RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SHANK3Q9BYB0 1731 aa20.8■□□□□ 0.92
TRIM28-205ENST00000595028 CHD4Q14839 1912 aa20.8■□□□□ 0.92
TRIM28-205ENST00000595028 NHSQ6T4R5 1651 aa20.8■□□□□ 0.92
TRIM28-205ENST00000595028 EMILIN1Q9Y6C2 1016 aa20.79■□□□□ 0.92
TRIM28-205ENST00000595028 MEGF6O75095 1541 aa20.78■□□□□ 0.92
TRIM28-205ENST00000595028 ZBTB7AO95365 584 aa20.78■□□□□ 0.92
TRIM28-205ENST00000595028 PLSCR1O15162 318 aa20.77■□□□□ 0.92
TRIM28-205ENST00000595028 PTGER2P43116 358 aa20.77■□□□□ 0.92
TRIM28-205ENST00000595028 HSP90AB2PQ58FF8 381 aa20.77■□□□□ 0.92
TRIM28-205ENST00000595028 NBPF6Q5VWK0 638 aa20.74■□□□□ 0.91
TRIM28-205ENST00000595028 NBPF4Q96M43 638 aa20.74■□□□□ 0.91
TRIM28-205ENST00000595028 FHDC1Q9C0D6 1143 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-205ENST00000595028 BCL11BQ9C0K0 894 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-205ENST00000595028 ATF5Q9Y2D1 282 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-205ENST00000595028 NCAPD2Q15021 1401 aa20.73■□□□□ 0.91
TRIM28-205ENST00000595028 SYT17Q9BSW7 474 aa20.73■□□□□ 0.91
TRIM28-205ENST00000595028 PPM1GO15355 546 aaPredicted RBP20.72■□□□□ 0.91
TRIM28-205ENST00000595028 PTF1AQ7RTS3 328 aa20.72■□□□□ 0.91
TRIM28-205ENST00000595028 USHBP1Q8N6Y0 703 aa20.72■□□□□ 0.91
TRIM28-205ENST00000595028 POLKQ9UBT6 870 aa20.72■□□□□ 0.91
TRIM28-205ENST00000595028 KNSTRNQ9Y448 316 aa20.72■□□□□ 0.91
TRIM28-205ENST00000595028 WASHC2AQ641Q2 1341 aa20.72■□□□□ 0.91
TRIM28-205ENST00000595028 DOT1LQ8TEK3 1739 aa20.71■□□□□ 0.91
TRIM28-205ENST00000595028 PROM2Q8N271 834 aa20.71■□□□□ 0.91
TRIM28-205ENST00000595028 BTAF1O14981 1849 aa20.71■□□□□ 0.91
TRIM28-205ENST00000595028 PKD1L3Q7Z443 1732 aa20.7■□□□□ 0.9
TRIM28-205ENST00000595028 TNNT2P45379 298 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-205ENST00000595028 KAT6BQ8WYB5 2073 aa20.69■□□□□ 0.9
TRIM28-205ENST00000595028 AMER1Q5JTC6 1135 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-205ENST00000595028 GOLGB1Q14789 3259 aaKnown RBP20.67■□□□□ 0.9
TRIM28-205ENST00000595028 RAPGEF4Q8WZA2 1011 aa20.67■□□□□ 0.9
TRIM28-205ENST00000595028 MORC1Q86VD1 984 aa20.66■□□□□ 0.9
TRIM28-205ENST00000595028 ZCRB1Q8TBF4 217 aaKnown RBP20.66■□□□□ 0.9
TRIM28-205ENST00000595028 DDX54Q8TDD1 881 aaKnown RBP20.66■□□□□ 0.9
TRIM28-205ENST00000595028 ACSBG1Q96GR2 724 aa20.66■□□□□ 0.9
TRIM28-205ENST00000595028 TATP17735 454 aaPredicted RBP20.65■□□□□ 0.9
TRIM28-205ENST00000595028 SGIP1Q9BQI5 828 aa20.65■□□□□ 0.9
TRIM28-205ENST00000595028 STK32BQ9NY57 414 aa20.65■□□□□ 0.9
TRIM28-205ENST00000595028 MTFR1LQ9H019 292 aa20.64■□□□□ 0.89
TRIM28-205ENST00000595028 EIF4A2Q14240 407 aaKnown RBP20.63■□□□□ 0.89
TRIM28-205ENST00000595028 SLC15A2Q16348 729 aa20.63■□□□□ 0.89
TRIM28-205ENST00000595028 PER1O15534 1290 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-205ENST00000595028 GIGYF1O75420 1035 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-205ENST00000595028 EYA1Q99502 592 aa20.62■□□□□ 0.89
TRIM28-205ENST00000595028 PCDH11XQ9BZA7 1347 aa20.61■□□□□ 0.89
TRIM28-205ENST00000595028 PCDH11YQ9BZA8 1340 aa20.61■□□□□ 0.89
TRIM28-205ENST00000595028 TXNRD1Q16881 649 aa20.61■□□□□ 0.89
TRIM28-205ENST00000595028 TOGARAM1Q9Y4F4 1720 aa20.61■□□□□ 0.89
TRIM28-205ENST00000595028 NPC1L1Q9UHC9 1359 aa20.6■□□□□ 0.89
TRIM28-205ENST00000595028 PAPPAQ13219 1627 aa20.6■□□□□ 0.89
TRIM28-205ENST00000595028 IGSF1Q8N6C5 1336 aa20.59■□□□□ 0.89
TRIM28-205ENST00000595028 ARXQ96QS3 562 aa20.59■□□□□ 0.89
TRIM28-205ENST00000595028 PLEKHG2Q9H7P9 1386 aa20.59■□□□□ 0.89
TRIM28-205ENST00000595028 LY75O60449 1722 aa20.58■□□□□ 0.88
TRIM28-205ENST00000595028 MAP3K5Q99683 1374 aa20.58■□□□□ 0.88
TRIM28-205ENST00000595028 GPR162Q16538 588 aa20.56■□□□□ 0.88
TRIM28-205ENST00000595028 CC2D1BQ5T0F9 858 aaKnown RBP20.56■□□□□ 0.88
TRIM28-205ENST00000595028 ITGB4P16144 1822 aa20.55■□□□□ 0.88
TRIM28-205ENST00000595028 CYP27B1O15528 508 aa20.55■□□□□ 0.88
TRIM28-205ENST00000595028 SYTL4Q96C24 671 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-205ENST00000595028 PRIM1P49642 420 aaKnown RBP20.54■□□□□ 0.88
TRIM28-205ENST00000595028 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.53■□□□□ 0.88
TRIM28-205ENST00000595028 SPG7Q9UQ90 795 aa20.53■□□□□ 0.88
TRIM28-205ENST00000595028 KDRP35968 1356 aa20.5■□□□□ 0.87
TRIM28-205ENST00000595028 MTHFSP49914 203 aa20.5■□□□□ 0.87
TRIM28-205ENST00000595028 COL3A1P02461 1466 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-205ENST00000595028 IL13P35225 146 aa20.49■□□□□ 0.87
TRIM28-205ENST00000595028 AEBP1Q8IUX7 1158 aa20.49■□□□□ 0.87
TRIM28-205ENST00000595028 NKX1-1Q15270 411 aaPredicted RBP20.48■□□□□ 0.87
TRIM28-205ENST00000595028 QSER1Q2KHR3 1735 aa20.47■□□□□ 0.87
TRIM28-205ENST00000595028 SLC27A3Q5K4L6 730 aa20.47■□□□□ 0.87
TRIM28-205ENST00000595028 PELP1Q8IZL8 1130 aaKnown RBP20.47■□□□□ 0.87
TRIM28-205ENST00000595028 LRRC4BQ9NT99 713 aa20.47■□□□□ 0.87
TRIM28-205ENST00000595028 TUBGCP6Q96RT7 1819 aa20.46■□□□□ 0.87
TRIM28-205ENST00000595028 PHKG2P15735 406 aa20.46■□□□□ 0.87
TRIM28-205ENST00000595028 CNGB1Q14028 1251 aaPredicted RBP20.46■□□□□ 0.87
TRIM28-205ENST00000595028 IFNL2Q8IZJ0 200 aa20.46■□□□□ 0.87
TRIM28-205ENST00000595028 KLHL34Q8N239 644 aa20.46■□□□□ 0.87
TRIM28-205ENST00000595028 C5P01031 1676 aa20.45■□□□□ 0.86
TRIM28-205ENST00000595028 ZNF827Q17R98 1081 aa20.44■□□□□ 0.86
TRIM28-205ENST00000595028 SULT6B1Q6IMI4 303 aa20.44■□□□□ 0.86
TRIM28-205ENST00000595028 TAF1LQ8IZX4 1826 aa20.43■□□□□ 0.86
TRIM28-205ENST00000595028 PLEKHO1Q53GL0 409 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-205ENST00000595028 MPRIPQ6WCQ1 1025 aa20.43■□□□□ 0.86
TRIM28-205ENST00000595028 PALLDQ8WX93 1383 aa20.43■□□□□ 0.86
TRIM28-205ENST00000595028 AMOTQ4VCS5 1084 aa20.42■□□□□ 0.86
TRIM28-205ENST00000595028 DIAPH1O60610 1272 aaKnown RBP20.41■□□□□ 0.86
TRIM28-205ENST00000595028 ZNF530Q6P9A1 599 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-205ENST00000595028 CCNL1Q9UK58 526 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-205ENST00000595028 KDM6AO15550 1401 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-205ENST00000595028 COL24A1Q17RW2 1714 aa20.4■□□□□ 0.86
TRIM28-205ENST00000595028 SCN11AQ9UI33 1791 aa20.39■□□□□ 0.86
TRIM28-205ENST00000595028 HSP90AB1P08238 724 aaKnown RBP20.39■□□□□ 0.85
TRIM28-205ENST00000595028 POLD1P28340 1107 aa20.39■□□□□ 0.85
TRIM28-205ENST00000595028 KCNQ4P56696 695 aa20.39■□□□□ 0.85
TRIM28-205ENST00000595028 NLGN2Q8NFZ4 835 aa20.39■□□□□ 0.85
TRIM28-205ENST00000595028 PIGBQ92521 554 aa20.39■□□□□ 0.85
TRIM28-205ENST00000595028 AKT1S1Q96B36 256 aa20.39■□□□□ 0.85
TRIM28-205ENST00000595028 TMOD3Q9NYL9 352 aa20.39■□□□□ 0.85
TRIM28-205ENST00000595028 SMARCC1Q92922 1105 aaPredicted RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms