RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 LILRA1O75019 489 aa9.54□□□□□ -0.88
SMAD4-216ENST00000593223 UPP2O95045 317 aa9.54□□□□□ -0.88
SMAD4-216ENST00000593223 RFX1P22670 979 aa9.54□□□□□ -0.88
SMAD4-216ENST00000593223 ERVK-9P63128 1117 aa9.54□□□□□ -0.88
SMAD4-216ENST00000593223 ZNF775Q96BV0 537 aaPredicted RBP9.54□□□□□ -0.88
SMAD4-216ENST00000593223 NOD1Q9Y239 953 aa9.54□□□□□ -0.88
SMAD4-216ENST00000593223 MAFBQ9Y5Q3 323 aaPredicted RBP9.54□□□□□ -0.88
SMAD4-216ENST00000593223 ADD1P35611 737 aaKnown RBP9.53□□□□□ -0.88
SMAD4-216ENST00000593223 SMCPP49901 116 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-216ENST00000593223 CYP2U1Q7Z449 544 aa9.52□□□□□ -0.89
SMAD4-216ENST00000593223 PLEKHM2Q8IWE5 1019 aa9.52□□□□□ -0.89
SMAD4-216ENST00000593223 CRIPAKQ8N1N5 446 aa9.52□□□□□ -0.89
SMAD4-216ENST00000593223 AAASQ9NRG9 546 aa9.52□□□□□ -0.89
SMAD4-216ENST00000593223 ADH1AP07327 375 aa9.51□□□□□ -0.89
SMAD4-216ENST00000593223 RELBQ01201 579 aa9.51□□□□□ -0.89
SMAD4-216ENST00000593223 Q6ZVU0 165 aa9.51□□□□□ -0.89
SMAD4-216ENST00000593223 MEIOBQ8N635 442 aa9.51□□□□□ -0.89
SMAD4-216ENST00000593223 AGBL1Q96MI9 1066 aa9.51□□□□□ -0.89
SMAD4-216ENST00000593223 ATP5J2-PTCD1G3V325 749 aa9.5□□□□□ -0.89
SMAD4-216ENST00000593223 BMP1P13497 986 aa9.5□□□□□ -0.89
SMAD4-216ENST00000593223 SCARF1Q14162 830 aa9.5□□□□□ -0.89
SMAD4-216ENST00000593223 CFAP70Q5T0N1 1121 aa9.5□□□□□ -0.89
SMAD4-216ENST00000593223 C6orf118Q5T5N4 469 aa9.5□□□□□ -0.89
SMAD4-216ENST00000593223 TSEN34Q9BSV6 310 aaKnown RBP9.5□□□□□ -0.89
SMAD4-216ENST00000593223 OSBPL3Q9H4L5 887 aa9.5□□□□□ -0.89
SMAD4-216ENST00000593223 MKRN1Q9UHC7 482 aaKnown RBP9.5□□□□□ -0.89
SMAD4-216ENST00000593223 BMP2P12643 396 aa9.49□□□□□ -0.89
SMAD4-216ENST00000593223 PSME1Q06323 249 aa9.49□□□□□ -0.89
SMAD4-216ENST00000593223 MRPL14Q6P1L8 145 aaKnown RBP9.49□□□□□ -0.89
SMAD4-216ENST00000593223 TRIM50Q86XT4 487 aa9.49□□□□□ -0.89
SMAD4-216ENST00000593223 GTF2IP78347 998 aa9.48□□□□□ -0.89
SMAD4-216ENST00000593223 LINC00528Q8N1L1 170 aa9.48□□□□□ -0.89
SMAD4-216ENST00000593223 ZNF395Q9H8N7 513 aaPredicted RBP9.48□□□□□ -0.89
SMAD4-216ENST00000593223 VRTNQ9H8Y1 702 aa9.48□□□□□ -0.89
SMAD4-216ENST00000593223 PTGIRP43119 386 aa9.47□□□□□ -0.89
SMAD4-216ENST00000593223 ATP1A2P50993 1020 aa9.47□□□□□ -0.89
SMAD4-216ENST00000593223 CDCA8Q53HL2 280 aa9.47□□□□□ -0.89
SMAD4-216ENST00000593223 PURBQ96QR8 312 aaKnown RBP9.47□□□□□ -0.89
SMAD4-216ENST00000593223 ATP13A2Q9NQ11 1180 aa9.47□□□□□ -0.89
SMAD4-216ENST00000593223 RASA1P20936 1047 aa9.46□□□□□ -0.9
SMAD4-216ENST00000593223 LARP1Q6PKG0 1096 aaKnown RBP9.46□□□□□ -0.9
SMAD4-216ENST00000593223 ARHGEF10LQ9HCE6 1279 aa9.46□□□□□ -0.9
SMAD4-216ENST00000593223 DACH1Q9UI36 760 aa9.46□□□□□ -0.9
SMAD4-216ENST00000593223 MEN1O00255 615 aa9.45□□□□□ -0.9
SMAD4-216ENST00000593223 GNRH1P01148 92 aa9.45□□□□□ -0.9
SMAD4-216ENST00000593223 TRIM46Q7Z4K8 759 aa9.45□□□□□ -0.9
SMAD4-216ENST00000593223 OGFOD1Q8N543 542 aa9.45□□□□□ -0.9
SMAD4-216ENST00000593223 RAB6BQ9NRW1 208 aa9.45□□□□□ -0.9
SMAD4-216ENST00000593223 DNAAF2Q9NVR5 837 aaKnown RBP9.45□□□□□ -0.9
SMAD4-216ENST00000593223 RBM19Q9Y4C8 960 aaKnown RBP9.45□□□□□ -0.9
SMAD4-216ENST00000593223 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.44□□□□□ -0.9
SMAD4-216ENST00000593223 ESCO1Q5FWF5 840 aa9.44□□□□□ -0.9
SMAD4-216ENST00000593223 ZNF594Q96JF6 807 aaPredicted RBP9.44□□□□□ -0.9
SMAD4-216ENST00000593223 ZFP42Q96MM3 310 aa9.44□□□□□ -0.9
SMAD4-216ENST00000593223 NLRP3Q96P20 1036 aa9.44□□□□□ -0.9
SMAD4-216ENST00000593223 PCDHGA11Q9Y5H2 935 aa9.44□□□□□ -0.9
SMAD4-216ENST00000593223 A0A1W2PRU2 124 aa9.43□□□□□ -0.9
SMAD4-216ENST00000593223 KANK4Q5T7N3 995 aaPredicted RBP9.43□□□□□ -0.9
SMAD4-216ENST00000593223 KDF1Q8NAX2 398 aaPredicted RBP9.43□□□□□ -0.9
SMAD4-216ENST00000593223 INSM2Q96T92 566 aaPredicted RBP9.43□□□□□ -0.9
SMAD4-216ENST00000593223 POLMQ9NP87 494 aaPredicted RBP9.43□□□□□ -0.9
SMAD4-216ENST00000593223 SPINT1O43278 529 aa9.42□□□□□ -0.9
SMAD4-216ENST00000593223 STAU1O95793 577 aaKnown RBP9.42□□□□□ -0.9
SMAD4-216ENST00000593223 CLDN10P78369 228 aa9.42□□□□□ -0.9
SMAD4-216ENST00000593223 PBXIP1Q96AQ6 731 aa9.42□□□□□ -0.9
SMAD4-216ENST00000593223 GDF10P55107 478 aa9.41□□□□□ -0.9
SMAD4-216ENST00000593223 CCDC102BQ68D86 513 aa9.41□□□□□ -0.9
SMAD4-216ENST00000593223 LARGE2Q8N3Y3 721 aa9.41□□□□□ -0.9
SMAD4-216ENST00000593223 TPCN2Q8NHX9 752 aa9.41□□□□□ -0.9
SMAD4-216ENST00000593223 SENP2Q9HC62 589 aa9.41□□□□□ -0.9
SMAD4-216ENST00000593223 CLN3Q13286 438 aa9.4□□□□□ -0.9
SMAD4-216ENST00000593223 CNKSR1Q969H4 720 aa9.4□□□□□ -0.9
SMAD4-216ENST00000593223 ETNK1Q9HBU6 452 aa9.4□□□□□ -0.9
SMAD4-216ENST00000593223 GMPR2Q9P2T1 348 aaKnown RBP9.4□□□□□ -0.9
SMAD4-216ENST00000593223 USP17L15C9J2P7 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L10C9JJH3 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L13C9JLJ4 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L12C9JPN9 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L11C9JVI0 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L21D6R901 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L18D6R9N7 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L22D6RA61 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L17D6RBQ6 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L19D6RCP7 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L20D6RJB6 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 USP17L24Q0WX57 530 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 CRTC2Q53ET0 693 aaPredicted RBP9.39□□□□□ -0.91
SMAD4-216ENST00000593223 KIFC2Q96AC6 838 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 SERTAD1Q9UHV2 236 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 KIAA1024Q9UPX6 916 aa9.39□□□□□ -0.91
SMAD4-216ENST00000593223 ACIN1Q9UKV3 1341 aaKnown RBP9.38□□□□□ -0.91
SMAD4-216ENST00000593223 FAM196BA6NMK8 535 aa9.38□□□□□ -0.91
SMAD4-216ENST00000593223 TTLL8A6PVC2 850 aa9.38□□□□□ -0.91
SMAD4-216ENST00000593223 POTECB2RU33 542 aa9.38□□□□□ -0.91
SMAD4-216ENST00000593223 ZBTB7BO15156 539 aaPredicted RBP9.38□□□□□ -0.91
SMAD4-216ENST00000593223 IL2RAP01589 272 aa9.38□□□□□ -0.91
SMAD4-216ENST00000593223 INHAP05111 366 aa9.38□□□□□ -0.91
SMAD4-216ENST00000593223 CTSOP43234 321 aaPredicted RBP9.38□□□□□ -0.91
SMAD4-216ENST00000593223 SCNN1DP51172 638 aa9.38□□□□□ -0.91
SMAD4-216ENST00000593223 SLC27A3Q5K4L6 730 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 169.7 ms