RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 FANCIQ9NVI1 1328 aa17.17■□□□□ 0.34
VRK3-205ENST00000593919 VIRMAQ69YN4 1812 aaKnown RBP17.17■□□□□ 0.34
VRK3-205ENST00000593919 COL14A1Q05707 1796 aaKnown RBP17.17■□□□□ 0.34
VRK3-205ENST00000593919 B4GALNT3Q6L9W6 998 aa17.17■□□□□ 0.34
VRK3-205ENST00000593919 CALD1Q05682 793 aaKnown RBP17.16■□□□□ 0.34
VRK3-205ENST00000593919 MCM10Q7L590 875 aa17.15■□□□□ 0.34
VRK3-205ENST00000593919 ARXQ96QS3 562 aa17.15■□□□□ 0.34
VRK3-205ENST00000593919 LRRC37A3O60309 1634 aa17.15■□□□□ 0.34
VRK3-205ENST00000593919 WDR17Q8IZU2 1322 aa17.15■□□□□ 0.34
VRK3-205ENST00000593919 MAP3K5Q99683 1374 aa17.14■□□□□ 0.33
VRK3-205ENST00000593919 RTF1Q92541 710 aaKnown RBP17.13■□□□□ 0.33
VRK3-205ENST00000593919 IFT57Q9NWB7 429 aa17.13■□□□□ 0.33
VRK3-205ENST00000593919 LAS1LQ9Y4W2 734 aaKnown RBP17.13■□□□□ 0.33
VRK3-205ENST00000593919 GNAT3A8MTJ3 354 aa17.13■□□□□ 0.33
VRK3-205ENST00000593919 MEGF6O75095 1541 aa17.13■□□□□ 0.33
VRK3-205ENST00000593919 ZNF853P0CG23 659 aa17.12■□□□□ 0.33
VRK3-205ENST00000593919 RRP1P56182 461 aaKnown RBP17.12■□□□□ 0.33
VRK3-205ENST00000593919 GNAI1P63096 354 aa17.12■□□□□ 0.33
VRK3-205ENST00000593919 PLCH1Q4KWH8 1693 aa17.12■□□□□ 0.33
VRK3-205ENST00000593919 CFAP44Q96MT7 982 aa17.12■□□□□ 0.33
VRK3-205ENST00000593919 PLEKHO1Q53GL0 409 aaPredicted RBP17.11■□□□□ 0.33
VRK3-205ENST00000593919 RAPGEF4Q8WZA2 1011 aa17.11■□□□□ 0.33
VRK3-205ENST00000593919 CRB1P82279 1406 aa17.11■□□□□ 0.33
VRK3-205ENST00000593919 HTATSF1O43719 755 aaKnown RBP17.11■□□□□ 0.33
VRK3-205ENST00000593919 AMOTQ4VCS5 1084 aa17.11■□□□□ 0.33
VRK3-205ENST00000593919 TOM1L2Q6ZVM7 507 aa17.11■□□□□ 0.33
VRK3-205ENST00000593919 STRN4Q9NRL3 753 aa17.11■□□□□ 0.33
VRK3-205ENST00000593919 PKD1L3Q7Z443 1732 aa17.11■□□□□ 0.33
VRK3-205ENST00000593919 PARP4Q9UKK3 1724 aaKnown RBP17.1■□□□□ 0.33
VRK3-205ENST00000593919 EXOSC9Q06265 439 aaKnown RBP17.1■□□□□ 0.33
VRK3-205ENST00000593919 MBIPQ9NS73 344 aa17.1■□□□□ 0.33
VRK3-205ENST00000593919 BTG4Q9NY30 223 aa17.1■□□□□ 0.33
VRK3-205ENST00000593919 ZNF530Q6P9A1 599 aaPredicted RBP17.09■□□□□ 0.33
VRK3-205ENST00000593919 EVA1CP58658 441 aa17.09■□□□□ 0.33
VRK3-205ENST00000593919 LARP1Q6PKG0 1096 aaKnown RBP17.09■□□□□ 0.33
VRK3-205ENST00000593919 ADAMTS2O95450 1211 aa17.08■□□□□ 0.33
VRK3-205ENST00000593919 TATP17735 454 aaPredicted RBP17.08■□□□□ 0.33
VRK3-205ENST00000593919 PLEKHG2Q9H7P9 1386 aa17.08■□□□□ 0.32
VRK3-205ENST00000593919 AKAP4Q5JQC9 854 aa17.08■□□□□ 0.32
VRK3-205ENST00000593919 IL17REQ8NFR9 667 aa17.08■□□□□ 0.32
VRK3-205ENST00000593919 CARD10Q9BWT7 1032 aa17.08■□□□□ 0.32
VRK3-205ENST00000593919 JCADQ9P266 1359 aa17.07■□□□□ 0.32
VRK3-205ENST00000593919 NUTM2BA6NNL0 878 aaPredicted RBP17.07■□□□□ 0.32
VRK3-205ENST00000593919 NUTM2EB1AL46 878 aaPredicted RBP17.07■□□□□ 0.32
VRK3-205ENST00000593919 CT47B1P0C2W7 299 aaPredicted RBP17.07■□□□□ 0.32
VRK3-205ENST00000593919 NUTM2AQ8IVF1 878 aaPredicted RBP17.07■□□□□ 0.32
VRK3-205ENST00000593919 NRAPQ86VF7 1730 aa17.07■□□□□ 0.32
VRK3-205ENST00000593919 CEMIPQ8WUJ3 1361 aa17.07■□□□□ 0.32
VRK3-205ENST00000593919 CHL1O00533 1208 aa17.06■□□□□ 0.32
VRK3-205ENST00000593919 PLIN1O60240 522 aa17.06■□□□□ 0.32
VRK3-205ENST00000593919 BCAR3O75815 825 aa17.06■□□□□ 0.32
VRK3-205ENST00000593919 C1orf141Q5JVX7 400 aa17.06■□□□□ 0.32
VRK3-205ENST00000593919 RBM19Q9Y4C8 960 aaKnown RBP17.06■□□□□ 0.32
VRK3-205ENST00000593919 OVOS2A0A0G2JMS6 1433 aa17.06■□□□□ 0.32
VRK3-205ENST00000593919 RARSP54136 660 aaKnown RBP17.06■□□□□ 0.32
VRK3-205ENST00000593919 ADAMTS7Q9UKP4 1686 aa17.05■□□□□ 0.32
VRK3-205ENST00000593919 SCN11AQ9UI33 1791 aa17.05■□□□□ 0.32
VRK3-205ENST00000593919 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.05■□□□□ 0.321e-7■■□□□ 12.1
VRK3-205ENST00000593919 NWD2Q9ULI1 1742 aa17.04■□□□□ 0.32
VRK3-205ENST00000593919 CCDC136Q96JN2 1154 aa17.04■□□□□ 0.32
VRK3-205ENST00000593919 LGR6Q9HBX8 967 aa17.04■□□□□ 0.32
VRK3-205ENST00000593919 SPG7Q9UQ90 795 aa17.04■□□□□ 0.32
VRK3-205ENST00000593919 SHANK3Q9BYB0 1731 aa17.03■□□□□ 0.32
VRK3-205ENST00000593919 MPRIPQ6WCQ1 1025 aa17.03■□□□□ 0.32
VRK3-205ENST00000593919 MIS18AQ9NYP9 233 aa17.03■□□□□ 0.32
VRK3-205ENST00000593919 USP35Q9P2H5 1018 aa17.03■□□□□ 0.32
VRK3-205ENST00000593919 SIPA1L3O60292 1781 aaPredicted RBP17.03■□□□□ 0.32
VRK3-205ENST00000593919 TSPYL6Q8N831 410 aa17.02■□□□□ 0.32
VRK3-205ENST00000593919 BCL2L13Q9BXK5 485 aa17.02■□□□□ 0.32
VRK3-205ENST00000593919 TSPYL4Q9UJ04 414 aa17.02■□□□□ 0.32
VRK3-205ENST00000593919 WNK3Q9BYP7 1800 aa17.02■□□□□ 0.32
VRK3-205ENST00000593919 IL2RBP14784 551 aa17.02■□□□□ 0.31
VRK3-205ENST00000593919 HSPA1LP34931 641 aa17.01■□□□□ 0.31
VRK3-205ENST00000593919 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.01■□□□□ 0.31
VRK3-205ENST00000593919 C8orf58Q8NAV2 365 aa17.01■□□□□ 0.31
VRK3-205ENST00000593919 KDM3BQ7LBC6 1761 aa17.01■□□□□ 0.31
VRK3-205ENST00000593919 RNMTO43148 476 aaKnown RBP17■□□□□ 0.31
VRK3-205ENST00000593919 PHKG2P15735 406 aa17■□□□□ 0.31
VRK3-205ENST00000593919 TAF7Q15545 349 aaPredicted RBP17■□□□□ 0.31
VRK3-205ENST00000593919 SLIT2O94813 1529 aa17■□□□□ 0.31
VRK3-205ENST00000593919 KDM6AO15550 1401 aaPredicted RBP17■□□□□ 0.31
VRK3-205ENST00000593919 ELL2O00472 640 aaPredicted RBP17■□□□□ 0.31
VRK3-205ENST00000593919 CYP27B1O15528 508 aa17■□□□□ 0.31
VRK3-205ENST00000593919 VAMP4O75379 141 aa17■□□□□ 0.31
VRK3-205ENST00000593919 TWISTNBQ3B726 338 aaPredicted RBP17■□□□□ 0.31
VRK3-205ENST00000593919 KRT24Q2M2I5 525 aa16.99■□□□□ 0.31
VRK3-205ENST00000593919 IFNL2Q8IZJ0 200 aa16.99■□□□□ 0.31
VRK3-205ENST00000593919 SSH1Q8WYL5 1049 aa16.99■□□□□ 0.31
VRK3-205ENST00000593919 LRP6O75581 1613 aa16.99■□□□□ 0.31
VRK3-205ENST00000593919 TEFQ10587 303 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 C20orf194Q5TEA3 1177 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 EXOC6Q8TAG9 804 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 SMC4Q9NTJ3 1288 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 SPATA31A6Q5VVP1 1343 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 ZCRB1Q8TBF4 217 aaKnown RBP16.98■□□□□ 0.31
VRK3-205ENST00000593919 ZNF428Q96B54 188 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 BABAM1Q9NWV8 329 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 PCDH11XQ9BZA7 1347 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 PCDH11YQ9BZA8 1340 aa16.98■□□□□ 0.31
VRK3-205ENST00000593919 FRAT1Q92837 279 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms