RNA–Protein interactions for RNA: ENST00000585726.5

RETREG3-202, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 522 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-202ENST00000585726 COL3A1P02461 1466 aaPredicted RBP28.83■■■□□ 2.21
RETREG3-202ENST00000585726 HMOX1P09601 288 aa28.82■■■□□ 2.2
RETREG3-202ENST00000585726 TRIM37O94972 964 aa28.8■■■□□ 2.2
RETREG3-202ENST00000585726 PRKRIP1Q9H875 184 aaPredicted RBP28.8■■■□□ 2.2
RETREG3-202ENST00000585726 MYBBP1AQ9BQG0 1328 aaKnown RBP28.79■■■□□ 2.2
RETREG3-202ENST00000585726 SF3B2Q13435 895 aaKnown RBP28.78■■■□□ 2.2
RETREG3-202ENST00000585726 RGPD1P0DJD0 1748 aa28.77■■■□□ 2.2
RETREG3-202ENST00000585726 SPG7Q9UQ90 795 aa28.77■■■□□ 2.2
RETREG3-202ENST00000585726 NUDCQ9Y266 331 aa28.77■■■□□ 2.2
RETREG3-202ENST00000585726 CCDC125Q86Z20 511 aa28.75■■■□□ 2.19
RETREG3-202ENST00000585726 ACSBG1Q96GR2 724 aa28.75■■■□□ 2.19
RETREG3-202ENST00000585726 PCDH11XQ9BZA7 1347 aa28.74■■■□□ 2.19
RETREG3-202ENST00000585726 PCDH11YQ9BZA8 1340 aa28.74■■■□□ 2.19
RETREG3-202ENST00000585726 EP400Q96L91 3159 aa28.74■■■□□ 2.19
RETREG3-202ENST00000585726 KDRP35968 1356 aa28.73■■■□□ 2.19
RETREG3-202ENST00000585726 U2AF1L5P0DN76 240 aaPredicted RBP28.72■■■□□ 2.19
RETREG3-202ENST00000585726 U2AF1Q01081 240 aaKnown RBP eCLIP28.72■■■□□ 2.19
RETREG3-202ENST00000585726 PLEKHO1Q53GL0 409 aaPredicted RBP28.72■■■□□ 2.19
RETREG3-202ENST00000585726 SHANK3Q9BYB0 1731 aa28.72■■■□□ 2.19
RETREG3-202ENST00000585726 CYP27B1O15528 508 aa28.71■■■□□ 2.19
RETREG3-202ENST00000585726 ANP32CO43423 234 aa28.71■■■□□ 2.19
RETREG3-202ENST00000585726 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.7■■■□□ 2.18
RETREG3-202ENST00000585726 PTF1AQ7RTS3 328 aa28.69■■■□□ 2.18
RETREG3-202ENST00000585726 DEFB132Q7Z7B7 95 aa28.69■■■□□ 2.18
RETREG3-202ENST00000585726 KCNQ2O43526 872 aa28.68■■■□□ 2.18
RETREG3-202ENST00000585726 APBA3O96018 575 aa28.68■■■□□ 2.18
RETREG3-202ENST00000585726 AMOTQ4VCS5 1084 aa28.68■■■□□ 2.18
RETREG3-202ENST00000585726 PKD1L3Q7Z443 1732 aa28.68■■■□□ 2.18
RETREG3-202ENST00000585726 BCL9O00512 1426 aa28.68■■■□□ 2.18
RETREG3-202ENST00000585726 ZNF530Q6P9A1 599 aaPredicted RBP28.66■■■□□ 2.18
RETREG3-202ENST00000585726 IFNL2Q8IZJ0 200 aa28.66■■■□□ 2.18
RETREG3-202ENST00000585726 SYTL4Q96C24 671 aaPredicted RBP28.66■■■□□ 2.18
RETREG3-202ENST00000585726 PHKG2P15735 406 aa28.65■■■□□ 2.18
RETREG3-202ENST00000585726 BAG6P46379 1132 aa28.65■■■□□ 2.18
RETREG3-202ENST00000585726 BCL11BQ9C0K0 894 aaPredicted RBP28.65■■■□□ 2.18
RETREG3-202ENST00000585726 PRKAR2BP31323 418 aa28.63■■■□□ 2.17
RETREG3-202ENST00000585726 RSPH6AQ9H0K4 717 aa28.63■■■□□ 2.17
RETREG3-202ENST00000585726 PLEKHG2Q9H7P9 1386 aa28.62■■■□□ 2.17
RETREG3-202ENST00000585726 SBF2Q86WG5 1849 aa28.62■■■□□ 2.17
RETREG3-202ENST00000585726 PRIM1P49642 420 aaKnown RBP28.62■■■□□ 2.17
RETREG3-202ENST00000585726 EN1Q05925 392 aaPredicted RBP28.62■■■□□ 2.17
RETREG3-202ENST00000585726 C1orf141Q5JVX7 400 aa28.62■■■□□ 2.17
RETREG3-202ENST00000585726 TNS1Q9HBL0 1735 aaKnown RBP28.61■■■□□ 2.17
RETREG3-202ENST00000585726 MTHFSDQ2M296 383 aaKnown RBP28.6■■■□□ 2.17
RETREG3-202ENST00000585726 FCHSD2O94868 740 aa28.59■■■□□ 2.17
RETREG3-202ENST00000585726 NKX1-1Q15270 411 aaPredicted RBP28.59■■■□□ 2.17
RETREG3-202ENST00000585726 DOT1LQ8TEK3 1739 aa28.57■■■□□ 2.16
RETREG3-202ENST00000585726 PHACTR3Q96KR7 559 aa28.57■■■□□ 2.16
RETREG3-202ENST00000585726 NHSQ6T4R5 1651 aa28.57■■■□□ 2.16
RETREG3-202ENST00000585726 EZH2Q15910 746 aaKnown RBP28.56■■■□□ 2.16
RETREG3-202ENST00000585726 KAT6BQ8WYB5 2073 aa28.55■■■□□ 2.16
RETREG3-202ENST00000585726 HSP90AB1P08238 724 aaKnown RBP28.55■■■□□ 2.16
RETREG3-202ENST00000585726 WDR43Q15061 677 aaKnown RBP eCLIP28.55■■■□□ 2.16
RETREG3-202ENST00000585726 MPRIPQ6WCQ1 1025 aa28.55■■■□□ 2.16
RETREG3-202ENST00000585726 CCDC184Q52MB2 194 aa28.54■■■□□ 2.16
RETREG3-202ENST00000585726 AKAP4Q5JQC9 854 aa28.54■■■□□ 2.16
RETREG3-202ENST00000585726 DCAF5Q96JK2 942 aa28.53■■■□□ 2.16
RETREG3-202ENST00000585726 CAMKK2Q96RR4 588 aa28.53■■■□□ 2.16
RETREG3-202ENST00000585726 GAS2L2Q8NHY3 880 aa28.52■■■□□ 2.16
RETREG3-202ENST00000585726 NEFMP07197 916 aa28.51■■■□□ 2.15
RETREG3-202ENST00000585726 TOGARAM1Q9Y4F4 1720 aa28.5■■■□□ 2.15
RETREG3-202ENST00000585726 PLSCR1O15162 318 aa28.49■■■□□ 2.15
RETREG3-202ENST00000585726 PNNQ9H307 717 aaKnown RBP28.49■■■□□ 2.15
RETREG3-202ENST00000585726 TMOD3Q9NYL9 352 aa28.49■■■□□ 2.15
RETREG3-202ENST00000585726 KDM6AO15550 1401 aaPredicted RBP28.49■■■□□ 2.15
RETREG3-202ENST00000585726 BTAF1O14981 1849 aa28.48■■■□□ 2.15
RETREG3-202ENST00000585726 MRS2Q9HD23 443 aa28.48■■■□□ 2.15
RETREG3-202ENST00000585726 PIGBQ92521 554 aa28.47■■■□□ 2.15
RETREG3-202ENST00000585726 PLEKHF1Q96S99 279 aa28.47■■■□□ 2.15
RETREG3-202ENST00000585726 LGR6Q9HBX8 967 aa28.47■■■□□ 2.15
RETREG3-202ENST00000585726 ADAMTS8Q9UP79 889 aa28.47■■■□□ 2.15
RETREG3-202ENST00000585726 CABP4P57796 275 aa28.46■■■□□ 2.15
RETREG3-202ENST00000585726 CCDC146Q8IYE0 955 aa28.46■■■□□ 2.15
RETREG3-202ENST00000585726 MAPK8IP3Q9UPT6 1336 aa28.45■■■□□ 2.15
RETREG3-202ENST00000585726 GNAT3A8MTJ3 354 aa28.45■■■□□ 2.14
RETREG3-202ENST00000585726 ERVV-2B6SEH9 535 aa28.45■■■□□ 2.14
RETREG3-202ENST00000585726 RNMTO43148 476 aaKnown RBP28.44■■■□□ 2.14
RETREG3-202ENST00000585726 MAP3K5Q99683 1374 aa28.44■■■□□ 2.14
RETREG3-202ENST00000585726 TXNRD1Q16881 649 aa28.43■■■□□ 2.14
RETREG3-202ENST00000585726 ITGB4P16144 1822 aa28.42■■■□□ 2.14
RETREG3-202ENST00000585726 PROM2Q8N271 834 aa28.42■■■□□ 2.14
RETREG3-202ENST00000585726 DIEXFQ68CQ4 756 aaKnown RBP28.41■■■□□ 2.14
RETREG3-202ENST00000585726 NFATC2IPQ8NCF5 419 aa28.41■■■□□ 2.14
RETREG3-202ENST00000585726 ASAP1Q9ULH1 1129 aa28.39■■■□□ 2.14
RETREG3-202ENST00000585726 KCNQ4P56696 695 aa28.38■■■□□ 2.13
RETREG3-202ENST00000585726 IL17REQ8NFR9 667 aa28.38■■■□□ 2.13
RETREG3-202ENST00000585726 RTF1Q92541 710 aaKnown RBP28.38■■■□□ 2.13
RETREG3-202ENST00000585726 SLC52A2Q9HAB3 445 aa28.38■■■□□ 2.13
RETREG3-202ENST00000585726 NFE2L2Q16236 605 aa28.37■■■□□ 2.13
RETREG3-202ENST00000585726 SMARCC1Q92922 1105 aaPredicted RBP28.37■■■□□ 2.13
RETREG3-202ENST00000585726 RUNDC1Q96C34 613 aa28.37■■■□□ 2.13
RETREG3-202ENST00000585726 SCN11AQ9UI33 1791 aa28.37■■■□□ 2.13
RETREG3-202ENST00000585726 PALLDQ8WX93 1383 aa28.37■■■□□ 2.13
RETREG3-202ENST00000585726 DCTN1Q14203 1278 aa28.36■■■□□ 2.13
RETREG3-202ENST00000585726 MCM10Q7L590 875 aa28.36■■■□□ 2.13
RETREG3-202ENST00000585726 ATG3Q9NT62 314 aa28.36■■■□□ 2.13
RETREG3-202ENST00000585726 RGPD3A6NKT7 1758 aaPredicted RBP28.36■■■□□ 2.13
RETREG3-202ENST00000585726 RGPD4Q7Z3J3 1758 aa28.36■■■□□ 2.13
RETREG3-202ENST00000585726 PNISRQ8TF01 805 aaKnown RBP28.35■■■□□ 2.13
RETREG3-202ENST00000585726 RREB1Q92766 1687 aa28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms