RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 NSD2O96028 1365 aa19.06■□□□□ 0.64
CLIP3-205ENST00000592017 FAM208AQ9UK61 1670 aaKnown RBP19.06■□□□□ 0.64
CLIP3-205ENST00000592017 RAPGEF4Q8WZA2 1011 aa19.06■□□□□ 0.64
CLIP3-205ENST00000592017 PRIM1P49642 420 aaKnown RBP19.05■□□□□ 0.64
CLIP3-205ENST00000592017 PDGFDQ9GZP0 370 aaPredicted RBP19.05■□□□□ 0.64
CLIP3-205ENST00000592017 TATP17735 454 aaPredicted RBP19.04■□□□□ 0.64
CLIP3-205ENST00000592017 ANKRD26Q9UPS8 1709 aa19.03■□□□□ 0.64
CLIP3-205ENST00000592017 MORC1Q86VD1 984 aa19.03■□□□□ 0.64
CLIP3-205ENST00000592017 NHSQ6T4R5 1651 aa19.02■□□□□ 0.64
CLIP3-205ENST00000592017 RGPD3A6NKT7 1758 aaPredicted RBP19.02■□□□□ 0.64
CLIP3-205ENST00000592017 RGPD4Q7Z3J3 1758 aa19.02■□□□□ 0.64
CLIP3-205ENST00000592017 LRRC4BQ9NT99 713 aa19.02■□□□□ 0.64
CLIP3-205ENST00000592017 SLC15A2Q16348 729 aa19.01■□□□□ 0.63
CLIP3-205ENST00000592017 SYTL4Q96C24 671 aaPredicted RBP19.01■□□□□ 0.63
CLIP3-205ENST00000592017 EYA1Q99502 592 aa19.01■□□□□ 0.63
CLIP3-205ENST00000592017 STK32BQ9NY57 414 aa19.01■□□□□ 0.63
CLIP3-205ENST00000592017 RGPD2P0DJD1 1756 aa19.01■□□□□ 0.63
CLIP3-205ENST00000592017 CNGB1Q14028 1251 aaPredicted RBP19■□□□□ 0.63
CLIP3-205ENST00000592017 AMER1Q5JTC6 1135 aaPredicted RBP19■□□□□ 0.63
CLIP3-205ENST00000592017 SPON1Q9HCB6 807 aa19■□□□□ 0.63
CLIP3-205ENST00000592017 CYP27B1O15528 508 aa18.99■□□□□ 0.63
CLIP3-205ENST00000592017 EIF4A2Q14240 407 aaKnown RBP18.99■□□□□ 0.63
CLIP3-205ENST00000592017 CC2D1BQ5T0F9 858 aaKnown RBP18.98■□□□□ 0.63
CLIP3-205ENST00000592017 NCAPD2Q15021 1401 aa18.98■□□□□ 0.63
CLIP3-205ENST00000592017 ZBTB7AO95365 584 aa18.97■□□□□ 0.63
CLIP3-205ENST00000592017 KCNQ4P56696 695 aa18.97■□□□□ 0.63
CLIP3-205ENST00000592017 ZNF827Q17R98 1081 aa18.97■□□□□ 0.63
CLIP3-205ENST00000592017 PER1O15534 1290 aaPredicted RBP18.96■□□□□ 0.63
CLIP3-205ENST00000592017 SLC27A3Q5K4L6 730 aa18.96■□□□□ 0.63
CLIP3-205ENST00000592017 PCDH11XQ9BZA7 1347 aa18.96■□□□□ 0.63
CLIP3-205ENST00000592017 PCDH11YQ9BZA8 1340 aa18.96■□□□□ 0.63
CLIP3-205ENST00000592017 AKT1S1Q96B36 256 aa18.94■□□□□ 0.62
CLIP3-205ENST00000592017 ATF5Q9Y2D1 282 aaPredicted RBP18.94■□□□□ 0.62
CLIP3-205ENST00000592017 BTAF1O14981 1849 aa18.94■□□□□ 0.62
CLIP3-205ENST00000592017 SHANK3Q9BYB0 1731 aa18.94■□□□□ 0.62
CLIP3-205ENST00000592017 PTGER2P43116 358 aa18.92■□□□□ 0.62
CLIP3-205ENST00000592017 NKX1-1Q15270 411 aaPredicted RBP18.92■□□□□ 0.62
CLIP3-205ENST00000592017 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLIP3-205ENST00000592017 SPG7Q9UQ90 795 aa18.92■□□□□ 0.62
CLIP3-205ENST00000592017 MAP2P11137 1827 aaKnown RBP18.92■□□□□ 0.62
CLIP3-205ENST00000592017 MPRIPQ6WCQ1 1025 aa18.91■□□□□ 0.62
CLIP3-205ENST00000592017 PPP1R1BQ9UD71 204 aaPredicted RBP18.91■□□□□ 0.62
CLIP3-205ENST00000592017 CCNL1Q9UK58 526 aaPredicted RBP18.9■□□□□ 0.62
CLIP3-205ENST00000592017 IGSF1Q8N6C5 1336 aa18.9■□□□□ 0.62
CLIP3-205ENST00000592017 KAT6BQ8WYB5 2073 aa18.89■□□□□ 0.62
CLIP3-205ENST00000592017 PAPPAQ13219 1627 aa18.89■□□□□ 0.62
CLIP3-205ENST00000592017 CASZ1Q86V15 1759 aa18.89■□□□□ 0.61
CLIP3-205ENST00000592017 ZEB1P37275 1124 aaPredicted RBP18.89■□□□□ 0.61
CLIP3-205ENST00000592017 MTFR1LQ9H019 292 aa18.89■□□□□ 0.61
CLIP3-205ENST00000592017 NPC1L1Q9UHC9 1359 aa18.89■□□□□ 0.61
CLIP3-205ENST00000592017 PIGBQ92521 554 aa18.88■□□□□ 0.61
CLIP3-205ENST00000592017 SGIP1Q9BQI5 828 aa18.88■□□□□ 0.61
CLIP3-205ENST00000592017 DOT1LQ8TEK3 1739 aa18.88■□□□□ 0.61
CLIP3-205ENST00000592017 PHKG2P15735 406 aa18.87■□□□□ 0.61
CLIP3-205ENST00000592017 MTHFSP49914 203 aa18.86■□□□□ 0.61
CLIP3-205ENST00000592017 AEBP1Q8IUX7 1158 aa18.86■□□□□ 0.61
CLIP3-205ENST00000592017 IFNL2Q8IZJ0 200 aa18.86■□□□□ 0.61
CLIP3-205ENST00000592017 PNPLA7Q6ZV29 1317 aa18.85■□□□□ 0.61
CLIP3-205ENST00000592017 IL13P35225 146 aa18.85■□□□□ 0.61
CLIP3-205ENST00000592017 TFCP2L1Q9NZI6 479 aa18.85■□□□□ 0.61
CLIP3-205ENST00000592017 PALLDQ8WX93 1383 aa18.84■□□□□ 0.61
CLIP3-205ENST00000592017 PKD1L3Q7Z443 1732 aa18.83■□□□□ 0.6
CLIP3-205ENST00000592017 PLEKHO1Q53GL0 409 aaPredicted RBP18.82■□□□□ 0.6
CLIP3-205ENST00000592017 SULT6B1Q6IMI4 303 aa18.82■□□□□ 0.6
CLIP3-205ENST00000592017 SMARCC1Q92922 1105 aaPredicted RBP18.82■□□□□ 0.6
CLIP3-205ENST00000592017 SLC16A10Q8TF71 515 aa18.81■□□□□ 0.6
CLIP3-205ENST00000592017 TMOD3Q9NYL9 352 aa18.81■□□□□ 0.6
CLIP3-205ENST00000592017 PLEKHG2Q9H7P9 1386 aa18.81■□□□□ 0.6
CLIP3-205ENST00000592017 COL23A1Q86Y22 540 aaPredicted RBP18.8■□□□□ 0.6
CLIP3-205ENST00000592017 ARXQ96QS3 562 aa18.8■□□□□ 0.6
CLIP3-205ENST00000592017 ASAP1Q9ULH1 1129 aa18.8■□□□□ 0.6
CLIP3-205ENST00000592017 AMOTQ4VCS5 1084 aa18.79■□□□□ 0.6
CLIP3-205ENST00000592017 ZNF530Q6P9A1 599 aaPredicted RBP18.79■□□□□ 0.6
CLIP3-205ENST00000592017 FHDC1Q9C0D6 1143 aaPredicted RBP18.79■□□□□ 0.6
CLIP3-205ENST00000592017 ATG3Q9NT62 314 aa18.79■□□□□ 0.6
CLIP3-205ENST00000592017 LY75O60449 1722 aa18.79■□□□□ 0.6
CLIP3-205ENST00000592017 TOGARAM1Q9Y4F4 1720 aa18.79■□□□□ 0.6
CLIP3-205ENST00000592017 SYT17Q9BSW7 474 aa18.78■□□□□ 0.6
CLIP3-205ENST00000592017 KDRP35968 1356 aa18.78■□□□□ 0.6
CLIP3-205ENST00000592017 LOC102724428A0A0B4J2F2 783 aa18.77■□□□□ 0.6
CLIP3-205ENST00000592017 DIAPH1O60610 1272 aaKnown RBP18.77■□□□□ 0.6
CLIP3-205ENST00000592017 SIK1P57059 783 aa18.77■□□□□ 0.6
CLIP3-205ENST00000592017 DDX10Q13206 875 aaKnown RBP18.77■□□□□ 0.6
CLIP3-205ENST00000592017 DCAF5Q96JK2 942 aa18.77■□□□□ 0.6
CLIP3-205ENST00000592017 ERVV-2B6SEH9 535 aa18.76■□□□□ 0.59
CLIP3-205ENST00000592017 HSP90AB1P08238 724 aaKnown RBP18.76■□□□□ 0.59
CLIP3-205ENST00000592017 AMIGO3Q86WK7 504 aa18.76■□□□□ 0.59
CLIP3-205ENST00000592017 MSH5O43196 834 aa18.75■□□□□ 0.59
CLIP3-205ENST00000592017 ITPK1Q13572 414 aa18.75■□□□□ 0.59
CLIP3-205ENST00000592017 SMIM5Q71RC9 77 aa18.75■□□□□ 0.59
CLIP3-205ENST00000592017 KDM6AO15550 1401 aaPredicted RBP18.74■□□□□ 0.59
CLIP3-205ENST00000592017 COL3A1P02461 1466 aaPredicted RBP18.74■□□□□ 0.59
CLIP3-205ENST00000592017 HMOX1P09601 288 aa18.74■□□□□ 0.59
CLIP3-205ENST00000592017 PPP2R1AP30153 589 aa18.74■□□□□ 0.59
CLIP3-205ENST00000592017 LINC00116Q8NCU8 138 aa18.74■□□□□ 0.59
CLIP3-205ENST00000592017 CFAP53Q96M91 514 aa18.74■□□□□ 0.59
CLIP3-205ENST00000592017 U2SURPO15042 1029 aaKnown RBP18.73■□□□□ 0.59
CLIP3-205ENST00000592017 HMGB2P26583 209 aaKnown RBP18.73■□□□□ 0.59
CLIP3-205ENST00000592017 POLD1P28340 1107 aa18.72■□□□□ 0.59
CLIP3-205ENST00000592017 CABP4P57796 275 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms