RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SRCAPQ6ZRS2 3230 aa20.27■□□□□ 0.84
UPF1-202ENST00000594243 DIAPH1O60610 1272 aaKnown RBP20.27■□□□□ 0.84
UPF1-202ENST00000594243 BCL11BQ9C0K0 894 aaPredicted RBP20.27■□□□□ 0.84
UPF1-202ENST00000594243 SPG7Q9UQ90 795 aa20.26■□□□□ 0.83
UPF1-202ENST00000594243 PPP2R1AP30153 589 aa20.25■□□□□ 0.83
UPF1-202ENST00000594243 CFAP53Q96M91 514 aa20.25■□□□□ 0.83
UPF1-202ENST00000594243 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.25■□□□□ 0.833e-6■□□□□ 8.1
UPF1-202ENST00000594243 PCDH11XQ9BZA7 1347 aa20.25■□□□□ 0.83
UPF1-202ENST00000594243 PCDH11YQ9BZA8 1340 aa20.25■□□□□ 0.83
UPF1-202ENST00000594243 ZNF316A6NFI3 1004 aaPredicted RBP20.24■□□□□ 0.83
UPF1-202ENST00000594243 EN1Q05925 392 aaPredicted RBP20.24■□□□□ 0.83
UPF1-202ENST00000594243 PLEKHG2Q9H7P9 1386 aa20.23■□□□□ 0.83
UPF1-202ENST00000594243 SULT6B1Q6IMI4 303 aa20.23■□□□□ 0.83
UPF1-202ENST00000594243 ACSBG1Q96GR2 724 aa20.23■□□□□ 0.83
UPF1-202ENST00000594243 PLSCR1O15162 318 aa20.21■□□□□ 0.83
UPF1-202ENST00000594243 RALBP1Q15311 655 aa20.21■□□□□ 0.83
UPF1-202ENST00000594243 TNS1Q9HBL0 1735 aaKnown RBP20.21■□□□□ 0.83
UPF1-202ENST00000594243 PARD3Q8TEW0 1356 aa20.21■□□□□ 0.83
UPF1-202ENST00000594243 KCNQ2O43526 872 aa20.2■□□□□ 0.82
UPF1-202ENST00000594243 EZH2Q15910 746 aaKnown RBP20.2■□□□□ 0.82
UPF1-202ENST00000594243 AMOTQ4VCS5 1084 aa20.2■□□□□ 0.82
UPF1-202ENST00000594243 PLEKHO1Q53GL0 409 aaPredicted RBP20.2■□□□□ 0.82
UPF1-202ENST00000594243 CAMKK2Q96RR4 588 aa20.2■□□□□ 0.82
UPF1-202ENST00000594243 SBF2Q86WG5 1849 aa20.2■□□□□ 0.82
UPF1-202ENST00000594243 CYP27B1O15528 508 aa20.19■□□□□ 0.82
UPF1-202ENST00000594243 KDRP35968 1356 aa20.19■□□□□ 0.82
UPF1-202ENST00000594243 PTF1AQ7RTS3 328 aa20.18■□□□□ 0.82
UPF1-202ENST00000594243 AEBP1Q8IUX7 1158 aa20.18■□□□□ 0.82
UPF1-202ENST00000594243 IFNL2Q8IZJ0 200 aa20.18■□□□□ 0.82
UPF1-202ENST00000594243 NUDCQ9Y266 331 aa20.18■□□□□ 0.82
UPF1-202ENST00000594243 SHANK3Q9BYB0 1731 aa20.17■□□□□ 0.82
UPF1-202ENST00000594243 U2SURPO15042 1029 aaKnown RBP20.17■□□□□ 0.82
UPF1-202ENST00000594243 SYTL4Q96C24 671 aaPredicted RBP20.17■□□□□ 0.82
UPF1-202ENST00000594243 PKD1L3Q7Z443 1732 aa20.16■□□□□ 0.82
UPF1-202ENST00000594243 HMOX1P09601 288 aa20.16■□□□□ 0.82
UPF1-202ENST00000594243 PRIM1P49642 420 aaKnown RBP20.16■□□□□ 0.82
UPF1-202ENST00000594243 NKX1-1Q15270 411 aaPredicted RBP20.16■□□□□ 0.82
UPF1-202ENST00000594243 COL3A1P02461 1466 aaPredicted RBP20.16■□□□□ 0.82
UPF1-202ENST00000594243 PHKG2P15735 406 aa20.15■□□□□ 0.82
UPF1-202ENST00000594243 NHSQ6T4R5 1651 aa20.15■□□□□ 0.82
UPF1-202ENST00000594243 HSP90AB1P08238 724 aaKnown RBP20.13■□□□□ 0.81
UPF1-202ENST00000594243 C1orf141Q5JVX7 400 aa20.11■□□□□ 0.81
UPF1-202ENST00000594243 ZNF530Q6P9A1 599 aaPredicted RBP20.11■□□□□ 0.81
UPF1-202ENST00000594243 MYBBP1AQ9BQG0 1328 aaKnown RBP20.1■□□□□ 0.81
UPF1-202ENST00000594243 NBPF14Q5TI25 921 aa20.1■□□□□ 0.81
UPF1-202ENST00000594243 DCAF5Q96JK2 942 aa20.1■□□□□ 0.81
UPF1-202ENST00000594243 U2AF1L5P0DN76 240 aaPredicted RBP20.09■□□□□ 0.81
UPF1-202ENST00000594243 U2AF1Q01081 240 aaKnown RBP eCLIP20.09■□□□□ 0.81
UPF1-202ENST00000594243 TXNRD1Q16881 649 aa20.09■□□□□ 0.81
UPF1-202ENST00000594243 MPRIPQ6WCQ1 1025 aa20.09■□□□□ 0.81
UPF1-202ENST00000594243 RGPD3A6NKT7 1758 aaPredicted RBP20.08■□□□□ 0.81
UPF1-202ENST00000594243 RGPD4Q7Z3J3 1758 aa20.08■□□□□ 0.81
UPF1-202ENST00000594243 DOT1LQ8TEK3 1739 aa20.08■□□□□ 0.81
UPF1-202ENST00000594243 PROM2Q8N271 834 aa20.08■□□□□ 0.81
UPF1-202ENST00000594243 PRKRIP1Q9H875 184 aaPredicted RBP20.08■□□□□ 0.81
UPF1-202ENST00000594243 FCHSD2O94868 740 aa20.07■□□□□ 0.8
UPF1-202ENST00000594243 AKAP4Q5JQC9 854 aa20.07■□□□□ 0.8
UPF1-202ENST00000594243 BTAF1O14981 1849 aa20.06■□□□□ 0.8
UPF1-202ENST00000594243 ERVV-2B6SEH9 535 aa20.06■□□□□ 0.8
UPF1-202ENST00000594243 TMOD3Q9NYL9 352 aa20.06■□□□□ 0.8
UPF1-202ENST00000594243 MTHFSDQ2M296 383 aaKnown RBP20.05■□□□□ 0.8
UPF1-202ENST00000594243 RSPH6AQ9H0K4 717 aa20.05■□□□□ 0.8
UPF1-202ENST00000594243 RREB1Q92766 1687 aa20.05■□□□□ 0.8
UPF1-202ENST00000594243 PRKAR2BP31323 418 aa20.04■□□□□ 0.8
UPF1-202ENST00000594243 SLC27A3Q5K4L6 730 aa20.04■□□□□ 0.8
UPF1-202ENST00000594243 PIGBQ92521 554 aa20.04■□□□□ 0.8
UPF1-202ENST00000594243 SMARCC1Q92922 1105 aaPredicted RBP20.04■□□□□ 0.8
UPF1-202ENST00000594243 KAT6BQ8WYB5 2073 aa20.04■□□□□ 0.8
UPF1-202ENST00000594243 GAS2L2Q8NHY3 880 aa20.03■□□□□ 0.8
UPF1-202ENST00000594243 PNNQ9H307 717 aaKnown RBP20.03■□□□□ 0.8
UPF1-202ENST00000594243 NEFMP07197 916 aa20.02■□□□□ 0.8
UPF1-202ENST00000594243 HMGB2P26583 209 aaKnown RBP20.02■□□□□ 0.8
UPF1-202ENST00000594243 CABP4P57796 275 aa20.02■□□□□ 0.8
UPF1-202ENST00000594243 NUP188Q5SRE5 1749 aa20.01■□□□□ 0.79
UPF1-202ENST00000594243 TOGARAM1Q9Y4F4 1720 aa20■□□□□ 0.79
UPF1-202ENST00000594243 R3HDM1Q15032 1099 aaKnown RBP20■□□□□ 0.79
UPF1-202ENST00000594243 PHACTR3Q96KR7 559 aa20■□□□□ 0.79
UPF1-202ENST00000594243 PSDA5PKW4 1024 aaPredicted RBP19.99■□□□□ 0.79
UPF1-202ENST00000594243 LRRC4BQ9NT99 713 aa19.99■□□□□ 0.79
UPF1-202ENST00000594243 STK32BQ9NY57 414 aa19.99■□□□□ 0.79
UPF1-202ENST00000594243 KDM6AO15550 1401 aaPredicted RBP19.99■□□□□ 0.79
UPF1-202ENST00000594243 ITGB4P16144 1822 aa19.99■□□□□ 0.79
UPF1-202ENST00000594243 PALLDQ8WX93 1383 aa19.98■□□□□ 0.79
UPF1-202ENST00000594243 GNAT3A8MTJ3 354 aa19.98■□□□□ 0.79
UPF1-202ENST00000594243 NFATC2IPQ8NCF5 419 aa19.98■□□□□ 0.79
UPF1-202ENST00000594243 CCNL1Q9UK58 526 aaPredicted RBP19.98■□□□□ 0.79
UPF1-202ENST00000594243 RNMTO43148 476 aaKnown RBP19.97■□□□□ 0.79
UPF1-202ENST00000594243 ANP32CO43423 234 aa19.97■□□□□ 0.79
UPF1-202ENST00000594243 LGR6Q9HBX8 967 aa19.97■□□□□ 0.79
UPF1-202ENST00000594243 SLC15A2Q16348 729 aa19.96■□□□□ 0.79
UPF1-202ENST00000594243 ATG3Q9NT62 314 aa19.96■□□□□ 0.79
UPF1-202ENST00000594243 ASAP1Q9ULH1 1129 aa19.96■□□□□ 0.79
UPF1-202ENST00000594243 SLC52A2Q9HAB3 445 aa19.95■□□□□ 0.78
UPF1-202ENST00000594243 MAP3K5Q99683 1374 aa19.95■□□□□ 0.78
UPF1-202ENST00000594243 LY75O60449 1722 aa19.94■□□□□ 0.78
UPF1-202ENST00000594243 WDR43Q15061 677 aaKnown RBP eCLIP19.94■□□□□ 0.78
UPF1-202ENST00000594243 PLEKHF1Q96S99 279 aa19.94■□□□□ 0.78
UPF1-202ENST00000594243 ANO8Q9HCE9 1232 aaPredicted RBP19.94■□□□□ 0.78
UPF1-202ENST00000594243 LRP5O75197 1615 aa19.94■□□□□ 0.78
UPF1-202ENST00000594243 KCNQ4P56696 695 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms