RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 PRIM1P49642 420 aaKnown RBP24.5■■□□□ 1.51
SHKBP1-203ENST00000594298 MAP3K5Q99683 1374 aa24.5■■□□□ 1.51
SHKBP1-203ENST00000594298 RRS1Q15050 365 aaKnown RBP24.49■■□□□ 1.51
SHKBP1-203ENST00000594298 GGNBP2Q9H3C7 697 aa24.49■■□□□ 1.51
SHKBP1-203ENST00000594298 CGNL1Q0VF96 1302 aa24.49■■□□□ 1.51
SHKBP1-203ENST00000594298 NSD2O96028 1365 aa24.49■■□□□ 1.51
SHKBP1-203ENST00000594298 CDCA8Q53HL2 280 aa24.48■■□□□ 1.51
SHKBP1-203ENST00000594298 NBPF6Q5VWK0 638 aa24.48■■□□□ 1.51
SHKBP1-203ENST00000594298 SLC16A10Q8TF71 515 aa24.48■■□□□ 1.51
SHKBP1-203ENST00000594298 NBPF4Q96M43 638 aa24.48■■□□□ 1.51
SHKBP1-203ENST00000594298 SYTL4Q96C24 671 aaPredicted RBP24.47■■□□□ 1.51
SHKBP1-203ENST00000594298 SMG6Q86US8 1419 aaKnown RBP24.46■■□□□ 1.51
SHKBP1-203ENST00000594298 KIF24Q5T7B8 1368 aa24.45■■□□□ 1.5
SHKBP1-203ENST00000594298 SHANK3Q9BYB0 1731 aa24.45■■□□□ 1.5
SHKBP1-203ENST00000594298 INSRP06213 1382 aa24.44■■□□□ 1.5
SHKBP1-203ENST00000594298 PNPLA7Q6ZV29 1317 aa24.44■■□□□ 1.5
SHKBP1-203ENST00000594298 QSER1Q2KHR3 1735 aa24.44■■□□□ 1.5
SHKBP1-203ENST00000594298 DOT1LQ8TEK3 1739 aa24.44■■□□□ 1.5
SHKBP1-203ENST00000594298 RAPGEF4Q8WZA2 1011 aa24.43■■□□□ 1.5
SHKBP1-203ENST00000594298 TFCP2L1Q9NZI6 479 aa24.42■■□□□ 1.5
SHKBP1-203ENST00000594298 RGPD2P0DJD1 1756 aa24.42■■□□□ 1.5
SHKBP1-203ENST00000594298 FLT4P35916 1363 aa24.42■■□□□ 1.5
SHKBP1-203ENST00000594298 KCNQ4P56696 695 aa24.41■■□□□ 1.5
SHKBP1-203ENST00000594298 USHBP1Q8N6Y0 703 aa24.41■■□□□ 1.5
SHKBP1-203ENST00000594298 LY75O60449 1722 aa24.41■■□□□ 1.5
SHKBP1-203ENST00000594298 HSP90AB2PQ58FF8 381 aa24.4■■□□□ 1.5
SHKBP1-203ENST00000594298 CCNL1Q9UK58 526 aaPredicted RBP24.4■■□□□ 1.5
SHKBP1-203ENST00000594298 TATP17735 454 aaPredicted RBP24.39■■□□□ 1.49
SHKBP1-203ENST00000594298 POLD1P28340 1107 aa24.39■■□□□ 1.49
SHKBP1-203ENST00000594298 COL24A1Q17RW2 1714 aa24.38■■□□□ 1.49
SHKBP1-203ENST00000594298 KAT6BQ8WYB5 2073 aa24.38■■□□□ 1.49
SHKBP1-203ENST00000594298 CARD14Q9BXL6 1004 aa24.38■■□□□ 1.49
SHKBP1-203ENST00000594298 PCDH11XQ9BZA7 1347 aa24.37■■□□□ 1.49
SHKBP1-203ENST00000594298 PCDH11YQ9BZA8 1340 aa24.37■■□□□ 1.49
SHKBP1-203ENST00000594298 ZNF784Q8NCA9 323 aaPredicted RBP24.37■■□□□ 1.49
SHKBP1-203ENST00000594298 KIF20BQ96Q89 1820 aa24.35■■□□□ 1.49
SHKBP1-203ENST00000594298 UTRNP46939 3433 aa24.35■■□□□ 1.49
SHKBP1-203ENST00000594298 HMGB2P26583 209 aaKnown RBP24.34■■□□□ 1.49
SHKBP1-203ENST00000594298 NSD3Q9BZ95 1437 aa24.34■■□□□ 1.49
SHKBP1-203ENST00000594298 TUBGCP6Q96RT7 1819 aa24.32■■□□□ 1.48
SHKBP1-203ENST00000594298 NCAPD2Q15021 1401 aa24.32■■□□□ 1.48
SHKBP1-203ENST00000594298 CYP27B1O15528 508 aa24.31■■□□□ 1.48
SHKBP1-203ENST00000594298 EMILIN1Q9Y6C2 1016 aa24.31■■□□□ 1.48
SHKBP1-203ENST00000594298 GPR162Q16538 588 aa24.3■■□□□ 1.48
SHKBP1-203ENST00000594298 COL23A1Q86Y22 540 aaPredicted RBP24.3■■□□□ 1.48
SHKBP1-203ENST00000594298 PALLDQ8WX93 1383 aa24.29■■□□□ 1.48
SHKBP1-203ENST00000594298 KLHL34Q8N239 644 aa24.28■■□□□ 1.48
SHKBP1-203ENST00000594298 WASHC2AQ641Q2 1341 aa24.27■■□□□ 1.48
SHKBP1-203ENST00000594298 NKX1-1Q15270 411 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-203ENST00000594298 MPRIPQ6WCQ1 1025 aa24.26■■□□□ 1.47
SHKBP1-203ENST00000594298 MSH5O43196 834 aa24.25■■□□□ 1.47
SHKBP1-203ENST00000594298 FLAD1Q8NFF5 587 aa24.25■■□□□ 1.47
SHKBP1-203ENST00000594298 NLGN2Q8NFZ4 835 aa24.25■■□□□ 1.47
SHKBP1-203ENST00000594298 SMARCC1Q92922 1105 aaPredicted RBP24.25■■□□□ 1.47
SHKBP1-203ENST00000594298 PKD1L3Q7Z443 1732 aa24.24■■□□□ 1.47
SHKBP1-203ENST00000594298 ANKRD26Q9UPS8 1709 aa24.24■■□□□ 1.47
SHKBP1-203ENST00000594298 CHD4Q14839 1912 aa24.24■■□□□ 1.47
SHKBP1-203ENST00000594298 C5P01031 1676 aa24.24■■□□□ 1.47
SHKBP1-203ENST00000594298 PPM1GO15355 546 aaPredicted RBP24.23■■□□□ 1.47
SHKBP1-203ENST00000594298 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.23■■□□□ 1.47
SHKBP1-203ENST00000594298 SPG7Q9UQ90 795 aa24.23■■□□□ 1.47
SHKBP1-203ENST00000594298 TOGARAM1Q9Y4F4 1720 aa24.21■■□□□ 1.47
SHKBP1-203ENST00000594298 PIGBQ92521 554 aa24.21■■□□□ 1.47
SHKBP1-203ENST00000594298 EYA1Q99502 592 aa24.21■■□□□ 1.47
SHKBP1-203ENST00000594298 POLKQ9UBT6 870 aa24.21■■□□□ 1.47
SHKBP1-203ENST00000594298 MSL1Q68DK7 614 aa24.19■■□□□ 1.46
SHKBP1-203ENST00000594298 PELP1Q8IZL8 1130 aaKnown RBP24.19■■□□□ 1.46
SHKBP1-203ENST00000594298 EIF4G2P78344 907 aaKnown RBP eCLIP24.18■■□□□ 1.46
SHKBP1-203ENST00000594298 PLEKHG2Q9H7P9 1386 aa24.17■■□□□ 1.46
SHKBP1-203ENST00000594298 GRIN3BO60391 1043 aa24.17■■□□□ 1.46
SHKBP1-203ENST00000594298 AK7Q96M32 723 aa24.17■■□□□ 1.46
SHKBP1-203ENST00000594298 CD2APQ9Y5K6 639 aa24.17■■□□□ 1.46
SHKBP1-203ENST00000594298 C4BP0C0L5 1744 aa24.16■■□□□ 1.46
SHKBP1-203ENST00000594298 TAF1LQ8IZX4 1826 aa24.16■■□□□ 1.46
SHKBP1-203ENST00000594298 ITGB4P16144 1822 aa24.15■■□□□ 1.46
SHKBP1-203ENST00000594298 YBX3P16989 372 aaKnown RBP eCLIP24.15■■□□□ 1.46
SHKBP1-203ENST00000594298 IFNL2Q8IZJ0 200 aa24.15■■□□□ 1.46
SHKBP1-203ENST00000594298 LOC102724428A0A0B4J2F2 783 aa24.14■■□□□ 1.45
SHKBP1-203ENST00000594298 PHKG2P15735 406 aa24.14■■□□□ 1.45
SHKBP1-203ENST00000594298 SIK1P57059 783 aa24.14■■□□□ 1.45
SHKBP1-203ENST00000594298 C1QTNF8P60827 252 aa24.14■■□□□ 1.45
SHKBP1-203ENST00000594298 AMIGO3Q86WK7 504 aa24.14■■□□□ 1.45
SHKBP1-203ENST00000594298 EIF4A2Q14240 407 aaKnown RBP24.13■■□□□ 1.45
SHKBP1-203ENST00000594298 TMOD3Q9NYL9 352 aa24.13■■□□□ 1.45
SHKBP1-203ENST00000594298 SSFA2P28290 1259 aa24.12■■□□□ 1.45
SHKBP1-203ENST00000594298 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.11■■□□□ 1.45
SHKBP1-203ENST00000594298 MAP2P11137 1827 aaKnown RBP24.11■■□□□ 1.45
SHKBP1-203ENST00000594298 GOLGB1Q14789 3259 aaKnown RBP24.1■■□□□ 1.45
SHKBP1-203ENST00000594298 LINC00116Q8NCU8 138 aa24.1■■□□□ 1.45
SHKBP1-203ENST00000594298 POLR3GLQ9BT43 218 aa24.1■■□□□ 1.45
SHKBP1-203ENST00000594298 ASAP1Q9ULH1 1129 aa24.1■■□□□ 1.45
SHKBP1-203ENST00000594298 PHF14O94880 888 aa24.09■■□□□ 1.45
SHKBP1-203ENST00000594298 HSPA5P11021 654 aaKnown RBP24.09■■□□□ 1.45
SHKBP1-203ENST00000594298 TNNT2P45379 298 aaPredicted RBP24.09■■□□□ 1.45
SHKBP1-203ENST00000594298 IGSF1Q8N6C5 1336 aa24.09■■□□□ 1.45
SHKBP1-203ENST00000594298 UBR3Q6ZT12 1888 aa24.07■■□□□ 1.44
SHKBP1-203ENST00000594298 ITPK1Q13572 414 aa24.07■■□□□ 1.44
SHKBP1-203ENST00000594298 ATG3Q9NT62 314 aa24.07■■□□□ 1.44
SHKBP1-203ENST00000594298 GIGYF1O75420 1035 aaPredicted RBP24.06■■□□□ 1.44
SHKBP1-203ENST00000594298 ATP6V1AP38606 617 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms