RNA–Protein interactions for RNA: ENST00000600841.1

NOTCH3-205, Transcript of notch 3, humanhuman

TSL 2

Gene NOTCH3, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-205ENST00000600841 KCNQ2O43526 872 aa23.07■■□□□ 1.28
NOTCH3-205ENST00000600841 NBPF14Q5TI25 921 aa23.07■■□□□ 1.28
NOTCH3-205ENST00000600841 ZCRB1Q8TBF4 217 aaKnown RBP23.07■■□□□ 1.28
NOTCH3-205ENST00000600841 RAPGEF4Q8WZA2 1011 aa23.07■■□□□ 1.28
NOTCH3-205ENST00000600841 ACSBG1Q96GR2 724 aa23.07■■□□□ 1.28
NOTCH3-205ENST00000600841 POLKQ9UBT6 870 aa23.07■■□□□ 1.28
NOTCH3-205ENST00000600841 SHANK3Q9BYB0 1731 aa23.04■■□□□ 1.28
NOTCH3-205ENST00000600841 TATP17735 454 aaPredicted RBP23.03■■□□□ 1.28
NOTCH3-205ENST00000600841 MORC1Q86VD1 984 aa23.03■■□□□ 1.28
NOTCH3-205ENST00000600841 BTAF1O14981 1849 aa23.01■■□□□ 1.27
NOTCH3-205ENST00000600841 PROM2Q8N271 834 aa22.99■■□□□ 1.27
NOTCH3-205ENST00000600841 LRP5O75197 1615 aa22.99■■□□□ 1.27
NOTCH3-205ENST00000600841 NCAPD2Q15021 1401 aa22.99■■□□□ 1.27
NOTCH3-205ENST00000600841 TXNRD1Q16881 649 aa22.98■■□□□ 1.27
NOTCH3-205ENST00000600841 AMER1Q5JTC6 1135 aaPredicted RBP22.98■■□□□ 1.27
NOTCH3-205ENST00000600841 EYA1Q99502 592 aa22.98■■□□□ 1.27
NOTCH3-205ENST00000600841 DOT1LQ8TEK3 1739 aa22.97■■□□□ 1.27
NOTCH3-205ENST00000600841 EIF4A2Q14240 407 aaKnown RBP22.97■■□□□ 1.27
NOTCH3-205ENST00000600841 PCDH11XQ9BZA7 1347 aa22.97■■□□□ 1.27
NOTCH3-205ENST00000600841 PCDH11YQ9BZA8 1340 aa22.97■■□□□ 1.27
NOTCH3-205ENST00000600841 SYTL4Q96C24 671 aaPredicted RBP22.96■■□□□ 1.27
NOTCH3-205ENST00000600841 PRIM1P49642 420 aaKnown RBP22.95■■□□□ 1.26
NOTCH3-205ENST00000600841 ANO8Q9HCE9 1232 aaPredicted RBP22.94■■□□□ 1.26
NOTCH3-205ENST00000600841 PKD1L3Q7Z443 1732 aa22.94■■□□□ 1.26
NOTCH3-205ENST00000600841 PER1O15534 1290 aaPredicted RBP22.93■■□□□ 1.26
NOTCH3-205ENST00000600841 SPG7Q9UQ90 795 aa22.91■■□□□ 1.26
NOTCH3-205ENST00000600841 CYP27B1O15528 508 aa22.9■■□□□ 1.26
NOTCH3-205ENST00000600841 STK32BQ9NY57 414 aa22.9■■□□□ 1.26
NOTCH3-205ENST00000600841 IGSF1Q8N6C5 1336 aa22.89■■□□□ 1.26
NOTCH3-205ENST00000600841 CC2D1BQ5T0F9 858 aaKnown RBP22.89■■□□□ 1.25
NOTCH3-205ENST00000600841 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.89■■□□□ 1.25
NOTCH3-205ENST00000600841 SLC27A3Q5K4L6 730 aa22.87■■□□□ 1.25
NOTCH3-205ENST00000600841 SLC15A2Q16348 729 aa22.86■■□□□ 1.25
NOTCH3-205ENST00000600841 PLEKHG2Q9H7P9 1386 aa22.86■■□□□ 1.25
NOTCH3-205ENST00000600841 NPC1L1Q9UHC9 1359 aa22.86■■□□□ 1.25
NOTCH3-205ENST00000600841 LRRC4BQ9NT99 713 aa22.85■■□□□ 1.25
NOTCH3-205ENST00000600841 PAPPAQ13219 1627 aa22.85■■□□□ 1.25
NOTCH3-205ENST00000600841 LY75O60449 1722 aa22.84■■□□□ 1.25
NOTCH3-205ENST00000600841 CASZ1Q86V15 1759 aa22.84■■□□□ 1.25
NOTCH3-205ENST00000600841 MTHFSP49914 203 aa22.83■■□□□ 1.25
NOTCH3-205ENST00000600841 NKX1-1Q15270 411 aaPredicted RBP22.83■■□□□ 1.25
NOTCH3-205ENST00000600841 TOGARAM1Q9Y4F4 1720 aa22.82■■□□□ 1.24
NOTCH3-205ENST00000600841 ITGB4P16144 1822 aa22.82■■□□□ 1.24
NOTCH3-205ENST00000600841 CNGB1Q14028 1251 aaPredicted RBP22.82■■□□□ 1.24
NOTCH3-205ENST00000600841 IFNL2Q8IZJ0 200 aa22.82■■□□□ 1.24
NOTCH3-205ENST00000600841 SPON1Q9HCB6 807 aa22.82■■□□□ 1.24
NOTCH3-205ENST00000600841 IL13P35225 146 aa22.81■■□□□ 1.24
NOTCH3-205ENST00000600841 MPRIPQ6WCQ1 1025 aa22.81■■□□□ 1.24
NOTCH3-205ENST00000600841 PHKG2P15735 406 aa22.8■■□□□ 1.24
NOTCH3-205ENST00000600841 PDGFDQ9GZP0 370 aaPredicted RBP22.8■■□□□ 1.24
NOTCH3-205ENST00000600841 PLEKHO1Q53GL0 409 aaPredicted RBP22.79■■□□□ 1.24
NOTCH3-205ENST00000600841 SULT6B1Q6IMI4 303 aa22.79■■□□□ 1.24
NOTCH3-205ENST00000600841 AEBP1Q8IUX7 1158 aa22.79■■□□□ 1.24
NOTCH3-205ENST00000600841 CCNL1Q9UK58 526 aaPredicted RBP22.79■■□□□ 1.24
NOTCH3-205ENST00000600841 KCNQ4P56696 695 aa22.78■■□□□ 1.24
NOTCH3-205ENST00000600841 ZNF827Q17R98 1081 aa22.78■■□□□ 1.24
NOTCH3-205ENST00000600841 AMOTQ4VCS5 1084 aa22.77■■□□□ 1.24
NOTCH3-205ENST00000600841 KDRP35968 1356 aa22.76■■□□□ 1.23
NOTCH3-205ENST00000600841 ZBTB7AO95365 584 aa22.76■■□□□ 1.23
NOTCH3-205ENST00000600841 PIGBQ92521 554 aa22.76■■□□□ 1.23
NOTCH3-205ENST00000600841 SMARCC1Q92922 1105 aaPredicted RBP22.76■■□□□ 1.23
NOTCH3-205ENST00000600841 AKT1S1Q96B36 256 aa22.76■■□□□ 1.23
NOTCH3-205ENST00000600841 PALLDQ8WX93 1383 aa22.76■■□□□ 1.23
NOTCH3-205ENST00000600841 HSP90AB1P08238 724 aaKnown RBP22.75■■□□□ 1.23
NOTCH3-205ENST00000600841 ZNF530Q6P9A1 599 aaPredicted RBP22.75■■□□□ 1.23
NOTCH3-205ENST00000600841 TMOD3Q9NYL9 352 aa22.75■■□□□ 1.23
NOTCH3-205ENST00000600841 PPP1R1BQ9UD71 204 aaPredicted RBP22.75■■□□□ 1.23
NOTCH3-205ENST00000600841 DIAPH1O60610 1272 aaKnown RBP22.74■■□□□ 1.23
NOTCH3-205ENST00000600841 QSER1Q2KHR3 1735 aa22.73■■□□□ 1.23
NOTCH3-205ENST00000600841 HMGB2P26583 209 aaKnown RBP22.72■■□□□ 1.23
NOTCH3-205ENST00000600841 MTFR1LQ9H019 292 aa22.72■■□□□ 1.23
NOTCH3-205ENST00000600841 TFCP2L1Q9NZI6 479 aa22.72■■□□□ 1.23
NOTCH3-205ENST00000600841 ATF5Q9Y2D1 282 aaPredicted RBP22.72■■□□□ 1.23
NOTCH3-205ENST00000600841 C1orf141Q5JVX7 400 aa22.71■■□□□ 1.23
NOTCH3-205ENST00000600841 DCAF5Q96JK2 942 aa22.71■■□□□ 1.23
NOTCH3-205ENST00000600841 TUBGCP6Q96RT7 1819 aa22.71■■□□□ 1.23
NOTCH3-205ENST00000600841 ERVV-2B6SEH9 535 aa22.7■■□□□ 1.22
NOTCH3-205ENST00000600841 C5P01031 1676 aa22.7■■□□□ 1.22
NOTCH3-205ENST00000600841 HMOX1P09601 288 aa22.69■■□□□ 1.22
NOTCH3-205ENST00000600841 TAF1LQ8IZX4 1826 aa22.68■■□□□ 1.22
NOTCH3-205ENST00000600841 COL3A1P02461 1466 aaPredicted RBP22.68■■□□□ 1.22
NOTCH3-205ENST00000600841 PTGER2P43116 358 aa22.68■■□□□ 1.22
NOTCH3-205ENST00000600841 PNPLA7Q6ZV29 1317 aa22.67■■□□□ 1.22
NOTCH3-205ENST00000600841 ASAP1Q9ULH1 1129 aa22.67■■□□□ 1.22
NOTCH3-205ENST00000600841 KDM6AO15550 1401 aaPredicted RBP22.66■■□□□ 1.22
NOTCH3-205ENST00000600841 SLC16A10Q8TF71 515 aa22.66■■□□□ 1.22
NOTCH3-205ENST00000600841 LOC102724428A0A0B4J2F2 783 aa22.65■■□□□ 1.22
NOTCH3-205ENST00000600841 SIK1P57059 783 aa22.65■■□□□ 1.22
NOTCH3-205ENST00000600841 CABP4P57796 275 aa22.65■■□□□ 1.22
NOTCH3-205ENST00000600841 CFAP53Q96M91 514 aa22.65■■□□□ 1.22
NOTCH3-205ENST00000600841 U2SURPO15042 1029 aaKnown RBP22.64■■□□□ 1.21
NOTCH3-205ENST00000600841 ATG3Q9NT62 314 aa22.64■■□□□ 1.21
NOTCH3-205ENST00000600841 AKAP4Q5JQC9 854 aa22.63■■□□□ 1.21
NOTCH3-205ENST00000600841 C4BP0C0L5 1744 aa22.62■■□□□ 1.21
NOTCH3-205ENST00000600841 PPP2R1AP30153 589 aa22.62■■□□□ 1.21
NOTCH3-205ENST00000600841 SGIP1Q9BQI5 828 aa22.62■■□□□ 1.21
NOTCH3-205ENST00000600841 SCN11AQ9UI33 1791 aa22.62■■□□□ 1.21
NOTCH3-205ENST00000600841 MSH5O43196 834 aa22.61■■□□□ 1.21
NOTCH3-205ENST00000600841 AK7Q96M32 723 aa22.61■■□□□ 1.21
NOTCH3-205ENST00000600841 ATP6V1AP38606 617 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms