RNA–Protein interactions for RNA: ENST00000594081.1

SMG9-202, Transcript of SMG9, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG9, Length 563 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG9-202ENST00000594081 POTEDQ86YR6 584 aa12.21□□□□□ -0.45
SMG9-202ENST00000594081 ROCK2O75116 1388 aaKnown RBP12.2□□□□□ -0.46
SMG9-202ENST00000594081 DDX54Q8TDD1 881 aaKnown RBP12.2□□□□□ -0.46
SMG9-202ENST00000594081 SYTL4Q96C24 671 aaPredicted RBP12.2□□□□□ -0.46
SMG9-202ENST00000594081 RGPD2P0DJD1 1756 aa12.2□□□□□ -0.46
SMG9-202ENST00000594081 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
SMG9-202ENST00000594081 EDC4Q6P2E9 1401 aaKnown RBP12.19□□□□□ -0.46
SMG9-202ENST00000594081 TAF1LQ8IZX4 1826 aa12.18□□□□□ -0.46
SMG9-202ENST00000594081 MEGF6O75095 1541 aa12.18□□□□□ -0.46
SMG9-202ENST00000594081 HSPA6P17066 643 aa12.18□□□□□ -0.46
SMG9-202ENST00000594081 MSL1Q68DK7 614 aa12.18□□□□□ -0.46
SMG9-202ENST00000594081 CCNL1Q9UK58 526 aaPredicted RBP12.18□□□□□ -0.46
SMG9-202ENST00000594081 TOGARAM1Q9Y4F4 1720 aa12.17□□□□□ -0.46
SMG9-202ENST00000594081 PRIM1P49642 420 aaKnown RBP12.17□□□□□ -0.46
SMG9-202ENST00000594081 COL23A1Q86Y22 540 aaPredicted RBP12.17□□□□□ -0.46
SMG9-202ENST00000594081 ZNF526Q8TF50 670 aaPredicted RBP12.16□□□□□ -0.46
SMG9-202ENST00000594081 L3MBTL2Q969R5 705 aa12.15□□□□□ -0.46
SMG9-202ENST00000594081 A0A1W2PP64 1363 aa12.15□□□□□ -0.46
SMG9-202ENST00000594081 USP47Q96K76 1375 aa12.15□□□□□ -0.46
SMG9-202ENST00000594081 CICQ96RK0 1608 aaPredicted RBP12.15□□□□□ -0.47
SMG9-202ENST00000594081 C4BP0C0L5 1744 aa12.14□□□□□ -0.47
SMG9-202ENST00000594081 LTV1Q96GA3 475 aaPredicted RBP12.14□□□□□ -0.47
SMG9-202ENST00000594081 UBR3Q6ZT12 1888 aa12.13□□□□□ -0.47
SMG9-202ENST00000594081 HDGFL2Q7Z4V5 671 aaPredicted RBP12.13□□□□□ -0.47
SMG9-202ENST00000594081 IP6K1Q92551 441 aa12.13□□□□□ -0.47
SMG9-202ENST00000594081 CD2APQ9Y5K6 639 aa12.13□□□□□ -0.47
SMG9-202ENST00000594081 TMC1Q8TDI8 760 aa12.12□□□□□ -0.47
SMG9-202ENST00000594081 ZCRB1Q8TBF4 217 aaKnown RBP12.11□□□□□ -0.47
SMG9-202ENST00000594081 MAP3K19Q56UN5 1328 aa12.11□□□□□ -0.47
SMG9-202ENST00000594081 IGSF1Q8N6C5 1336 aa12.11□□□□□ -0.47
SMG9-202ENST00000594081 RTL1A6NKG5 1358 aa12.1□□□□□ -0.47
SMG9-202ENST00000594081 PALLDQ8WX93 1383 aa12.1□□□□□ -0.47
SMG9-202ENST00000594081 ITGB4P16144 1822 aa12.1□□□□□ -0.47
SMG9-202ENST00000594081 HOXC9P31274 260 aa12.1□□□□□ -0.47
SMG9-202ENST00000594081 SLC12A5Q9H2X9 1139 aa12.1□□□□□ -0.47
SMG9-202ENST00000594081 WWC3Q9ULE0 1092 aa12.1□□□□□ -0.47
SMG9-202ENST00000594081 KIAA1551Q9HCM1 1747 aa12.09□□□□□ -0.47
SMG9-202ENST00000594081 KIF3CO14782 793 aa12.09□□□□□ -0.47
SMG9-202ENST00000594081 PKD1L3Q7Z443 1732 aa12.08□□□□□ -0.47
SMG9-202ENST00000594081 WDR90Q96KV7 1748 aa12.08□□□□□ -0.47
SMG9-202ENST00000594081 FLAD1Q8NFF5 587 aa12.08□□□□□ -0.48
SMG9-202ENST00000594081 TERF2IPQ9NYB0 399 aa12.08□□□□□ -0.48
SMG9-202ENST00000594081 KIF13BQ9NQT8 1826 aa12.07□□□□□ -0.48
SMG9-202ENST00000594081 AMPHP49418 695 aa12.07□□□□□ -0.48
SMG9-202ENST00000594081 SMG6Q86US8 1419 aaKnown RBP12.07□□□□□ -0.48
SMG9-202ENST00000594081 NSD3Q9BZ95 1437 aa12.07□□□□□ -0.48
SMG9-202ENST00000594081 CGNL1Q0VF96 1302 aa12.07□□□□□ -0.48
SMG9-202ENST00000594081 MAP2P11137 1827 aaKnown RBP12.07□□□□□ -0.48
SMG9-202ENST00000594081 APLP1P51693 650 aa12.06□□□□□ -0.48
SMG9-202ENST00000594081 AMIGO3Q86WK7 504 aa12.06□□□□□ -0.48
SMG9-202ENST00000594081 USHBP1Q8N6Y0 703 aa12.06□□□□□ -0.48
SMG9-202ENST00000594081 AK7Q96M32 723 aa12.06□□□□□ -0.48
SMG9-202ENST00000594081 PCDH11XQ9BZA7 1347 aa12.06□□□□□ -0.48
SMG9-202ENST00000594081 PCDH11YQ9BZA8 1340 aa12.06□□□□□ -0.48
SMG9-202ENST00000594081 N4BP2Q86UW6 1770 aaPredicted RBP12.05□□□□□ -0.48
SMG9-202ENST00000594081 PHF14O94880 888 aa12.05□□□□□ -0.48
SMG9-202ENST00000594081 FBLN1P23142 703 aa12.05□□□□□ -0.48
SMG9-202ENST00000594081 COG3Q96JB2 828 aa12.05□□□□□ -0.48
SMG9-202ENST00000594081 SIN3AQ96ST3 1273 aa12.05□□□□□ -0.48
SMG9-202ENST00000594081 PXDNLA1KZ92 1463 aa12.05□□□□□ -0.48
SMG9-202ENST00000594081 KIF20BQ96Q89 1820 aa12.04□□□□□ -0.48
SMG9-202ENST00000594081 HMGB2P26583 209 aaKnown RBP12.04□□□□□ -0.48
SMG9-202ENST00000594081 NBPF6Q5VWK0 638 aa12.04□□□□□ -0.48
SMG9-202ENST00000594081 RAPGEF4Q8WZA2 1011 aa12.04□□□□□ -0.48
SMG9-202ENST00000594081 NBPF4Q96M43 638 aa12.04□□□□□ -0.48
SMG9-202ENST00000594081 CARD11Q9BXL7 1154 aa12.04□□□□□ -0.48
SMG9-202ENST00000594081 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.03□□□□□ -0.48
SMG9-202ENST00000594081 MPRIPQ6WCQ1 1025 aa12.03□□□□□ -0.48
SMG9-202ENST00000594081 SMIM5Q71RC9 77 aa12.03□□□□□ -0.48
SMG9-202ENST00000594081 BRCA1P38398 1863 aaKnown RBP12.03□□□□□ -0.48
SMG9-202ENST00000594081 TATP17735 454 aaPredicted RBP12.02□□□□□ -0.49
SMG9-202ENST00000594081 NEUROD1Q13562 356 aa12.02□□□□□ -0.49
SMG9-202ENST00000594081 RRS1Q15050 365 aaKnown RBP12.02□□□□□ -0.49
SMG9-202ENST00000594081 TOMM70O94826 608 aa12.01□□□□□ -0.49
SMG9-202ENST00000594081 SSFA2P28290 1259 aa12.01□□□□□ -0.49
SMG9-202ENST00000594081 DNAJC5GQ8N7S2 189 aa12.01□□□□□ -0.49
SMG9-202ENST00000594081 SMARCC1Q92922 1105 aaPredicted RBP12.01□□□□□ -0.49
SMG9-202ENST00000594081 PUS7Q96PZ0 661 aaKnown RBP12.01□□□□□ -0.49
SMG9-202ENST00000594081 C10orf71Q711Q0 1435 aa12.01□□□□□ -0.49
SMG9-202ENST00000594081 CYP27B1O15528 508 aa12□□□□□ -0.49
SMG9-202ENST00000594081 ANKRD26Q9UPS8 1709 aa12□□□□□ -0.49
SMG9-202ENST00000594081 LINC00116Q8NCU8 138 aa11.99□□□□□ -0.49
SMG9-202ENST00000594081 NMRK2Q9NPI5 230 aa11.99□□□□□ -0.49
SMG9-202ENST00000594081 INSRP06213 1382 aa11.99□□□□□ -0.49
SMG9-202ENST00000594081 FLT4P35916 1363 aa11.99□□□□□ -0.49
SMG9-202ENST00000594081 C4AP0C0L4 1744 aa11.99□□□□□ -0.49
SMG9-202ENST00000594081 ARFGEF1Q9Y6D6 1849 aa11.99□□□□□ -0.49
SMG9-202ENST00000594081 TNRC6CQ9HCJ0 1690 aaKnown RBP11.98□□□□□ -0.49
SMG9-202ENST00000594081 NCAPD2Q15021 1401 aa11.98□□□□□ -0.49
SMG9-202ENST00000594081 GNPATO15228 680 aa11.98□□□□□ -0.49
SMG9-202ENST00000594081 COL5A3P25940 1745 aaPredicted RBP11.97□□□□□ -0.49
SMG9-202ENST00000594081 PLEKHG2Q9H7P9 1386 aa11.97□□□□□ -0.49
SMG9-202ENST00000594081 LOC102724428A0A0B4J2F2 783 aa11.97□□□□□ -0.49
SMG9-202ENST00000594081 MMP10P09238 476 aa11.97□□□□□ -0.49
SMG9-202ENST00000594081 SIK1P57059 783 aa11.97□□□□□ -0.49
SMG9-202ENST00000594081 PIGBQ92521 554 aa11.97□□□□□ -0.49
SMG9-202ENST00000594081 BCS1LQ9Y276 419 aa11.97□□□□□ -0.49
SMG9-202ENST00000594081 ZNF831Q5JPB2 1677 aa11.97□□□□□ -0.49
SMG9-202ENST00000594081 KIF24Q5T7B8 1368 aa11.96□□□□□ -0.49
SMG9-202ENST00000594081 HSP90AB2PQ58FF8 381 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms