RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 QSER1Q2KHR3 1735 aa12.16□□□□□ -0.46
TRIM28-214ENST00000600840 RGPD2P0DJD1 1756 aa12.15□□□□□ -0.46
TRIM28-214ENST00000600840 KIF7Q2M1P5 1343 aa12.15□□□□□ -0.46
TRIM28-214ENST00000600840 WASHC2AQ641Q2 1341 aa12.15□□□□□ -0.46
TRIM28-214ENST00000600840 EXOC5O00471 708 aa12.15□□□□□ -0.46
TRIM28-214ENST00000600840 NLRP2Q9NX02 1062 aa12.15□□□□□ -0.46
TRIM28-214ENST00000600840 CCDC7Q96M83 1385 aa12.15□□□□□ -0.46
TRIM28-214ENST00000600840 KAT6BQ8WYB5 2073 aa12.14□□□□□ -0.47
TRIM28-214ENST00000600840 CDCA7Q9BWT1 371 aaPredicted RBP12.14□□□□□ -0.47
TRIM28-214ENST00000600840 IP6K1Q92551 441 aa12.13□□□□□ -0.47
TRIM28-214ENST00000600840 LTV1Q96GA3 475 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-214ENST00000600840 MAP3K19Q56UN5 1328 aa12.12□□□□□ -0.47
TRIM28-214ENST00000600840 PNPLA7Q6ZV29 1317 aa12.12□□□□□ -0.47
TRIM28-214ENST00000600840 HSPA6P17066 643 aa12.12□□□□□ -0.47
TRIM28-214ENST00000600840 ZNF526Q8TF50 670 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-214ENST00000600840 AKT1S1Q96B36 256 aa12.12□□□□□ -0.47
TRIM28-214ENST00000600840 ANKRD36BQ8N2N9 1353 aa12.12□□□□□ -0.47
TRIM28-214ENST00000600840 FYB1O15117 783 aa12.11□□□□□ -0.47
TRIM28-214ENST00000600840 IL2RBP14784 551 aa12.11□□□□□ -0.47
TRIM28-214ENST00000600840 POLD1P28340 1107 aa12.11□□□□□ -0.47
TRIM28-214ENST00000600840 KCNQ4P56696 695 aa12.11□□□□□ -0.47
TRIM28-214ENST00000600840 CDCA8Q53HL2 280 aa12.11□□□□□ -0.47
TRIM28-214ENST00000600840 GGNBP2Q9H3C7 697 aa12.11□□□□□ -0.47
TRIM28-214ENST00000600840 FAM208AQ9UK61 1670 aaKnown RBP12.1□□□□□ -0.47
TRIM28-214ENST00000600840 ZNF316A6NFI3 1004 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-214ENST00000600840 HOXC9P31274 260 aa12.1□□□□□ -0.47
TRIM28-214ENST00000600840 RRS1Q15050 365 aaKnown RBP12.1□□□□□ -0.47
TRIM28-214ENST00000600840 COG3Q96JB2 828 aa12.1□□□□□ -0.47
TRIM28-214ENST00000600840 CARD14Q9BXL6 1004 aa12.1□□□□□ -0.47
TRIM28-214ENST00000600840 SLC16A10Q8TF71 515 aa12.09□□□□□ -0.47
TRIM28-214ENST00000600840 GPBP1L1Q9HC44 474 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-214ENST00000600840 PER1O15534 1290 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-214ENST00000600840 CEP350Q5VT06 3117 aa12.08□□□□□ -0.48
TRIM28-214ENST00000600840 ADCY9O60503 1353 aa12.07□□□□□ -0.48
TRIM28-214ENST00000600840 KIF20BQ96Q89 1820 aa12.07□□□□□ -0.48
TRIM28-214ENST00000600840 GRIN3BO60391 1043 aa12.07□□□□□ -0.48
TRIM28-214ENST00000600840 AMPHP49418 695 aa12.07□□□□□ -0.48
TRIM28-214ENST00000600840 LY75O60449 1722 aa12.06□□□□□ -0.48
TRIM28-214ENST00000600840 NBPF6Q5VWK0 638 aa12.06□□□□□ -0.48
TRIM28-214ENST00000600840 USHBP1Q8N6Y0 703 aa12.06□□□□□ -0.48
TRIM28-214ENST00000600840 DDX54Q8TDD1 881 aaKnown RBP12.06□□□□□ -0.48
TRIM28-214ENST00000600840 NBPF4Q96M43 638 aa12.06□□□□□ -0.48
TRIM28-214ENST00000600840 TFCP2L1Q9NZI6 479 aa12.06□□□□□ -0.48
TRIM28-214ENST00000600840 MEGF6O75095 1541 aa12.06□□□□□ -0.48
TRIM28-214ENST00000600840 DOT1LQ8TEK3 1739 aa12.06□□□□□ -0.48
TRIM28-214ENST00000600840 MSL1Q68DK7 614 aa12.05□□□□□ -0.48
TRIM28-214ENST00000600840 HSP90AB2PQ58FF8 381 aa12.04□□□□□ -0.48
TRIM28-214ENST00000600840 PANK3Q9H999 370 aa12.04□□□□□ -0.48
TRIM28-214ENST00000600840 WWC3Q9ULE0 1092 aa12.04□□□□□ -0.48
TRIM28-214ENST00000600840 MSH5O43196 834 aa12.03□□□□□ -0.48
TRIM28-214ENST00000600840 SLC27A3Q5K4L6 730 aa12.03□□□□□ -0.48
TRIM28-214ENST00000600840 NSD3Q9BZ95 1437 aa12.03□□□□□ -0.48
TRIM28-214ENST00000600840 PRIM1P49642 420 aaKnown RBP12.02□□□□□ -0.49
TRIM28-214ENST00000600840 COL23A1Q86Y22 540 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-214ENST00000600840 ZCRB1Q8TBF4 217 aaKnown RBP12.02□□□□□ -0.49
TRIM28-214ENST00000600840 EMILIN1Q9Y6C2 1016 aa12.02□□□□□ -0.49
TRIM28-214ENST00000600840 RTL1A6NKG5 1358 aa12.02□□□□□ -0.49
TRIM28-214ENST00000600840 NSD2O96028 1365 aa12.02□□□□□ -0.49
TRIM28-214ENST00000600840 KIF3CO14782 793 aa12.01□□□□□ -0.49
TRIM28-214ENST00000600840 CAPN15O75808 1086 aa12.01□□□□□ -0.49
TRIM28-214ENST00000600840 SYTL4Q96C24 671 aaPredicted RBP12.01□□□□□ -0.49
TRIM28-214ENST00000600840 MAP2P11137 1827 aaKnown RBP12.01□□□□□ -0.49
TRIM28-214ENST00000600840 DDX10Q13206 875 aaKnown RBP12□□□□□ -0.49
TRIM28-214ENST00000600840 POLR3GLQ9BT43 218 aa12□□□□□ -0.49
TRIM28-214ENST00000600840 INSRP06213 1382 aa12□□□□□ -0.49
TRIM28-214ENST00000600840 GOLGB1Q14789 3259 aaKnown RBP11.99□□□□□ -0.49
TRIM28-214ENST00000600840 AMER1Q5JTC6 1135 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-214ENST00000600840 C5P01031 1676 aa11.99□□□□□ -0.49
TRIM28-214ENST00000600840 WDR90Q96KV7 1748 aa11.98□□□□□ -0.49
TRIM28-214ENST00000600840 ANKRD26Q9UPS8 1709 aa11.98□□□□□ -0.49
TRIM28-214ENST00000600840 FLT4P35916 1363 aa11.98□□□□□ -0.49
TRIM28-214ENST00000600840 COL13A1Q5TAT6 717 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-214ENST00000600840 DNAJC5GQ8N7S2 189 aa11.98□□□□□ -0.49
TRIM28-214ENST00000600840 CCNL1Q9UK58 526 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-214ENST00000600840 TAF1LQ8IZX4 1826 aa11.97□□□□□ -0.49
TRIM28-214ENST00000600840 TOGARAM1Q9Y4F4 1720 aa11.97□□□□□ -0.49
TRIM28-214ENST00000600840 NPC1L1Q9UHC9 1359 aa11.96□□□□□ -0.49
TRIM28-214ENST00000600840 PPM1GO15355 546 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-214ENST00000600840 CYP27B1O15528 508 aa11.96□□□□□ -0.49
TRIM28-214ENST00000600840 APLP1P51693 650 aa11.96□□□□□ -0.49
TRIM28-214ENST00000600840 POLKQ9UBT6 870 aa11.96□□□□□ -0.49
TRIM28-214ENST00000600840 CD2APQ9Y5K6 639 aa11.96□□□□□ -0.49
TRIM28-214ENST00000600840 IGSF1Q8N6C5 1336 aa11.95□□□□□ -0.5
TRIM28-214ENST00000600840 TATP17735 454 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-214ENST00000600840 HTRA3P83110 453 aa11.95□□□□□ -0.5
TRIM28-214ENST00000600840 RAPGEF4Q8WZA2 1011 aa11.95□□□□□ -0.5
TRIM28-214ENST00000600840 EYA1Q99502 592 aa11.95□□□□□ -0.5
TRIM28-214ENST00000600840 ITGB4P16144 1822 aa11.95□□□□□ -0.5
TRIM28-214ENST00000600840 NCAPD2Q15021 1401 aa11.94□□□□□ -0.5
TRIM28-214ENST00000600840 SMG6Q86US8 1419 aaKnown RBP11.94□□□□□ -0.5
TRIM28-214ENST00000600840 PKD1L3Q7Z443 1732 aa11.94□□□□□ -0.5
TRIM28-214ENST00000600840 KIF24Q5T7B8 1368 aa11.94□□□□□ -0.5
TRIM28-214ENST00000600840 TNNT2P45379 298 aaPredicted RBP11.94□□□□□ -0.5
TRIM28-214ENST00000600840 SMIM5Q71RC9 77 aa11.94□□□□□ -0.5
TRIM28-214ENST00000600840 CGNL1Q0VF96 1302 aa11.93□□□□□ -0.5
TRIM28-214ENST00000600840 CICQ96RK0 1608 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-214ENST00000600840 AMIGO3Q86WK7 504 aa11.92□□□□□ -0.5
TRIM28-214ENST00000600840 KNSTRNQ9Y448 316 aa11.92□□□□□ -0.5
TRIM28-214ENST00000600840 PCDH11XQ9BZA7 1347 aa11.91□□□□□ -0.5
TRIM28-214ENST00000600840 PCDH11YQ9BZA8 1340 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms