RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 HSP90AB2PQ58FF8 381 aa15.81■□□□□ 0.12
HIF3A-217ENST00000600236 USHBP1Q8N6Y0 703 aa15.81■□□□□ 0.12
HIF3A-217ENST00000600236 POLR3GLQ9BT43 218 aa15.81■□□□□ 0.12
HIF3A-217ENST00000600236 CARD14Q9BXL6 1004 aa15.81■□□□□ 0.12
HIF3A-217ENST00000600236 PDGFDQ9GZP0 370 aaPredicted RBP15.81■□□□□ 0.12
HIF3A-217ENST00000600236 ATF5Q9Y2D1 282 aaPredicted RBP15.81■□□□□ 0.12
HIF3A-217ENST00000600236 PCDH11XQ9BZA7 1347 aa15.8■□□□□ 0.12
HIF3A-217ENST00000600236 PCDH11YQ9BZA8 1340 aa15.8■□□□□ 0.12
HIF3A-217ENST00000600236 EIF4G2P78344 907 aaKnown RBP eCLIP15.8■□□□□ 0.12
HIF3A-217ENST00000600236 CCER1Q8TC90 406 aaPredicted RBP15.8■□□□□ 0.12
HIF3A-217ENST00000600236 KIF20BQ96Q89 1820 aa15.8■□□□□ 0.12
HIF3A-217ENST00000600236 HMGB2P26583 209 aaKnown RBP15.79■□□□□ 0.12
HIF3A-217ENST00000600236 BTAF1O14981 1849 aa15.79■□□□□ 0.12
HIF3A-217ENST00000600236 PPM1GO15355 546 aaPredicted RBP15.78■□□□□ 0.12
HIF3A-217ENST00000600236 PTGER2P43116 358 aa15.78■□□□□ 0.12
HIF3A-217ENST00000600236 LRRC4BQ9NT99 713 aa15.78■□□□□ 0.12
HIF3A-217ENST00000600236 EMILIN1Q9Y6C2 1016 aa15.78■□□□□ 0.12
HIF3A-217ENST00000600236 PAPPAQ13219 1627 aa15.78■□□□□ 0.12
HIF3A-217ENST00000600236 MYOM1P52179 1685 aa15.77■□□□□ 0.12
HIF3A-217ENST00000600236 ZNF827Q17R98 1081 aa15.77■□□□□ 0.12
HIF3A-217ENST00000600236 SLC16A10Q8TF71 515 aa15.76■□□□□ 0.11
HIF3A-217ENST00000600236 AKT1S1Q96B36 256 aa15.76■□□□□ 0.11
HIF3A-217ENST00000600236 TFCP2L1Q9NZI6 479 aa15.76■□□□□ 0.11
HIF3A-217ENST00000600236 YY1P25490 414 aa15.75■□□□□ 0.11
HIF3A-217ENST00000600236 CCNL1Q9UK58 526 aaPredicted RBP15.75■□□□□ 0.11
HIF3A-217ENST00000600236 NSD2O96028 1365 aa15.75■□□□□ 0.11
HIF3A-217ENST00000600236 DOT1LQ8TEK3 1739 aa15.74■□□□□ 0.11
HIF3A-217ENST00000600236 WASHC2AQ641Q2 1341 aa15.74■□□□□ 0.11
HIF3A-217ENST00000600236 POLD1P28340 1107 aa15.74■□□□□ 0.11
HIF3A-217ENST00000600236 ARXQ96QS3 562 aa15.74■□□□□ 0.11
HIF3A-217ENST00000600236 HSPA5P11021 654 aaKnown RBP15.73■□□□□ 0.11
HIF3A-217ENST00000600236 SGIP1Q9BQI5 828 aa15.73■□□□□ 0.11
HIF3A-217ENST00000600236 SYT17Q9BSW7 474 aa15.73■□□□□ 0.11
HIF3A-217ENST00000600236 FHDC1Q9C0D6 1143 aaPredicted RBP15.73■□□□□ 0.11
HIF3A-217ENST00000600236 SPG7Q9UQ90 795 aa15.73■□□□□ 0.11
HIF3A-217ENST00000600236 RGPD2P0DJD1 1756 aa15.72■□□□□ 0.11
HIF3A-217ENST00000600236 SHANK3Q9BYB0 1731 aa15.71■□□□□ 0.11
HIF3A-217ENST00000600236 PNPLA7Q6ZV29 1317 aa15.71■□□□□ 0.11
HIF3A-217ENST00000600236 POLKQ9UBT6 870 aa15.71■□□□□ 0.11
HIF3A-217ENST00000600236 NCAPD2Q15021 1401 aa15.7■□□□□ 0.1
HIF3A-217ENST00000600236 CYP27B1O15528 508 aa15.7■□□□□ 0.1
HIF3A-217ENST00000600236 KCNQ4P56696 695 aa15.7■□□□□ 0.1
HIF3A-217ENST00000600236 MPRIPQ6WCQ1 1025 aa15.7■□□□□ 0.1
HIF3A-217ENST00000600236 SMARCC1Q92922 1105 aaPredicted RBP15.7■□□□□ 0.1
HIF3A-217ENST00000600236 PALLDQ8WX93 1383 aa15.7■□□□□ 0.1
HIF3A-217ENST00000600236 TNNT2P45379 298 aaPredicted RBP15.69■□□□□ 0.1
HIF3A-217ENST00000600236 EYA1Q99502 592 aa15.69■□□□□ 0.1
HIF3A-217ENST00000600236 PANK3Q9H999 370 aa15.69■□□□□ 0.1
HIF3A-217ENST00000600236 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.69■□□□□ 0.1
HIF3A-217ENST00000600236 MAP3K5Q99683 1374 aa15.69■□□□□ 0.1
HIF3A-217ENST00000600236 KAT6BQ8WYB5 2073 aa15.68■□□□□ 0.1
HIF3A-217ENST00000600236 PLEKHG2Q9H7P9 1386 aa15.68■□□□□ 0.1
HIF3A-217ENST00000600236 MSH5O43196 834 aa15.68■□□□□ 0.1
HIF3A-217ENST00000600236 NKX1-1Q15270 411 aaPredicted RBP15.67■□□□□ 0.1
HIF3A-217ENST00000600236 KLHL34Q8N239 644 aa15.67■□□□□ 0.1
HIF3A-217ENST00000600236 FLAD1Q8NFF5 587 aa15.67■□□□□ 0.1
HIF3A-217ENST00000600236 LY75O60449 1722 aa15.67■□□□□ 0.1
HIF3A-217ENST00000600236 ANKRD26Q9UPS8 1709 aa15.67■□□□□ 0.1
HIF3A-217ENST00000600236 EIF4A2Q14240 407 aaKnown RBP15.66■□□□□ 0.1
HIF3A-217ENST00000600236 IFNL2Q8IZJ0 200 aa15.66■□□□□ 0.1
HIF3A-217ENST00000600236 QSER1Q2KHR3 1735 aa15.65■□□□□ 0.1
HIF3A-217ENST00000600236 MORC1Q86VD1 984 aa15.65■□□□□ 0.1
HIF3A-217ENST00000600236 TMOD3Q9NYL9 352 aa15.65■□□□□ 0.1
HIF3A-217ENST00000600236 KNSTRNQ9Y448 316 aa15.65■□□□□ 0.1
HIF3A-217ENST00000600236 PKD1L3Q7Z443 1732 aa15.65■□□□□ 0.1
HIF3A-217ENST00000600236 AK7Q96M32 723 aa15.64■□□□□ 0.09
HIF3A-217ENST00000600236 PHKG2P15735 406 aa15.63■□□□□ 0.09
HIF3A-217ENST00000600236 COL23A1Q86Y22 540 aaPredicted RBP15.63■□□□□ 0.09
HIF3A-217ENST00000600236 PIGBQ92521 554 aa15.63■□□□□ 0.09
HIF3A-217ENST00000600236 HSP90AB1P08238 724 aaKnown RBP15.62■□□□□ 0.09
HIF3A-217ENST00000600236 GPR162Q16538 588 aa15.62■□□□□ 0.09
HIF3A-217ENST00000600236 IGSF1Q8N6C5 1336 aa15.62■□□□□ 0.09
HIF3A-217ENST00000600236 PLEKHO1Q53GL0 409 aaPredicted RBP15.61■□□□□ 0.09
HIF3A-217ENST00000600236 AMOTQ4VCS5 1084 aa15.6■□□□□ 0.09
HIF3A-217ENST00000600236 MAP2P11137 1827 aaKnown RBP15.59■□□□□ 0.09
HIF3A-217ENST00000600236 LOC102724428A0A0B4J2F2 783 aa15.59■□□□□ 0.09
HIF3A-217ENST00000600236 SIK1P57059 783 aa15.59■□□□□ 0.09
HIF3A-217ENST00000600236 C5P01031 1676 aa15.59■□□□□ 0.09
HIF3A-217ENST00000600236 TOGARAM1Q9Y4F4 1720 aa15.59■□□□□ 0.09
HIF3A-217ENST00000600236 MSL1Q68DK7 614 aa15.58■□□□□ 0.08
HIF3A-217ENST00000600236 PELP1Q8IZL8 1130 aaKnown RBP15.58■□□□□ 0.08
HIF3A-217ENST00000600236 DCAF5Q96JK2 942 aa15.58■□□□□ 0.08
HIF3A-217ENST00000600236 ERVV-2B6SEH9 535 aa15.57■□□□□ 0.08
HIF3A-217ENST00000600236 PHF14O94880 888 aa15.57■□□□□ 0.08
HIF3A-217ENST00000600236 SSFA2P28290 1259 aa15.57■□□□□ 0.08
HIF3A-217ENST00000600236 ATP6V1AP38606 617 aa15.57■□□□□ 0.08
HIF3A-217ENST00000600236 TUBGCP6Q96RT7 1819 aa15.57■□□□□ 0.08
HIF3A-217ENST00000600236 C1orf141Q5JVX7 400 aa15.56■□□□□ 0.08
HIF3A-217ENST00000600236 ZNF530Q6P9A1 599 aaPredicted RBP15.56■□□□□ 0.08
HIF3A-217ENST00000600236 ASAP1Q9ULH1 1129 aa15.56■□□□□ 0.08
HIF3A-217ENST00000600236 KIF7Q2M1P5 1343 aa15.56■□□□□ 0.08
HIF3A-217ENST00000600236 C4BP0C0L5 1744 aa15.56■□□□□ 0.08
HIF3A-217ENST00000600236 COL24A1Q17RW2 1714 aa15.55■□□□□ 0.08
HIF3A-217ENST00000600236 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.55■□□□□ 0.08
HIF3A-217ENST00000600236 CABP4P57796 275 aa15.55■□□□□ 0.08
HIF3A-217ENST00000600236 ATG3Q9NT62 314 aa15.55■□□□□ 0.08
HIF3A-217ENST00000600236 GNPATO15228 680 aa15.54■□□□□ 0.08
HIF3A-217ENST00000600236 GRIN3BO60391 1043 aa15.54■□□□□ 0.08
HIF3A-217ENST00000600236 LINC00116Q8NCU8 138 aa15.54■□□□□ 0.08
HIF3A-217ENST00000600236 NLGN2Q8NFZ4 835 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms