RNA–Protein interactions for RNA: ENST00000592991.1

LDLRAD4-218, Transcript of low density lipoprotein receptor class A domain containing 4, human

TSL 1 (best) BASIC

Gene LDLRAD4, Length 1,640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDLRAD4-218	ENST00000592991	CRB1	P82279	1406 aa		33.44	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	LMOD3	Q0VAK6	560 aa		33.44	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	USP35	Q9P2H5	1018 aa		33.44	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	TRMT2A	Q8IZ69	625 aa	Known RBP	33.43	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	TAT	P17735	454 aa	Predicted RBP	33.42	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	PLEKHO1	Q53GL0	409 aa	Predicted RBP	33.42	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	C8orf37	Q96NL8	207 aa		33.42	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	NWD2	Q9ULI1	1742 aa		33.42	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	SLIT2	O94813	1529 aa		33.41	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	MAP3K5	Q99683	1374 aa		33.41	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	ZNF530	Q6P9A1	599 aa	Predicted RBP	33.41	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	PARP4	Q9UKK3	1724 aa	Known RBP	33.39	■■■□□ 2.94
LDLRAD4-218	ENST00000592991	AMOT	Q4VCS5	1084 aa		33.39	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	GNAT3	A8MTJ3	354 aa		33.38	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	TSR2	Q969E8	191 aa	Known RBP	33.38	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	LAS1L	Q9Y4W2	734 aa	Known RBP	33.38	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	PKD1L3	Q7Z443	1732 aa		33.38	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	RTF1	Q92541	710 aa	Known RBP	33.37	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	IL16	Q14005	1332 aa		33.36	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	OVOS2	A0A0G2JMS6	1433 aa		33.36	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	NGLY1	Q96IV0	654 aa		33.35	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	LRRC37A3	O60309	1634 aa		33.34	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	FANCI	Q9NVI1	1328 aa		33.34	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	VIRMA	Q69YN4	1812 aa	Known RBP	33.33	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	MYH16	Q9H6N6	1097 aa		33.33	■■■□□ 2.93
LDLRAD4-218	ENST00000592991	IL2RB	P14784	551 aa		33.32	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	IL17RE	Q8NFR9	667 aa		33.32	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	AKAP4	Q5JQC9	854 aa		33.31	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	SUPT16H	Q9Y5B9	1047 aa	Known RBP	33.31	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	CALD1	Q05682	793 aa	Known RBP	33.31	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	C1orf141	Q5JVX7	400 aa		33.31	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	MEX3C	Q5U5Q3	659 aa	Known RBP	33.31	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	WNK3	Q9BYP7	1800 aa		33.3	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	HTATSF1	O43719	755 aa	Known RBP	33.3	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	SPG7	Q9UQ90	795 aa		33.3	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	MPRIP	Q6WCQ1	1025 aa		33.29	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	SHANK3	Q9BYB0	1731 aa		33.29	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	BCL9L	Q86UU0	1499 aa		33.29	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	LGR6	Q9HBX8	967 aa		33.28	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	IFT57	Q9NWB7	429 aa		33.28	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	ZNF853	P0CG23	659 aa		33.28	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	UNC5CL	Q8IV45	518 aa		33.27	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	33.27	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	DISP2	A7MBM2	1401 aa		33.26	■■■□□ 2.92
LDLRAD4-218	ENST00000592991	MBIP	Q9NS73	344 aa		33.26	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	RCAN3	Q9UKA8	241 aa		33.26	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	CCDC9	Q9Y3X0	531 aa	Known RBP	33.26	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	SPATA31A1	Q5TZJ5	1347 aa		33.26	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	PLEKHG2	Q9H7P9	1386 aa		33.26	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	CYP27B1	O15528	508 aa		33.25	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	PHKG2	P15735	406 aa		33.25	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	GNAI1	P63096	354 aa		33.25	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	CFAP44	Q96MT7	982 aa		33.25	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	FNBP4	Q8N3X1	1017 aa	Predicted RBP	33.24	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	ZCRB1	Q8TBF4	217 aa	Known RBP	33.24	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	MIS18A	Q9NYP9	233 aa		33.24	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	SPATA31A5	Q5VU36	1347 aa		33.24	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	SPATA31A7	Q8IWB4	1347 aa		33.24	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	EXOSC9	Q06265	439 aa	Known RBP	33.23	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	CEMIP	Q8WUJ3	1361 aa		33.23	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	KDM6A	O15550	1401 aa	Predicted RBP	33.21	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	RNMT	O43148	476 aa	Known RBP	33.21	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	USP21	Q9UK80	565 aa		33.21	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	ADAMTS7	Q9UKP4	1686 aa		33.21	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	IFNL2	Q8IZJ0	200 aa		33.2	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	SCN11A	Q9UI33	1791 aa		33.2	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	33.2	■■■□□ 2.91
LDLRAD4-218	ENST00000592991	AFF2	P51816	1311 aa		33.18	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	PCDH11X	Q9BZA7	1347 aa		33.18	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	PCDH11Y	Q9BZA8	1340 aa		33.18	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	CHL1	O00533	1208 aa		33.18	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	DDX54	Q8TDD1	881 aa	Known RBP	33.17	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	VPS72	Q15906	364 aa		33.17	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	TSPYL4	Q9UJ04	414 aa		33.15	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	SIPA1L3	O60292	1781 aa	Predicted RBP	33.15	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	THRAP3	Q9Y2W1	955 aa	Known RBP	33.14	■■■□□ 2.9
LDLRAD4-218	ENST00000592991	TEF	Q10587	303 aa		33.13	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	TAF7	Q15545	349 aa	Predicted RBP	33.13	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	KRT24	Q2M2I5	525 aa		33.13	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	FBXO41	Q8TF61	875 aa		33.13	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	TSPYL6	Q8N831	410 aa		33.12	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	GTF3C3	Q9Y5Q9	886 aa		33.11	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	IRX6	P78412	446 aa	Predicted RBP	33.1	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	ELL2	O00472	640 aa	Predicted RBP	33.1	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	FAM98C	Q17RN3	349 aa	Known RBP	33.1	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	C8orf58	Q8NAV2	365 aa		33.1	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	DCAF5	Q96JK2	942 aa		33.1	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	KDM3B	Q7LBC6	1761 aa		33.09	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	TNS2	Q63HR2	1409 aa		33.09	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	HSP90AB1	P08238	724 aa	Known RBP	33.08	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	BARGIN	Q6ZT62	677 aa		33.08	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	RNF123	Q5XPI4	1314 aa		33.08	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	TOGARAM1	Q9Y4F4	1720 aa		33.07	■■■□□ 2.89
LDLRAD4-218	ENST00000592991	BCAR3	O75815	825 aa		33.07	■■■□□ 2.88
LDLRAD4-218	ENST00000592991	EXOC5	O00471	708 aa		33.06	■■■□□ 2.88
LDLRAD4-218	ENST00000592991	BCL2L13	Q9BXK5	485 aa		33.06	■■■□□ 2.88
LDLRAD4-218	ENST00000592991	GLI3	P10071	1580 aa		33.06	■■■□□ 2.88
LDLRAD4-218	ENST00000592991	MRC1	P22897	1456 aa		33.06	■■■□□ 2.88
LDLRAD4-218	ENST00000592991	RARS	P54136	660 aa	Known RBP	33.06	■■■□□ 2.88
LDLRAD4-218	ENST00000592991	RRP1	P56182	461 aa	Known RBP	33.06	■■■□□ 2.88

Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms