RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 POLKQ9UBT6 870 aa16.79■□□□□ 0.28
LIG1-217ENST00000599165 PKD1L3Q7Z443 1732 aa16.78■□□□□ 0.28
LIG1-217ENST00000599165 SMG6Q86US8 1419 aaKnown RBP16.78■□□□□ 0.28
LIG1-217ENST00000599165 WASHC2AQ641Q2 1341 aa16.77■□□□□ 0.28
LIG1-217ENST00000599165 ACSBG1Q96GR2 724 aa16.77■□□□□ 0.28
LIG1-217ENST00000599165 ANO8Q9HCE9 1232 aaPredicted RBP16.76■□□□□ 0.27
LIG1-217ENST00000599165 PAPPAQ13219 1627 aa16.76■□□□□ 0.27
LIG1-217ENST00000599165 NSD2O96028 1365 aa16.76■□□□□ 0.27
LIG1-217ENST00000599165 TOGARAM1Q9Y4F4 1720 aa16.74■□□□□ 0.27
LIG1-217ENST00000599165 TNNT2P45379 298 aaPredicted RBP16.74■□□□□ 0.27
LIG1-217ENST00000599165 AMER1Q5JTC6 1135 aaPredicted RBP16.74■□□□□ 0.27
LIG1-217ENST00000599165 DDX54Q8TDD1 881 aaKnown RBP16.74■□□□□ 0.27
LIG1-217ENST00000599165 CASZ1Q86V15 1759 aa16.74■□□□□ 0.27
LIG1-217ENST00000599165 PPM1GO15355 546 aaPredicted RBP16.73■□□□□ 0.27
LIG1-217ENST00000599165 PER1O15534 1290 aaPredicted RBP16.73■□□□□ 0.27
LIG1-217ENST00000599165 ZCRB1Q8TBF4 217 aaKnown RBP16.73■□□□□ 0.27
LIG1-217ENST00000599165 TXNRD1Q16881 649 aa16.72■□□□□ 0.27
LIG1-217ENST00000599165 EYA1Q99502 592 aa16.72■□□□□ 0.27
LIG1-217ENST00000599165 LY75O60449 1722 aa16.71■□□□□ 0.27
LIG1-217ENST00000599165 EIF4A2Q14240 407 aaKnown RBP16.71■□□□□ 0.27
LIG1-217ENST00000599165 ITGB4P16144 1822 aa16.7■□□□□ 0.26
LIG1-217ENST00000599165 CYP27B1O15528 508 aa16.69■□□□□ 0.26
LIG1-217ENST00000599165 RAPGEF4Q8WZA2 1011 aa16.69■□□□□ 0.26
LIG1-217ENST00000599165 TATP17735 454 aaPredicted RBP16.68■□□□□ 0.26
LIG1-217ENST00000599165 PRIM1P49642 420 aaKnown RBP16.68■□□□□ 0.26
LIG1-217ENST00000599165 PDGFDQ9GZP0 370 aaPredicted RBP16.68■□□□□ 0.26
LIG1-217ENST00000599165 NBPF14Q5TI25 921 aa16.67■□□□□ 0.26
LIG1-217ENST00000599165 MORC1Q86VD1 984 aa16.67■□□□□ 0.26
LIG1-217ENST00000599165 LRRC4BQ9NT99 713 aa16.67■□□□□ 0.26
LIG1-217ENST00000599165 KNSTRNQ9Y448 316 aa16.67■□□□□ 0.26
LIG1-217ENST00000599165 IGSF1Q8N6C5 1336 aa16.67■□□□□ 0.26
LIG1-217ENST00000599165 TUBGCP6Q96RT7 1819 aa16.66■□□□□ 0.26
LIG1-217ENST00000599165 PCDH11XQ9BZA7 1347 aa16.65■□□□□ 0.26
LIG1-217ENST00000599165 PCDH11YQ9BZA8 1340 aa16.65■□□□□ 0.26
LIG1-217ENST00000599165 QSER1Q2KHR3 1735 aa16.63■□□□□ 0.25
LIG1-217ENST00000599165 NKX1-1Q15270 411 aaPredicted RBP16.62■□□□□ 0.25
LIG1-217ENST00000599165 SLC15A2Q16348 729 aa16.62■□□□□ 0.25
LIG1-217ENST00000599165 ZNF827Q17R98 1081 aa16.62■□□□□ 0.25
LIG1-217ENST00000599165 SYTL4Q96C24 671 aaPredicted RBP16.62■□□□□ 0.25
LIG1-217ENST00000599165 NPC1L1Q9UHC9 1359 aa16.62■□□□□ 0.25
LIG1-217ENST00000599165 TAF1LQ8IZX4 1826 aa16.61■□□□□ 0.25
LIG1-217ENST00000599165 KCNQ4P56696 695 aa16.61■□□□□ 0.25
LIG1-217ENST00000599165 AEBP1Q8IUX7 1158 aa16.61■□□□□ 0.25
LIG1-217ENST00000599165 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.61■□□□□ 0.25
LIG1-217ENST00000599165 IL13P35225 146 aa16.6■□□□□ 0.25
LIG1-217ENST00000599165 CC2D1BQ5T0F9 858 aaKnown RBP16.6■□□□□ 0.25
LIG1-217ENST00000599165 PLEKHG2Q9H7P9 1386 aa16.6■□□□□ 0.25
LIG1-217ENST00000599165 COL3A1P02461 1466 aaPredicted RBP16.6■□□□□ 0.25
LIG1-217ENST00000599165 AKT1S1Q96B36 256 aa16.59■□□□□ 0.25
LIG1-217ENST00000599165 KDRP35968 1356 aa16.59■□□□□ 0.25
LIG1-217ENST00000599165 C5P01031 1676 aa16.59■□□□□ 0.25
LIG1-217ENST00000599165 PHKG2P15735 406 aa16.58■□□□□ 0.24
LIG1-217ENST00000599165 MTHFSP49914 203 aa16.58■□□□□ 0.24
LIG1-217ENST00000599165 SLC27A3Q5K4L6 730 aa16.58■□□□□ 0.24
LIG1-217ENST00000599165 STK32BQ9NY57 414 aa16.58■□□□□ 0.24
LIG1-217ENST00000599165 SPG7Q9UQ90 795 aa16.58■□□□□ 0.24
LIG1-217ENST00000599165 COL24A1Q17RW2 1714 aa16.58■□□□□ 0.24
LIG1-217ENST00000599165 PIGBQ92521 554 aa16.56■□□□□ 0.24
LIG1-217ENST00000599165 KDM6AO15550 1401 aaPredicted RBP16.55■□□□□ 0.24
LIG1-217ENST00000599165 PTGER2P43116 358 aa16.55■□□□□ 0.24
LIG1-217ENST00000599165 MPRIPQ6WCQ1 1025 aa16.55■□□□□ 0.24
LIG1-217ENST00000599165 SPON1Q9HCB6 807 aa16.55■□□□□ 0.24
LIG1-217ENST00000599165 PALLDQ8WX93 1383 aa16.54■□□□□ 0.24
LIG1-217ENST00000599165 ZBTB7AO95365 584 aa16.54■□□□□ 0.24
LIG1-217ENST00000599165 IFNL2Q8IZJ0 200 aa16.54■□□□□ 0.24
LIG1-217ENST00000599165 SGIP1Q9BQI5 828 aa16.54■□□□□ 0.24
LIG1-217ENST00000599165 VIRMAQ69YN4 1812 aaKnown RBP16.54■□□□□ 0.24
LIG1-217ENST00000599165 PNPLA7Q6ZV29 1317 aa16.53■□□□□ 0.24
LIG1-217ENST00000599165 SULT6B1Q6IMI4 303 aa16.53■□□□□ 0.24
LIG1-217ENST00000599165 CCNL1Q9UK58 526 aaPredicted RBP16.53■□□□□ 0.24
LIG1-217ENST00000599165 SCN11AQ9UI33 1791 aa16.52■□□□□ 0.24
LIG1-217ENST00000599165 C4BP0C0L5 1744 aa16.51■□□□□ 0.23
LIG1-217ENST00000599165 UBR3Q6ZT12 1888 aa16.51■□□□□ 0.23
LIG1-217ENST00000599165 CNGB1Q14028 1251 aaPredicted RBP16.51■□□□□ 0.23
LIG1-217ENST00000599165 ATF5Q9Y2D1 282 aaPredicted RBP16.51■□□□□ 0.23
LIG1-217ENST00000599165 ADAMTS7Q9UKP4 1686 aa16.5■□□□□ 0.23
LIG1-217ENST00000599165 PLEKHO1Q53GL0 409 aaPredicted RBP16.49■□□□□ 0.23
LIG1-217ENST00000599165 ZNF530Q6P9A1 599 aaPredicted RBP16.49■□□□□ 0.23
LIG1-217ENST00000599165 AMIGO3Q86WK7 504 aa16.49■□□□□ 0.23
LIG1-217ENST00000599165 MTFR1LQ9H019 292 aa16.49■□□□□ 0.23
LIG1-217ENST00000599165 ASAP1Q9ULH1 1129 aa16.49■□□□□ 0.23
LIG1-217ENST00000599165 HMOX1P09601 288 aa16.48■□□□□ 0.23
LIG1-217ENST00000599165 AMOTQ4VCS5 1084 aa16.48■□□□□ 0.23
LIG1-217ENST00000599165 ATG3Q9NT62 314 aa16.48■□□□□ 0.23
LIG1-217ENST00000599165 ZNF831Q5JPB2 1677 aa16.48■□□□□ 0.23
LIG1-217ENST00000599165 DIAPH1O60610 1272 aaKnown RBP16.47■□□□□ 0.23
LIG1-217ENST00000599165 DCAF5Q96JK2 942 aa16.47■□□□□ 0.23
LIG1-217ENST00000599165 TMOD3Q9NYL9 352 aa16.47■□□□□ 0.23
LIG1-217ENST00000599165 COL5A3P25940 1745 aaPredicted RBP16.47■□□□□ 0.23
LIG1-217ENST00000599165 ERVV-2B6SEH9 535 aa16.46■□□□□ 0.23
LIG1-217ENST00000599165 ITPK1Q13572 414 aa16.46■□□□□ 0.23
LIG1-217ENST00000599165 SMARCC1Q92922 1105 aaPredicted RBP16.46■□□□□ 0.23
LIG1-217ENST00000599165 SLC4A9Q96Q91 983 aa16.46■□□□□ 0.23
LIG1-217ENST00000599165 LOC102724428A0A0B4J2F2 783 aa16.45■□□□□ 0.22
LIG1-217ENST00000599165 SIK1P57059 783 aa16.45■□□□□ 0.22
LIG1-217ENST00000599165 COL23A1Q86Y22 540 aaPredicted RBP16.45■□□□□ 0.22
LIG1-217ENST00000599165 LINC00116Q8NCU8 138 aa16.45■□□□□ 0.22
LIG1-217ENST00000599165 TFCP2L1Q9NZI6 479 aa16.45■□□□□ 0.22
LIG1-217ENST00000599165 MRC1P22897 1456 aa16.45■□□□□ 0.22
LIG1-217ENST00000599165 MYH14Q7Z406 1995 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms