RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 RGPD5Q99666 1765 aa15.13■□□□□ 0.01
VRK3-223ENST00000601341 RAPGEF4Q8WZA2 1011 aa15.13■□□□□ 0.01
VRK3-223ENST00000601341 COL5A2P05997 1499 aaPredicted RBP15.13■□□□□ 0.01
VRK3-223ENST00000601341 HTATSF1O43719 755 aaKnown RBP15.12■□□□□ 0.01
VRK3-223ENST00000601341 PLEKHO1Q53GL0 409 aaPredicted RBP15.12■□□□□ 0.01
VRK3-223ENST00000601341 TOM1L2Q6ZVM7 507 aa15.12■□□□□ 0.01
VRK3-223ENST00000601341 BTG4Q9NY30 223 aa15.12■□□□□ 0.01
VRK3-223ENST00000601341 NUTM2BA6NNL0 878 aaPredicted RBP15.11■□□□□ 0.01
VRK3-223ENST00000601341 NUTM2EB1AL46 878 aaPredicted RBP15.11■□□□□ 0.01
VRK3-223ENST00000601341 ADAMTS2O95450 1211 aa15.11■□□□□ 0.01
VRK3-223ENST00000601341 NUTM2AQ8IVF1 878 aaPredicted RBP15.11■□□□□ 0.01
VRK3-223ENST00000601341 RTF1Q92541 710 aaKnown RBP15.11■□□□□ 0.01
VRK3-223ENST00000601341 FAM208AQ9UK61 1670 aaKnown RBP15.11■□□□□ 0.01
VRK3-223ENST00000601341 STRN4Q9NRL3 753 aa15.11■□□□□ 0.01
VRK3-223ENST00000601341 PLEKHG2Q9H7P9 1386 aa15.1■□□□□ 0.01
VRK3-223ENST00000601341 GNAT3A8MTJ3 354 aa15.1■□□□□ 0.01
VRK3-223ENST00000601341 TATP17735 454 aaPredicted RBP15.1■□□□□ 0.01
VRK3-223ENST00000601341 CARD10Q9BWT7 1032 aa15.1■□□□□ 0.01
VRK3-223ENST00000601341 RGPD2P0DJD1 1756 aa15.09■□□□□ 0.01
VRK3-223ENST00000601341 COL14A1Q05707 1796 aaKnown RBP15.09■□□□□ 0.01
VRK3-223ENST00000601341 TCERG1O14776 1098 aaKnown RBP15.08■□□□□ 0.01
VRK3-223ENST00000601341 HSPA1LP34931 641 aa15.08■□□□□ 0.01
VRK3-223ENST00000601341 GNAI1P63096 354 aa15.08■□□□□ 0.01
VRK3-223ENST00000601341 LARP1Q6PKG0 1096 aaKnown RBP15.08■□□□□ 0.01
VRK3-223ENST00000601341 THUMPD2Q9BTF0 503 aaKnown RBP15.08■□□□□ 0.01
VRK3-223ENST00000601341 IFT57Q9NWB7 429 aa15.08■□□□□ 0.01
VRK3-223ENST00000601341 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.08■□□□□ 0.011e-7■■□□□ 12.1
VRK3-223ENST00000601341 SPATA31A6Q5VVP1 1343 aa15.08■□□□□ 0
VRK3-223ENST00000601341 MAP3K5Q99683 1374 aa15.08■□□□□ 0
VRK3-223ENST00000601341 MS4A1P11836 297 aa15.08■□□□□ 0
VRK3-223ENST00000601341 DCTN1Q14203 1278 aa15.08■□□□□ 0
VRK3-223ENST00000601341 MSH5O43196 834 aa15.07■□□□□ 0
VRK3-223ENST00000601341 ZNF530Q6P9A1 599 aaPredicted RBP15.07■□□□□ 0
VRK3-223ENST00000601341 MCM10Q7L590 875 aa15.07■□□□□ 0
VRK3-223ENST00000601341 SPG7Q9UQ90 795 aa15.07■□□□□ 0
VRK3-223ENST00000601341 CRB1P82279 1406 aa15.06■□□□□ 0
VRK3-223ENST00000601341 AKAP4Q5JQC9 854 aa15.06■□□□□ 0
VRK3-223ENST00000601341 C1orf141Q5JVX7 400 aa15.06■□□□□ 0
VRK3-223ENST00000601341 CFAP44Q96MT7 982 aa15.06■□□□□ 0
VRK3-223ENST00000601341 ZNF853P0CG23 659 aa15.06■□□□□ 0
VRK3-223ENST00000601341 EXOC6Q8TAG9 804 aa15.06■□□□□ 0
VRK3-223ENST00000601341 LAS1LQ9Y4W2 734 aaKnown RBP15.06■□□□□ 0
VRK3-223ENST00000601341 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.05■□□□□ -0
VRK3-223ENST00000601341 TSR2Q969E8 191 aaKnown RBP15.05■□□□□ -0
VRK3-223ENST00000601341 DLG5Q8TDM6 1919 aa15.05■□□□□ -0
VRK3-223ENST00000601341 MEGF6O75095 1541 aa15.04■□□□□ -0
VRK3-223ENST00000601341 IL2RBP14784 551 aa15.04■□□□□ -0
VRK3-223ENST00000601341 IL17REQ8NFR9 667 aa15.03■□□□□ -0
VRK3-223ENST00000601341 CT47B1P0C2W7 299 aaPredicted RBP15.03■□□□□ -0
VRK3-223ENST00000601341 OVOS2A0A0G2JMS6 1433 aa15.03■□□□□ -0
VRK3-223ENST00000601341 CHL1O00533 1208 aa15.02□□□□□ -0.01
VRK3-223ENST00000601341 FBXO41Q8TF61 875 aa15.02□□□□□ -0.01
VRK3-223ENST00000601341 NGLY1Q96IV0 654 aa15.02□□□□□ -0.01
VRK3-223ENST00000601341 MBIPQ9NS73 344 aa15.02□□□□□ -0.01
VRK3-223ENST00000601341 USP35Q9P2H5 1018 aa15.02□□□□□ -0.01
VRK3-223ENST00000601341 SLIT2O94813 1529 aa15.01□□□□□ -0.01
VRK3-223ENST00000601341 CEMIPQ8WUJ3 1361 aa15.01□□□□□ -0.01
VRK3-223ENST00000601341 EXOSC9Q06265 439 aaKnown RBP15.01□□□□□ -0.01
VRK3-223ENST00000601341 IFNL2Q8IZJ0 200 aa15.01□□□□□ -0.01
VRK3-223ENST00000601341 ZCRB1Q8TBF4 217 aaKnown RBP15.01□□□□□ -0.01
VRK3-223ENST00000601341 C8orf37Q96NL8 207 aa15.01□□□□□ -0.01
VRK3-223ENST00000601341 PHKG2P15735 406 aa15.01□□□□□ -0.01
VRK3-223ENST00000601341 MPRIPQ6WCQ1 1025 aa15.01□□□□□ -0.01
VRK3-223ENST00000601341 ERICH6Q7L0X2 663 aa15.01□□□□□ -0.01
VRK3-223ENST00000601341 BABAM1Q9NWV8 329 aa15□□□□□ -0.01
VRK3-223ENST00000601341 RNMTO43148 476 aaKnown RBP14.99□□□□□ -0.01
VRK3-223ENST00000601341 HSP90AB1P08238 724 aaKnown RBP14.99□□□□□ -0.01
VRK3-223ENST00000601341 ANP32AP39687 249 aaKnown RBP14.99□□□□□ -0.01
VRK3-223ENST00000601341 TEFQ10587 303 aa14.99□□□□□ -0.01
VRK3-223ENST00000601341 TAF7Q15545 349 aaPredicted RBP14.99□□□□□ -0.01
VRK3-223ENST00000601341 UNC5CLQ8IV45 518 aa14.99□□□□□ -0.01
VRK3-223ENST00000601341 LGR6Q9HBX8 967 aa14.99□□□□□ -0.01
VRK3-223ENST00000601341 THRAP3Q9Y2W1 955 aaKnown RBP14.99□□□□□ -0.01
VRK3-223ENST00000601341 PLCH1Q4KWH8 1693 aa14.99□□□□□ -0.01
VRK3-223ENST00000601341 PCDH11XQ9BZA7 1347 aa14.99□□□□□ -0.01
VRK3-223ENST00000601341 PCDH11YQ9BZA8 1340 aa14.99□□□□□ -0.01
VRK3-223ENST00000601341 CYP27B1O15528 508 aa14.98□□□□□ -0.01
VRK3-223ENST00000601341 FNBP4Q8N3X1 1017 aaPredicted RBP14.98□□□□□ -0.01
VRK3-223ENST00000601341 TSPYL4Q9UJ04 414 aa14.98□□□□□ -0.01
VRK3-223ENST00000601341 SPATA31A1Q5TZJ5 1347 aa14.98□□□□□ -0.01
VRK3-223ENST00000601341 MEX3CQ5U5Q3 659 aaKnown RBP14.98□□□□□ -0.01
VRK3-223ENST00000601341 CDCA7Q9BWT1 371 aaPredicted RBP14.98□□□□□ -0.01
VRK3-223ENST00000601341 NWD2Q9ULI1 1742 aa14.97□□□□□ -0.01
VRK3-223ENST00000601341 RARSP54136 660 aaKnown RBP14.97□□□□□ -0.01
VRK3-223ENST00000601341 ZNF428Q96B54 188 aa14.97□□□□□ -0.01
VRK3-223ENST00000601341 DCAF5Q96JK2 942 aa14.97□□□□□ -0.01
VRK3-223ENST00000601341 LRP6O75581 1613 aa14.97□□□□□ -0.01
VRK3-223ENST00000601341 PARP4Q9UKK3 1724 aaKnown RBP14.97□□□□□ -0.01
VRK3-223ENST00000601341 SPATA31A5Q5VU36 1347 aa14.96□□□□□ -0.01
VRK3-223ENST00000601341 SPATA31A7Q8IWB4 1347 aa14.96□□□□□ -0.01
VRK3-223ENST00000601341 MIS18AQ9NYP9 233 aa14.96□□□□□ -0.01
VRK3-223ENST00000601341 CCDC9Q9Y3X0 531 aaKnown RBP14.96□□□□□ -0.01
VRK3-223ENST00000601341 PKD1L3Q7Z443 1732 aa14.96□□□□□ -0.01
VRK3-223ENST00000601341 LRRC37A3O60309 1634 aa14.96□□□□□ -0.01
VRK3-223ENST00000601341 NRAPQ86VF7 1730 aa14.96□□□□□ -0.02
VRK3-223ENST00000601341 DISP2A7MBM2 1401 aa14.96□□□□□ -0.02
VRK3-223ENST00000601341 BCL9LQ86UU0 1499 aa14.95□□□□□ -0.02
VRK3-223ENST00000601341 VPS72Q15906 364 aa14.95□□□□□ -0.02
VRK3-223ENST00000601341 CENPQQ7L2Z9 268 aaPredicted RBP14.95□□□□□ -0.02
VRK3-223ENST00000601341 DDX54Q8TDD1 881 aaKnown RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms