RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NUP188Q5SRE5 1749 aa20.93■□□□□ 0.94
TRIM28-203ENST00000593582 RGPD2P0DJD1 1756 aa20.93■□□□□ 0.94
TRIM28-203ENST00000593582 TATP17735 454 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-203ENST00000593582 NHSQ6T4R5 1651 aa20.92■□□□□ 0.94
TRIM28-203ENST00000593582 PROM2Q8N271 834 aa20.91■□□□□ 0.94
TRIM28-203ENST00000593582 ANKRD26Q9UPS8 1709 aa20.9■□□□□ 0.94
TRIM28-203ENST00000593582 TXNRD1Q16881 649 aa20.9■□□□□ 0.94
TRIM28-203ENST00000593582 MORC1Q86VD1 984 aa20.9■□□□□ 0.94
TRIM28-203ENST00000593582 SYTL4Q96C24 671 aaPredicted RBP20.88■□□□□ 0.93
TRIM28-203ENST00000593582 MAP2P11137 1827 aaKnown RBP20.88■□□□□ 0.93
TRIM28-203ENST00000593582 LRP5O75197 1615 aa20.87■□□□□ 0.93
TRIM28-203ENST00000593582 PCDH11XQ9BZA7 1347 aa20.86■□□□□ 0.93
TRIM28-203ENST00000593582 PCDH11YQ9BZA8 1340 aa20.86■□□□□ 0.93
TRIM28-203ENST00000593582 PRIM1P49642 420 aaKnown RBP20.86■□□□□ 0.93
TRIM28-203ENST00000593582 EIF4A2Q14240 407 aaKnown RBP20.85■□□□□ 0.93
TRIM28-203ENST00000593582 EYA1Q99502 592 aa20.85■□□□□ 0.93
TRIM28-203ENST00000593582 ANO8Q9HCE9 1232 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-203ENST00000593582 AMER1Q5JTC6 1135 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-203ENST00000593582 NCAPD2Q15021 1401 aa20.84■□□□□ 0.93
TRIM28-203ENST00000593582 STK32BQ9NY57 414 aa20.83■□□□□ 0.93
TRIM28-203ENST00000593582 SHANK3Q9BYB0 1731 aa20.83■□□□□ 0.92
TRIM28-203ENST00000593582 BTAF1O14981 1849 aa20.83■□□□□ 0.92
TRIM28-203ENST00000593582 KAT6BQ8WYB5 2073 aa20.82■□□□□ 0.92
TRIM28-203ENST00000593582 SPG7Q9UQ90 795 aa20.82■□□□□ 0.92
TRIM28-203ENST00000593582 CYP27B1O15528 508 aa20.8■□□□□ 0.92
TRIM28-203ENST00000593582 PER1O15534 1290 aaPredicted RBP20.8■□□□□ 0.92
TRIM28-203ENST00000593582 SLC15A2Q16348 729 aa20.8■□□□□ 0.92
TRIM28-203ENST00000593582 DOT1LQ8TEK3 1739 aa20.79■□□□□ 0.92
TRIM28-203ENST00000593582 SLC27A3Q5K4L6 730 aa20.79■□□□□ 0.92
TRIM28-203ENST00000593582 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.79■□□□□ 0.92
TRIM28-203ENST00000593582 IGSF1Q8N6C5 1336 aa20.78■□□□□ 0.92
TRIM28-203ENST00000593582 SPON1Q9HCB6 807 aa20.77■□□□□ 0.92
TRIM28-203ENST00000593582 LRRC4BQ9NT99 713 aa20.77■□□□□ 0.92
TRIM28-203ENST00000593582 CC2D1BQ5T0F9 858 aaKnown RBP20.76■□□□□ 0.91
TRIM28-203ENST00000593582 PKD1L3Q7Z443 1732 aa20.75■□□□□ 0.91
TRIM28-203ENST00000593582 PLEKHG2Q9H7P9 1386 aa20.75■□□□□ 0.91
TRIM28-203ENST00000593582 NKX1-1Q15270 411 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-203ENST00000593582 MPRIPQ6WCQ1 1025 aa20.74■□□□□ 0.91
TRIM28-203ENST00000593582 IFNL2Q8IZJ0 200 aa20.73■□□□□ 0.91
TRIM28-203ENST00000593582 PDGFDQ9GZP0 370 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-203ENST00000593582 MTHFSP49914 203 aa20.72■□□□□ 0.91
TRIM28-203ENST00000593582 CCNL1Q9UK58 526 aaPredicted RBP20.72■□□□□ 0.91
TRIM28-203ENST00000593582 NPC1L1Q9UHC9 1359 aa20.72■□□□□ 0.91
TRIM28-203ENST00000593582 PAPPAQ13219 1627 aa20.71■□□□□ 0.91
TRIM28-203ENST00000593582 ZBTB7AO95365 584 aa20.71■□□□□ 0.91
TRIM28-203ENST00000593582 PHKG2P15735 406 aa20.71■□□□□ 0.91
TRIM28-203ENST00000593582 ZNF827Q17R98 1081 aa20.71■□□□□ 0.91
TRIM28-203ENST00000593582 PPP1R1BQ9UD71 204 aaPredicted RBP20.71■□□□□ 0.91
TRIM28-203ENST00000593582 IL13P35225 146 aa20.7■□□□□ 0.9
TRIM28-203ENST00000593582 KCNQ4P56696 695 aa20.7■□□□□ 0.9
TRIM28-203ENST00000593582 CNGB1Q14028 1251 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-203ENST00000593582 PLEKHO1Q53GL0 409 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-203ENST00000593582 CASZ1Q86V15 1759 aa20.69■□□□□ 0.9
TRIM28-203ENST00000593582 AMOTQ4VCS5 1084 aa20.69■□□□□ 0.9
TRIM28-203ENST00000593582 SULT6B1Q6IMI4 303 aa20.69■□□□□ 0.9
TRIM28-203ENST00000593582 AKT1S1Q96B36 256 aa20.69■□□□□ 0.9
TRIM28-203ENST00000593582 HMGB2P26583 209 aaKnown RBP20.68■□□□□ 0.9
TRIM28-203ENST00000593582 AEBP1Q8IUX7 1158 aa20.68■□□□□ 0.9
TRIM28-203ENST00000593582 SMARCC1Q92922 1105 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-203ENST00000593582 PALLDQ8WX93 1383 aa20.68■□□□□ 0.9
TRIM28-203ENST00000593582 PIGBQ92521 554 aa20.67■□□□□ 0.9
TRIM28-203ENST00000593582 MTFR1LQ9H019 292 aa20.67■□□□□ 0.9
TRIM28-203ENST00000593582 TMOD3Q9NYL9 352 aa20.67■□□□□ 0.9
TRIM28-203ENST00000593582 TFCP2L1Q9NZI6 479 aa20.67■□□□□ 0.9
TRIM28-203ENST00000593582 ATF5Q9Y2D1 282 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-203ENST00000593582 LY75O60449 1722 aa20.67■□□□□ 0.9
TRIM28-203ENST00000593582 HSP90AB1P08238 724 aaKnown RBP20.66■□□□□ 0.9
TRIM28-203ENST00000593582 KDRP35968 1356 aa20.66■□□□□ 0.9
TRIM28-203ENST00000593582 TOGARAM1Q9Y4F4 1720 aa20.66■□□□□ 0.9
TRIM28-203ENST00000593582 ZNF530Q6P9A1 599 aaPredicted RBP20.65■□□□□ 0.9
TRIM28-203ENST00000593582 DIAPH1O60610 1272 aaKnown RBP20.64■□□□□ 0.89
TRIM28-203ENST00000593582 DCAF5Q96JK2 942 aa20.64■□□□□ 0.89
TRIM28-203ENST00000593582 PTGER2P43116 358 aa20.63■□□□□ 0.89
TRIM28-203ENST00000593582 C1orf141Q5JVX7 400 aa20.63■□□□□ 0.89
TRIM28-203ENST00000593582 ERVV-2B6SEH9 535 aa20.62■□□□□ 0.89
TRIM28-203ENST00000593582 ITGB4P16144 1822 aa20.62■□□□□ 0.89
TRIM28-203ENST00000593582 PNPLA7Q6ZV29 1317 aa20.61■□□□□ 0.89
TRIM28-203ENST00000593582 SLC16A10Q8TF71 515 aa20.61■□□□□ 0.89
TRIM28-203ENST00000593582 HMOX1P09601 288 aa20.6■□□□□ 0.89
TRIM28-203ENST00000593582 ASAP1Q9ULH1 1129 aa20.6■□□□□ 0.89
TRIM28-203ENST00000593582 LOC102724428A0A0B4J2F2 783 aa20.58■□□□□ 0.89
TRIM28-203ENST00000593582 SIK1P57059 783 aa20.58■□□□□ 0.89
TRIM28-203ENST00000593582 CABP4P57796 275 aa20.58■□□□□ 0.89
TRIM28-203ENST00000593582 QSER1Q2KHR3 1735 aa20.57■□□□□ 0.88
TRIM28-203ENST00000593582 SGIP1Q9BQI5 828 aa20.57■□□□□ 0.88
TRIM28-203ENST00000593582 ATG3Q9NT62 314 aa20.57■□□□□ 0.88
TRIM28-203ENST00000593582 KDM6AO15550 1401 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-203ENST00000593582 MSH5O43196 834 aa20.56■□□□□ 0.88
TRIM28-203ENST00000593582 CFAP53Q96M91 514 aa20.56■□□□□ 0.88
TRIM28-203ENST00000593582 C5P01031 1676 aa20.56■□□□□ 0.88
TRIM28-203ENST00000593582 U2SURPO15042 1029 aaKnown RBP20.55■□□□□ 0.88
TRIM28-203ENST00000593582 AKAP4Q5JQC9 854 aa20.55■□□□□ 0.88
TRIM28-203ENST00000593582 FLAD1Q8NFF5 587 aa20.55■□□□□ 0.88
TRIM28-203ENST00000593582 AK7Q96M32 723 aa20.55■□□□□ 0.88
TRIM28-203ENST00000593582 POLD1P28340 1107 aa20.54■□□□□ 0.88
TRIM28-203ENST00000593582 ATP6V1AP38606 617 aa20.54■□□□□ 0.88
TRIM28-203ENST00000593582 COL23A1Q86Y22 540 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-203ENST00000593582 ARXQ96QS3 562 aa20.54■□□□□ 0.88
TRIM28-203ENST00000593582 COL3A1P02461 1466 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-203ENST00000593582 DCAF8L1A6NGE4 600 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms