RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 ZNF827Q17R98 1081 aa19.88■□□□□ 0.77
VMP1-206ENST00000587945 RAPGEF4Q8WZA2 1011 aa19.88■□□□□ 0.77
VMP1-206ENST00000587945 FAM208AQ9UK61 1670 aaKnown RBP19.87■□□□□ 0.77
VMP1-206ENST00000587945 PPM1GO15355 546 aaPredicted RBP19.87■□□□□ 0.77
VMP1-206ENST00000587945 HSPA5P11021 654 aaKnown RBP19.87■□□□□ 0.77
VMP1-206ENST00000587945 PTGER2P43116 358 aa19.87■□□□□ 0.77
VMP1-206ENST00000587945 KCNQ4P56696 695 aa19.87■□□□□ 0.77
VMP1-206ENST00000587945 TATP17735 454 aaPredicted RBP19.86■□□□□ 0.77
VMP1-206ENST00000587945 EIF4G2P78344 907 aaKnown RBP eCLIP19.86■□□□□ 0.77
VMP1-206ENST00000587945 CGNL1Q0VF96 1302 aa19.85■□□□□ 0.77
VMP1-206ENST00000587945 CASZ1Q86V15 1759 aa19.85■□□□□ 0.77
VMP1-206ENST00000587945 MYOM1P52179 1685 aa19.84■□□□□ 0.77
VMP1-206ENST00000587945 NSD2O96028 1365 aa19.84■□□□□ 0.77
VMP1-206ENST00000587945 KIF24Q5T7B8 1368 aa19.84■□□□□ 0.77
VMP1-206ENST00000587945 SLC27A3Q5K4L6 730 aa19.83■□□□□ 0.77
VMP1-206ENST00000587945 MTFR1LQ9H019 292 aa19.83■□□□□ 0.77
VMP1-206ENST00000587945 BTAF1O14981 1849 aa19.83■□□□□ 0.76
VMP1-206ENST00000587945 RGPD2P0DJD1 1756 aa19.83■□□□□ 0.76
VMP1-206ENST00000587945 TNNT2P45379 298 aaPredicted RBP19.82■□□□□ 0.76
VMP1-206ENST00000587945 AKT1S1Q96B36 256 aa19.82■□□□□ 0.76
VMP1-206ENST00000587945 POLKQ9UBT6 870 aa19.81■□□□□ 0.76
VMP1-206ENST00000587945 KIF20BQ96Q89 1820 aa19.81■□□□□ 0.76
VMP1-206ENST00000587945 SGIP1Q9BQI5 828 aa19.8■□□□□ 0.76
VMP1-206ENST00000587945 PANK3Q9H999 370 aa19.8■□□□□ 0.76
VMP1-206ENST00000587945 PAPPAQ13219 1627 aa19.8■□□□□ 0.76
VMP1-206ENST00000587945 WASHC2AQ641Q2 1341 aa19.79■□□□□ 0.76
VMP1-206ENST00000587945 CYP27B1O15528 508 aa19.79■□□□□ 0.76
VMP1-206ENST00000587945 PCDH11XQ9BZA7 1347 aa19.78■□□□□ 0.76
VMP1-206ENST00000587945 PCDH11YQ9BZA8 1340 aa19.78■□□□□ 0.76
VMP1-206ENST00000587945 CCNL1Q9UK58 526 aaPredicted RBP19.78■□□□□ 0.76
VMP1-206ENST00000587945 KAT6BQ8WYB5 2073 aa19.77■□□□□ 0.76
VMP1-206ENST00000587945 EYA1Q99502 592 aa19.77■□□□□ 0.76
VMP1-206ENST00000587945 FHDC1Q9C0D6 1143 aaPredicted RBP19.77■□□□□ 0.76
VMP1-206ENST00000587945 TFCP2L1Q9NZI6 479 aa19.77■□□□□ 0.76
VMP1-206ENST00000587945 SHANK3Q9BYB0 1731 aa19.76■□□□□ 0.75
VMP1-206ENST00000587945 PNPLA7Q6ZV29 1317 aa19.76■□□□□ 0.75
VMP1-206ENST00000587945 DCAF8L1A6NGE4 600 aa19.75■□□□□ 0.75
VMP1-206ENST00000587945 MPRIPQ6WCQ1 1025 aa19.75■□□□□ 0.75
VMP1-206ENST00000587945 ARXQ96QS3 562 aa19.75■□□□□ 0.75
VMP1-206ENST00000587945 SYT17Q9BSW7 474 aa19.75■□□□□ 0.75
VMP1-206ENST00000587945 DOT1LQ8TEK3 1739 aa19.75■□□□□ 0.75
VMP1-206ENST00000587945 YY1P25490 414 aa19.73■□□□□ 0.75
VMP1-206ENST00000587945 EIF4A2Q14240 407 aaKnown RBP19.73■□□□□ 0.75
VMP1-206ENST00000587945 NCAPD2Q15021 1401 aa19.73■□□□□ 0.75
VMP1-206ENST00000587945 SPG7Q9UQ90 795 aa19.72■□□□□ 0.75
VMP1-206ENST00000587945 SLC16A10Q8TF71 515 aa19.71■□□□□ 0.75
VMP1-206ENST00000587945 PIGBQ92521 554 aa19.7■□□□□ 0.74
VMP1-206ENST00000587945 PALLDQ8WX93 1383 aa19.7■□□□□ 0.74
VMP1-206ENST00000587945 MSH5O43196 834 aa19.69■□□□□ 0.74
VMP1-206ENST00000587945 NKX1-1Q15270 411 aaPredicted RBP19.69■□□□□ 0.74
VMP1-206ENST00000587945 MORC1Q86VD1 984 aa19.68■□□□□ 0.74
VMP1-206ENST00000587945 COL23A1Q86Y22 540 aaPredicted RBP19.68■□□□□ 0.74
VMP1-206ENST00000587945 POLD1P28340 1107 aa19.67■□□□□ 0.74
VMP1-206ENST00000587945 KLHL34Q8N239 644 aa19.67■□□□□ 0.74
VMP1-206ENST00000587945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.67■□□□□ 0.746e-10■■□□□ 11.8
VMP1-206ENST00000587945 ANKRD26Q9UPS8 1709 aa19.66■□□□□ 0.74
VMP1-206ENST00000587945 PHKG2P15735 406 aa19.66■□□□□ 0.74
VMP1-206ENST00000587945 SMARCC1Q92922 1105 aaPredicted RBP19.66■□□□□ 0.74
VMP1-206ENST00000587945 LY75O60449 1722 aa19.65■□□□□ 0.74
VMP1-206ENST00000587945 IFNL2Q8IZJ0 200 aa19.65■□□□□ 0.74
VMP1-206ENST00000587945 KNSTRNQ9Y448 316 aa19.65■□□□□ 0.74
VMP1-206ENST00000587945 MSL1Q68DK7 614 aa19.64■□□□□ 0.73
VMP1-206ENST00000587945 IGSF1Q8N6C5 1336 aa19.64■□□□□ 0.73
VMP1-206ENST00000587945 MAP3K5Q99683 1374 aa19.63■□□□□ 0.73
VMP1-206ENST00000587945 KIF7Q2M1P5 1343 aa19.63■□□□□ 0.73
VMP1-206ENST00000587945 SMIM5Q71RC9 77 aa19.63■□□□□ 0.73
VMP1-206ENST00000587945 TMOD3Q9NYL9 352 aa19.63■□□□□ 0.73
VMP1-206ENST00000587945 ASAP1Q9ULH1 1129 aa19.63■□□□□ 0.73
VMP1-206ENST00000587945 MAP2P11137 1827 aaKnown RBP19.62■□□□□ 0.73
VMP1-206ENST00000587945 PKD1L3Q7Z443 1732 aa19.62■□□□□ 0.73
VMP1-206ENST00000587945 AMIGO3Q86WK7 504 aa19.62■□□□□ 0.73
VMP1-206ENST00000587945 TOGARAM1Q9Y4F4 1720 aa19.62■□□□□ 0.73
VMP1-206ENST00000587945 AEBP1Q8IUX7 1158 aa19.61■□□□□ 0.73
VMP1-206ENST00000587945 UTRNP46939 3433 aa19.61■□□□□ 0.73
VMP1-206ENST00000587945 LOC102724428A0A0B4J2F2 783 aa19.6■□□□□ 0.73
VMP1-206ENST00000587945 SIK1P57059 783 aa19.6■□□□□ 0.73
VMP1-206ENST00000587945 AMER1Q5JTC6 1135 aaPredicted RBP19.6■□□□□ 0.73
VMP1-206ENST00000587945 NLGN2Q8NFZ4 835 aa19.6■□□□□ 0.73
VMP1-206ENST00000587945 AK7Q96M32 723 aa19.6■□□□□ 0.73
VMP1-206ENST00000587945 LINC00116Q8NCU8 138 aa19.59■□□□□ 0.73
VMP1-206ENST00000587945 TUBGCP6Q96RT7 1819 aa19.58■□□□□ 0.73
VMP1-206ENST00000587945 PHF14O94880 888 aa19.58■□□□□ 0.72
VMP1-206ENST00000587945 ITPK1Q13572 414 aa19.58■□□□□ 0.72
VMP1-206ENST00000587945 GPR162Q16538 588 aa19.58■□□□□ 0.72
VMP1-206ENST00000587945 PLEKHO1Q53GL0 409 aaPredicted RBP19.58■□□□□ 0.72
VMP1-206ENST00000587945 ATG3Q9NT62 314 aa19.58■□□□□ 0.72
VMP1-206ENST00000587945 QSER1Q2KHR3 1735 aa19.57■□□□□ 0.72
VMP1-206ENST00000587945 HMGB2P26583 209 aaKnown RBP19.57■□□□□ 0.72
VMP1-206ENST00000587945 ZNF530Q6P9A1 599 aaPredicted RBP19.57■□□□□ 0.72
VMP1-206ENST00000587945 FLAD1Q8NFF5 587 aa19.57■□□□□ 0.72
VMP1-206ENST00000587945 IL13P35225 146 aa19.56■□□□□ 0.72
VMP1-206ENST00000587945 ATP6V1AP38606 617 aa19.56■□□□□ 0.72
VMP1-206ENST00000587945 SULT6B1Q6IMI4 303 aa19.56■□□□□ 0.72
VMP1-206ENST00000587945 PELP1Q8IZL8 1130 aaKnown RBP19.56■□□□□ 0.72
VMP1-206ENST00000587945 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.55■□□□□ 0.72
VMP1-206ENST00000587945 ERVV-2B6SEH9 535 aa19.54■□□□□ 0.72
VMP1-206ENST00000587945 HSP90AB1P08238 724 aaKnown RBP19.54■□□□□ 0.72
VMP1-206ENST00000587945 AMOTQ4VCS5 1084 aa19.54■□□□□ 0.72
VMP1-206ENST00000587945 DCAF5Q96JK2 942 aa19.54■□□□□ 0.72
VMP1-206ENST00000587945 C5P01031 1676 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms