000601614 NKX1-1Q15270 411 aaPredicted RBP22.53■■□□□ 1.2
SSBP4-211ENST00000601614 WDR90Q96KV7 1748 aa22.53■■□□□ 1.2
SSBP4-211ENST00000601614 ANKRD26Q9UPS8 1709 aa22.52■■□□□ 1.2
SSBP4-211ENST00000601614 APLP1P51693 650 aa22.52■■□□□ 1.2
SSBP4-211ENST00000601614 GNPATO15228 680 aa22.51■■□□□ 1.19
SSBP4-211ENST00000601614 MMP10P09238 476 aa22.51■■□□□ 1.19
SSBP4-211ENST00000601614 ASAP1Q9ULH1 1129 aa22.51■■□□□ 1.19
SSBP4-211ENST00000601614 EMILIN1Q9Y6C2 1016 aa22.51■■□□□ 1.19
SSBP4-211ENST00000601614 KIF24Q5T7B8 1368 aa22.5■■□□□ 1.19
SSBP4-211ENST00000601614 TONSLQ96HA7 1378 aa22.5■■□□□ 1.19
SSBP4-211ENST00000601614 TOMM70O94826 608 aa22.49■■□□□ 1.19
SSBP4-211ENST00000601614 NMRK2Q9NPI5 230 aa22.49■■□□□ 1.19
SSBP4-211ENST00000601614 C10orf71Q711Q0 1435 aa22.48■■□□□ 1.19
SSBP4-211ENST00000601614 ATP6V1AP38606 617 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms