RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 CHD4Q14839 1912 aa16.51■□□□□ 0.23
CLIP3-204ENST00000590559 DDX54Q8TDD1 881 aaKnown RBP16.51■□□□□ 0.23
CLIP3-204ENST00000590559 FHDC1Q9C0D6 1143 aaPredicted RBP16.51■□□□□ 0.23
CLIP3-204ENST00000590559 SLC27A3Q5K4L6 730 aa16.5■□□□□ 0.23
CLIP3-204ENST00000590559 ANKRD26Q9UPS8 1709 aa16.5■□□□□ 0.23
CLIP3-204ENST00000590559 AMPHP49418 695 aa16.49■□□□□ 0.23
CLIP3-204ENST00000590559 TMF1P82094 1093 aa16.49■□□□□ 0.23
CLIP3-204ENST00000590559 RRS1Q15050 365 aaKnown RBP16.49■□□□□ 0.23
CLIP3-204ENST00000590559 NBPF6Q5VWK0 638 aa16.49■□□□□ 0.23
CLIP3-204ENST00000590559 ZCRB1Q8TBF4 217 aaKnown RBP16.49■□□□□ 0.23
CLIP3-204ENST00000590559 NBPF4Q96M43 638 aa16.49■□□□□ 0.23
CLIP3-204ENST00000590559 DCAF8L1A6NGE4 600 aa16.48■□□□□ 0.23
CLIP3-204ENST00000590559 GGNBP2Q9H3C7 697 aa16.48■□□□□ 0.23
CLIP3-204ENST00000590559 CGNL1Q0VF96 1302 aa16.47■□□□□ 0.23
CLIP3-204ENST00000590559 PRIM1P49642 420 aaKnown RBP16.47■□□□□ 0.23
CLIP3-204ENST00000590559 INSRP06213 1382 aa16.47■□□□□ 0.23
CLIP3-204ENST00000590559 KIF24Q5T7B8 1368 aa16.47■□□□□ 0.23
CLIP3-204ENST00000590559 TAF1LQ8IZX4 1826 aa16.47■□□□□ 0.23
CLIP3-204ENST00000590559 PNPLA7Q6ZV29 1317 aa16.46■□□□□ 0.23
CLIP3-204ENST00000590559 PKD1L3Q7Z443 1732 aa16.46■□□□□ 0.23
CLIP3-204ENST00000590559 TRIM26Q12899 539 aaPredicted RBP16.46■□□□□ 0.23
CLIP3-204ENST00000590559 SLC16A10Q8TF71 515 aa16.46■□□□□ 0.23
CLIP3-204ENST00000590559 ARXQ96QS3 562 aa16.46■□□□□ 0.23
CLIP3-204ENST00000590559 NCAPD2Q15021 1401 aa16.45■□□□□ 0.22
CLIP3-204ENST00000590559 TOGARAM1Q9Y4F4 1720 aa16.45■□□□□ 0.22
CLIP3-204ENST00000590559 ITGB4P16144 1822 aa16.45■□□□□ 0.22
CLIP3-204ENST00000590559 CARD14Q9BXL6 1004 aa16.45■□□□□ 0.22
CLIP3-204ENST00000590559 C5P01031 1676 aa16.44■□□□□ 0.22
CLIP3-204ENST00000590559 HSP90AB2PQ58FF8 381 aa16.44■□□□□ 0.22
CLIP3-204ENST00000590559 MAP2P11137 1827 aaKnown RBP16.44■□□□□ 0.22
CLIP3-204ENST00000590559 FLT4P35916 1363 aa16.43■□□□□ 0.22
CLIP3-204ENST00000590559 KCNQ4P56696 695 aa16.43■□□□□ 0.22
CLIP3-204ENST00000590559 USHBP1Q8N6Y0 703 aa16.43■□□□□ 0.22
CLIP3-204ENST00000590559 SMG6Q86US8 1419 aaKnown RBP16.43■□□□□ 0.22
CLIP3-204ENST00000590559 CDCA8Q53HL2 280 aa16.42■□□□□ 0.22
CLIP3-204ENST00000590559 SYTL4Q96C24 671 aaPredicted RBP16.42■□□□□ 0.22
CLIP3-204ENST00000590559 TIMELESSQ9UNS1 1208 aa16.4■□□□□ 0.22
CLIP3-204ENST00000590559 NSD3Q9BZ95 1437 aa16.39■□□□□ 0.21
CLIP3-204ENST00000590559 RAPGEF4Q8WZA2 1011 aa16.39■□□□□ 0.21
CLIP3-204ENST00000590559 TFCP2L1Q9NZI6 479 aa16.39■□□□□ 0.21
CLIP3-204ENST00000590559 PCDH11XQ9BZA7 1347 aa16.39■□□□□ 0.21
CLIP3-204ENST00000590559 PCDH11YQ9BZA8 1340 aa16.39■□□□□ 0.21
CLIP3-204ENST00000590559 CYP27B1O15528 508 aa16.38■□□□□ 0.21
CLIP3-204ENST00000590559 TATP17735 454 aaPredicted RBP16.38■□□□□ 0.21
CLIP3-204ENST00000590559 ZNF784Q8NCA9 323 aaPredicted RBP16.38■□□□□ 0.21
CLIP3-204ENST00000590559 CCNL1Q9UK58 526 aaPredicted RBP16.38■□□□□ 0.21
CLIP3-204ENST00000590559 EMILIN1Q9Y6C2 1016 aa16.38■□□□□ 0.21
CLIP3-204ENST00000590559 UBR3Q6ZT12 1888 aa16.37■□□□□ 0.21
CLIP3-204ENST00000590559 COL23A1Q86Y22 540 aaPredicted RBP16.36■□□□□ 0.21
CLIP3-204ENST00000590559 C4BP0C0L5 1744 aa16.36■□□□□ 0.21
CLIP3-204ENST00000590559 POLD1P28340 1107 aa16.35■□□□□ 0.21
CLIP3-204ENST00000590559 NKX1-1Q15270 411 aaPredicted RBP16.35■□□□□ 0.21
CLIP3-204ENST00000590559 WASHC2AQ641Q2 1341 aa16.35■□□□□ 0.21
CLIP3-204ENST00000590559 CLSPNQ9HAW4 1339 aa16.35■□□□□ 0.21
CLIP3-204ENST00000590559 NLGN2Q8NFZ4 835 aa16.33■□□□□ 0.2
CLIP3-204ENST00000590559 PALLDQ8WX93 1383 aa16.33■□□□□ 0.2
CLIP3-204ENST00000590559 MPRIPQ6WCQ1 1025 aa16.31■□□□□ 0.2
CLIP3-204ENST00000590559 EYA1Q99502 592 aa16.31■□□□□ 0.2
CLIP3-204ENST00000590559 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.31■□□□□ 0.2
CLIP3-204ENST00000590559 POLKQ9UBT6 870 aa16.31■□□□□ 0.2
CLIP3-204ENST00000590559 PLEKHG2Q9H7P9 1386 aa16.3■□□□□ 0.2
CLIP3-204ENST00000590559 AMIGO3Q86WK7 504 aa16.3■□□□□ 0.2
CLIP3-204ENST00000590559 PIGBQ92521 554 aa16.3■□□□□ 0.2
CLIP3-204ENST00000590559 CEP350Q5VT06 3117 aa16.3■□□□□ 0.2
CLIP3-204ENST00000590559 HMGB2P26583 209 aaKnown RBP16.29■□□□□ 0.2
CLIP3-204ENST00000590559 GPR162Q16538 588 aa16.29■□□□□ 0.2
CLIP3-204ENST00000590559 ZNF831Q5JPB2 1677 aa16.29■□□□□ 0.2
CLIP3-204ENST00000590559 FLAD1Q8NFF5 587 aa16.28■□□□□ 0.2
CLIP3-204ENST00000590559 SMARCC1Q92922 1105 aaPredicted RBP16.28■□□□□ 0.2
CLIP3-204ENST00000590559 YBX3P16989 372 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLIP3-204ENST00000590559 SPG7Q9UQ90 795 aa16.27■□□□□ 0.2
CLIP3-204ENST00000590559 PPM1GO15355 546 aaPredicted RBP16.26■□□□□ 0.19
CLIP3-204ENST00000590559 KLHL34Q8N239 644 aa16.26■□□□□ 0.19
CLIP3-204ENST00000590559 PHKG2P15735 406 aa16.25■□□□□ 0.19
CLIP3-204ENST00000590559 EIF4A2Q14240 407 aaKnown RBP16.25■□□□□ 0.19
CLIP3-204ENST00000590559 MSL1Q68DK7 614 aa16.25■□□□□ 0.19
CLIP3-204ENST00000590559 MSH5O43196 834 aa16.24■□□□□ 0.19
CLIP3-204ENST00000590559 LINC00116Q8NCU8 138 aa16.24■□□□□ 0.19
CLIP3-204ENST00000590559 CD2APQ9Y5K6 639 aa16.24■□□□□ 0.19
CLIP3-204ENST00000590559 COL5A3P25940 1745 aaPredicted RBP16.24■□□□□ 0.19
CLIP3-204ENST00000590559 IGSF1Q8N6C5 1336 aa16.23■□□□□ 0.19
CLIP3-204ENST00000590559 LOC102724428A0A0B4J2F2 783 aa16.23■□□□□ 0.19
CLIP3-204ENST00000590559 SIK1P57059 783 aa16.23■□□□□ 0.19
CLIP3-204ENST00000590559 IFNL2Q8IZJ0 200 aa16.23■□□□□ 0.19
CLIP3-204ENST00000590559 KIF13BQ9NQT8 1826 aa16.23■□□□□ 0.19
CLIP3-204ENST00000590559 SSFA2P28290 1259 aa16.22■□□□□ 0.19
CLIP3-204ENST00000590559 ITPK1Q13572 414 aa16.22■□□□□ 0.19
CLIP3-204ENST00000590559 ASAP1Q9ULH1 1129 aa16.22■□□□□ 0.19
CLIP3-204ENST00000590559 KDRP35968 1356 aa16.22■□□□□ 0.19
CLIP3-204ENST00000590559 KIAA1551Q9HCM1 1747 aa16.22■□□□□ 0.19
CLIP3-204ENST00000590559 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.21■□□□□ 0.19
CLIP3-204ENST00000590559 GRIN3BO60391 1043 aa16.21■□□□□ 0.19
CLIP3-204ENST00000590559 C1QTNF8P60827 252 aa16.21■□□□□ 0.19
CLIP3-204ENST00000590559 SMIM5Q71RC9 77 aa16.21■□□□□ 0.19
CLIP3-204ENST00000590559 AK7Q96M32 723 aa16.21■□□□□ 0.19
CLIP3-204ENST00000590559 TMOD3Q9NYL9 352 aa16.21■□□□□ 0.19
CLIP3-204ENST00000590559 HSPA5P11021 654 aaKnown RBP16.2■□□□□ 0.18
CLIP3-204ENST00000590559 EIF4G2P78344 907 aaKnown RBP eCLIP16.2■□□□□ 0.18
CLIP3-204ENST00000590559 PELP1Q8IZL8 1130 aaKnown RBP16.2■□□□□ 0.18
CLIP3-204ENST00000590559 PANK3Q9H999 370 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms