RNA–Protein interactions for RNA: ENST00000588555.1

SCAMP4-210, Transcript of secretory carrier membrane protein 4, human

Gene SCAMP4, Length 1,785 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAMP4-210	ENST00000588555	MEGF6	O75095	1541 aa		33.84	■■■■□ 3.01
SCAMP4-210	ENST00000588555	GNAT3	A8MTJ3	354 aa		33.83	■■■■□ 3.01
SCAMP4-210	ENST00000588555	AMOT	Q4VCS5	1084 aa		33.83	■■■■□ 3.01
SCAMP4-210	ENST00000588555	CRB1	P82279	1406 aa		33.83	■■■■□ 3.01
SCAMP4-210	ENST00000588555	GNAI1	P63096	354 aa		33.83	■■■■□ 3.01
SCAMP4-210	ENST00000588555	FKBP8	Q14318	412 aa		33.83	■■■■□ 3.01
SCAMP4-210	ENST00000588555	PLEKHO1	Q53GL0	409 aa	Predicted RBP	33.83	■■■■□ 3.01
SCAMP4-210	ENST00000588555	RTF1	Q92541	710 aa	Known RBP	33.82	■■■■□ 3
SCAMP4-210	ENST00000588555	CFAP44	Q96MT7	982 aa		33.82	■■■■□ 3
SCAMP4-210	ENST00000588555	RRP1	P56182	461 aa	Known RBP	33.8	■■■■□ 3
SCAMP4-210	ENST00000588555	RAPGEF4	Q8WZA2	1011 aa		33.8	■■■■□ 3
SCAMP4-210	ENST00000588555	BTG4	Q9NY30	223 aa		33.79	■■■■□ 3
SCAMP4-210	ENST00000588555	TOM1L2	Q6ZVM7	507 aa		33.78	■■■■□ 3
SCAMP4-210	ENST00000588555	LAS1L	Q9Y4W2	734 aa	Known RBP	33.78	■■■■□ 3
SCAMP4-210	ENST00000588555	EXOSC9	Q06265	439 aa	Known RBP	33.77	■■■■□ 3
SCAMP4-210	ENST00000588555	JCAD	Q9P266	1359 aa		33.77	■■■■□ 3
SCAMP4-210	ENST00000588555	ZNF530	Q6P9A1	599 aa	Predicted RBP	33.77	■■■■□ 3
SCAMP4-210	ENST00000588555	LARP1	Q6PKG0	1096 aa	Known RBP	33.77	■■■■□ 3
SCAMP4-210	ENST00000588555	CARD10	Q9BWT7	1032 aa		33.77	■■■■□ 3
SCAMP4-210	ENST00000588555	MBIP	Q9NS73	344 aa		33.77	■■■■□ 3
SCAMP4-210	ENST00000588555	PLCH1	Q4KWH8	1693 aa		33.76	■■■■□ 3
SCAMP4-210	ENST00000588555	PKD1L3	Q7Z443	1732 aa		33.76	■■■■□ 3
SCAMP4-210	ENST00000588555	TAT	P17735	454 aa	Predicted RBP	33.76	■■■■□ 3
SCAMP4-210	ENST00000588555	IRX6	P78412	446 aa	Predicted RBP	33.76	■■■■□ 3
SCAMP4-210	ENST00000588555	IL17RE	Q8NFR9	667 aa		33.76	■■■■□ 3
SCAMP4-210	ENST00000588555	STRN4	Q9NRL3	753 aa		33.76	■■■■□ 3
SCAMP4-210	ENST00000588555	AKAP4	Q5JQC9	854 aa		33.75	■■■□□ 2.99
SCAMP4-210	ENST00000588555	CT47B1	P0C2W7	299 aa	Predicted RBP	33.75	■■■□□ 2.99
SCAMP4-210	ENST00000588555	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	33.75	■■■□□ 2.99
SCAMP4-210	ENST00000588555	CHL1	O00533	1208 aa		33.74	■■■□□ 2.99
SCAMP4-210	ENST00000588555	EVA1C	P58658	441 aa		33.74	■■■□□ 2.99
SCAMP4-210	ENST00000588555	CEMIP	Q8WUJ3	1361 aa		33.74	■■■□□ 2.99
SCAMP4-210	ENST00000588555	PARP4	Q9UKK3	1724 aa	Known RBP	33.73	■■■□□ 2.99
SCAMP4-210	ENST00000588555	OVOS2	A0A0G2JMS6	1433 aa		33.72	■■■□□ 2.99
SCAMP4-210	ENST00000588555	ADAMTS2	O95450	1211 aa		33.72	■■■□□ 2.99
SCAMP4-210	ENST00000588555	ADAMTS7	Q9UKP4	1686 aa		33.7	■■■□□ 2.99
SCAMP4-210	ENST00000588555	NRAP	Q86VF7	1730 aa		33.7	■■■□□ 2.99
SCAMP4-210	ENST00000588555	NUTM2B	A6NNL0	878 aa	Predicted RBP	33.7	■■■□□ 2.98
SCAMP4-210	ENST00000588555	NUTM2E	B1AL46	878 aa	Predicted RBP	33.7	■■■□□ 2.98
SCAMP4-210	ENST00000588555	RARS	P54136	660 aa	Known RBP	33.7	■■■□□ 2.98
SCAMP4-210	ENST00000588555	NUTM2A	Q8IVF1	878 aa	Predicted RBP	33.7	■■■□□ 2.98
SCAMP4-210	ENST00000588555	VIRMA	Q69YN4	1812 aa	Known RBP	33.68	■■■□□ 2.98
SCAMP4-210	ENST00000588555	C1orf141	Q5JVX7	400 aa		33.68	■■■□□ 2.98
SCAMP4-210	ENST00000588555	BCAR3	O75815	825 aa		33.67	■■■□□ 2.98
SCAMP4-210	ENST00000588555	SPG7	Q9UQ90	795 aa		33.67	■■■□□ 2.98
SCAMP4-210	ENST00000588555	LGR6	Q9HBX8	967 aa		33.66	■■■□□ 2.98
SCAMP4-210	ENST00000588555	NWD2	Q9ULI1	1742 aa		33.65	■■■□□ 2.98
SCAMP4-210	ENST00000588555	PLIN1	O60240	522 aa		33.65	■■■□□ 2.98
SCAMP4-210	ENST00000588555	SLIT2	O94813	1529 aa		33.64	■■■□□ 2.98
SCAMP4-210	ENST00000588555	MPRIP	Q6WCQ1	1025 aa		33.63	■■■□□ 2.97
SCAMP4-210	ENST00000588555	IL2RB	P14784	551 aa		33.62	■■■□□ 2.97
SCAMP4-210	ENST00000588555	HSPA1L	P34931	641 aa		33.62	■■■□□ 2.97
SCAMP4-210	ENST00000588555	RNMT	O43148	476 aa	Known RBP	33.62	■■■□□ 2.97
SCAMP4-210	ENST00000588555	PHKG2	P15735	406 aa		33.62	■■■□□ 2.97
SCAMP4-210	ENST00000588555	ERICH6B	Q5W0A0	696 aa		33.62	■■■□□ 2.97
SCAMP4-210	ENST00000588555	TSPYL6	Q8N831	410 aa		33.62	■■■□□ 2.97
SCAMP4-210	ENST00000588555	BABAM1	Q9NWV8	329 aa		33.61	■■■□□ 2.97
SCAMP4-210	ENST00000588555	MIS18A	Q9NYP9	233 aa		33.61	■■■□□ 2.97
SCAMP4-210	ENST00000588555	SPATA31A6	Q5VVP1	1343 aa		33.61	■■■□□ 2.97
SCAMP4-210	ENST00000588555	CYP27B1	O15528	508 aa		33.6	■■■□□ 2.97
SCAMP4-210	ENST00000588555	TAF7	Q15545	349 aa	Predicted RBP	33.6	■■■□□ 2.97
SCAMP4-210	ENST00000588555	C8orf58	Q8NAV2	365 aa		33.6	■■■□□ 2.97
SCAMP4-210	ENST00000588555	TSPYL4	Q9UJ04	414 aa		33.6	■■■□□ 2.97
SCAMP4-210	ENST00000588555	SHANK3	Q9BYB0	1731 aa		33.6	■■■□□ 2.97
SCAMP4-210	ENST00000588555	SCN11A	Q9UI33	1791 aa		33.59	■■■□□ 2.97
SCAMP4-210	ENST00000588555	VAMP4	O75379	141 aa		33.59	■■■□□ 2.97
SCAMP4-210	ENST00000588555	IFNL2	Q8IZJ0	200 aa		33.59	■■■□□ 2.97
SCAMP4-210	ENST00000588555	KDM6A	O15550	1401 aa	Predicted RBP	33.59	■■■□□ 2.97
SCAMP4-210	ENST00000588555	DISP2	A7MBM2	1401 aa		33.58	■■■□□ 2.97
SCAMP4-210	ENST00000588555	SIPA1L3	O60292	1781 aa	Predicted RBP	33.58	■■■□□ 2.97
SCAMP4-210	ENST00000588555	LRP6	O75581	1613 aa		33.58	■■■□□ 2.97
SCAMP4-210	ENST00000588555	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	33.57	■■■□□ 2.97
SCAMP4-210	ENST00000588555	ZNF428	Q96B54	188 aa		33.57	■■■□□ 2.97
SCAMP4-210	ENST00000588555	USP35	Q9P2H5	1018 aa		33.57	■■■□□ 2.96
SCAMP4-210	ENST00000588555	TWISTNB	Q3B726	338 aa	Predicted RBP	33.56	■■■□□ 2.96
SCAMP4-210	ENST00000588555	ZCRB1	Q8TBF4	217 aa	Known RBP	33.56	■■■□□ 2.96
SCAMP4-210	ENST00000588555	SSH1	Q8WYL5	1049 aa		33.56	■■■□□ 2.96
SCAMP4-210	ENST00000588555	BCL2L13	Q9BXK5	485 aa		33.56	■■■□□ 2.96
SCAMP4-210	ENST00000588555	KDM3B	Q7LBC6	1761 aa		33.55	■■■□□ 2.96
SCAMP4-210	ENST00000588555	WNK3	Q9BYP7	1800 aa		33.55	■■■□□ 2.96
SCAMP4-210	ENST00000588555	KRT24	Q2M2I5	525 aa		33.54	■■■□□ 2.96
SCAMP4-210	ENST00000588555	PCDH11X	Q9BZA7	1347 aa		33.54	■■■□□ 2.96
SCAMP4-210	ENST00000588555	PCDH11Y	Q9BZA8	1340 aa		33.54	■■■□□ 2.96
SCAMP4-210	ENST00000588555	ELL2	O00472	640 aa	Predicted RBP	33.53	■■■□□ 2.96
SCAMP4-210	ENST00000588555	TEF	Q10587	303 aa		33.53	■■■□□ 2.96
SCAMP4-210	ENST00000588555	ALDH1L2	Q3SY69	923 aa		33.53	■■■□□ 2.96
SCAMP4-210	ENST00000588555	C20orf194	Q5TEA3	1177 aa		33.52	■■■□□ 2.96
SCAMP4-210	ENST00000588555	SMC4	Q9NTJ3	1288 aa		33.51	■■■□□ 2.95
SCAMP4-210	ENST00000588555	MRC1	P22897	1456 aa		33.5	■■■□□ 2.95
SCAMP4-210	ENST00000588555	DCAF5	Q96JK2	942 aa		33.5	■■■□□ 2.95
SCAMP4-210	ENST00000588555	SPATA31A1	Q5TZJ5	1347 aa		33.5	■■■□□ 2.95
SCAMP4-210	ENST00000588555	HSP90AB1	P08238	724 aa	Known RBP	33.49	■■■□□ 2.95
SCAMP4-210	ENST00000588555	BCL9L	Q86UU0	1499 aa		33.48	■■■□□ 2.95
SCAMP4-210	ENST00000588555	BRPF1	P55201	1214 aa	Predicted RBP	33.47	■■■□□ 2.95
SCAMP4-210	ENST00000588555	C8orf37	Q96NL8	207 aa		33.47	■■■□□ 2.95
SCAMP4-210	ENST00000588555	SPATA31A5	Q5VU36	1347 aa		33.46	■■■□□ 2.95
SCAMP4-210	ENST00000588555	SPATA31A7	Q8IWB4	1347 aa		33.46	■■■□□ 2.95
SCAMP4-210	ENST00000588555	NKX1-1	Q15270	411 aa	Predicted RBP	33.45	■■■□□ 2.95
SCAMP4-210	ENST00000588555	UNC5CL	Q8IV45	518 aa		33.45	■■■□□ 2.95
SCAMP4-210	ENST00000588555	FNBP4	Q8N3X1	1017 aa	Predicted RBP	33.45	■■■□□ 2.95

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