RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PRIM1P49642 420 aaKnown RBP28.38■■■□□ 2.13
SHMT1-209ENST00000582653 KAT6BQ8WYB5 2073 aa28.38■■■□□ 2.13
SHMT1-209ENST00000582653 INSRP06213 1382 aa28.37■■■□□ 2.13
SHMT1-209ENST00000582653 KIF24Q5T7B8 1368 aa28.37■■■□□ 2.13
SHMT1-209ENST00000582653 BTAF1O14981 1849 aa28.37■■■□□ 2.13
SHMT1-209ENST00000582653 EIF4G2P78344 907 aaKnown RBP eCLIP28.37■■■□□ 2.13
SHMT1-209ENST00000582653 SLC27A3Q5K4L6 730 aa28.37■■■□□ 2.13
SHMT1-209ENST00000582653 USHBP1Q8N6Y0 703 aa28.36■■■□□ 2.13
SHMT1-209ENST00000582653 MTFR1LQ9H019 292 aa28.36■■■□□ 2.13
SHMT1-209ENST00000582653 DCAF8L1A6NGE4 600 aa28.35■■■□□ 2.13
SHMT1-209ENST00000582653 RAPGEF4Q8WZA2 1011 aa28.35■■■□□ 2.13
SHMT1-209ENST00000582653 SYTL4Q96C24 671 aaPredicted RBP28.35■■■□□ 2.13
SHMT1-209ENST00000582653 SMG6Q86US8 1419 aaKnown RBP28.35■■■□□ 2.13
SHMT1-209ENST00000582653 FLT4P35916 1363 aa28.34■■■□□ 2.13
SHMT1-209ENST00000582653 MEGF6O75095 1541 aa28.33■■■□□ 2.13
SHMT1-209ENST00000582653 TATP17735 454 aaPredicted RBP28.32■■■□□ 2.12
SHMT1-209ENST00000582653 EMILIN1Q9Y6C2 1016 aa28.32■■■□□ 2.12
SHMT1-209ENST00000582653 ZNF827Q17R98 1081 aa28.31■■■□□ 2.12
SHMT1-209ENST00000582653 AKT1S1Q96B36 256 aa28.31■■■□□ 2.12
SHMT1-209ENST00000582653 SGIP1Q9BQI5 828 aa28.31■■■□□ 2.12
SHMT1-209ENST00000582653 PAPPAQ13219 1627 aa28.29■■■□□ 2.12
SHMT1-209ENST00000582653 PPM1GO15355 546 aaPredicted RBP28.28■■■□□ 2.12
SHMT1-209ENST00000582653 NSD2O96028 1365 aa28.27■■■□□ 2.12
SHMT1-209ENST00000582653 SLC16A10Q8TF71 515 aa28.26■■■□□ 2.11
SHMT1-209ENST00000582653 SYT17Q9BSW7 474 aa28.25■■■□□ 2.11
SHMT1-209ENST00000582653 SHANK3Q9BYB0 1731 aa28.25■■■□□ 2.11
SHMT1-209ENST00000582653 WASHC2AQ641Q2 1341 aa28.24■■■□□ 2.11
SHMT1-209ENST00000582653 KCNQ4P56696 695 aa28.24■■■□□ 2.11
SHMT1-209ENST00000582653 FHDC1Q9C0D6 1143 aaPredicted RBP28.24■■■□□ 2.11
SHMT1-209ENST00000582653 YY1P25490 414 aa28.23■■■□□ 2.11
SHMT1-209ENST00000582653 PANK3Q9H999 370 aa28.23■■■□□ 2.11
SHMT1-209ENST00000582653 PCDH11XQ9BZA7 1347 aa28.22■■■□□ 2.11
SHMT1-209ENST00000582653 PCDH11YQ9BZA8 1340 aa28.22■■■□□ 2.11
SHMT1-209ENST00000582653 ARXQ96QS3 562 aa28.22■■■□□ 2.11
SHMT1-209ENST00000582653 TFCP2L1Q9NZI6 479 aa28.22■■■□□ 2.11
SHMT1-209ENST00000582653 TNNT2P45379 298 aaPredicted RBP28.21■■■□□ 2.11
SHMT1-209ENST00000582653 POLKQ9UBT6 870 aa28.21■■■□□ 2.11
SHMT1-209ENST00000582653 CCNL1Q9UK58 526 aaPredicted RBP28.21■■■□□ 2.11
SHMT1-209ENST00000582653 DOT1LQ8TEK3 1739 aa28.21■■■□□ 2.11
SHMT1-209ENST00000582653 CYP27B1O15528 508 aa28.2■■■□□ 2.1
SHMT1-209ENST00000582653 PNPLA7Q6ZV29 1317 aa28.19■■■□□ 2.1
SHMT1-209ENST00000582653 EYA1Q99502 592 aa28.17■■■□□ 2.1
SHMT1-209ENST00000582653 LY75O60449 1722 aa28.17■■■□□ 2.1
SHMT1-209ENST00000582653 HMGB2P26583 209 aaKnown RBP28.16■■■□□ 2.1
SHMT1-209ENST00000582653 MAP2P11137 1827 aaKnown RBP28.15■■■□□ 2.1
SHMT1-209ENST00000582653 NKX1-1Q15270 411 aaPredicted RBP28.15■■■□□ 2.1
SHMT1-209ENST00000582653 MPRIPQ6WCQ1 1025 aa28.15■■■□□ 2.1
SHMT1-209ENST00000582653 SPG7Q9UQ90 795 aa28.15■■■□□ 2.1
SHMT1-209ENST00000582653 NCAPD2Q15021 1401 aa28.15■■■□□ 2.1
SHMT1-209ENST00000582653 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.14■■■□□ 2.1
SHMT1-209ENST00000582653 ANKRD26Q9UPS8 1709 aa28.14■■■□□ 2.1
SHMT1-209ENST00000582653 QSER1Q2KHR3 1735 aa28.12■■■□□ 2.09
SHMT1-209ENST00000582653 POLD1P28340 1107 aa28.12■■■□□ 2.09
SHMT1-209ENST00000582653 MAP3K5Q99683 1374 aa28.11■■■□□ 2.09
SHMT1-209ENST00000582653 SMARCC1Q92922 1105 aaPredicted RBP28.09■■■□□ 2.09
SHMT1-209ENST00000582653 EIF4A2Q14240 407 aaKnown RBP28.08■■■□□ 2.09
SHMT1-209ENST00000582653 COL23A1Q86Y22 540 aaPredicted RBP28.08■■■□□ 2.09
SHMT1-209ENST00000582653 UTRNP46939 3433 aa28.08■■■□□ 2.09
SHMT1-209ENST00000582653 PIGBQ92521 554 aa28.07■■■□□ 2.08
SHMT1-209ENST00000582653 PALLDQ8WX93 1383 aa28.07■■■□□ 2.08
SHMT1-209ENST00000582653 IFNL2Q8IZJ0 200 aa28.05■■■□□ 2.08
SHMT1-209ENST00000582653 PKD1L3Q7Z443 1732 aa28.04■■■□□ 2.08
SHMT1-209ENST00000582653 KIF7Q2M1P5 1343 aa28.04■■■□□ 2.08
SHMT1-209ENST00000582653 MSH5O43196 834 aa28.04■■■□□ 2.08
SHMT1-209ENST00000582653 MORC1Q86VD1 984 aa28.04■■■□□ 2.08
SHMT1-209ENST00000582653 FLAD1Q8NFF5 587 aa28.04■■■□□ 2.08
SHMT1-209ENST00000582653 COL24A1Q17RW2 1714 aa28.04■■■□□ 2.08
SHMT1-209ENST00000582653 PHKG2P15735 406 aa28.03■■■□□ 2.08
SHMT1-209ENST00000582653 KNSTRNQ9Y448 316 aa28.03■■■□□ 2.08
SHMT1-209ENST00000582653 TUBGCP6Q96RT7 1819 aa28.02■■■□□ 2.08
SHMT1-209ENST00000582653 PLEKHG2Q9H7P9 1386 aa27.99■■■□□ 2.07
SHMT1-209ENST00000582653 ITGB4P16144 1822 aa27.99■■■□□ 2.07
SHMT1-209ENST00000582653 KLHL34Q8N239 644 aa27.99■■■□□ 2.07
SHMT1-209ENST00000582653 TMOD3Q9NYL9 352 aa27.99■■■□□ 2.07
SHMT1-209ENST00000582653 TOGARAM1Q9Y4F4 1720 aa27.98■■■□□ 2.07
SHMT1-209ENST00000582653 IGSF1Q8N6C5 1336 aa27.98■■■□□ 2.07
SHMT1-209ENST00000582653 GPR162Q16538 588 aa27.97■■■□□ 2.07
SHMT1-209ENST00000582653 LOC102724428A0A0B4J2F2 783 aa27.96■■■□□ 2.07
SHMT1-209ENST00000582653 SIK1P57059 783 aa27.96■■■□□ 2.07
SHMT1-209ENST00000582653 AMER1Q5JTC6 1135 aaPredicted RBP27.96■■■□□ 2.07
SHMT1-209ENST00000582653 C5P01031 1676 aa27.96■■■□□ 2.07
SHMT1-209ENST00000582653 AK7Q96M32 723 aa27.95■■■□□ 2.06
SHMT1-209ENST00000582653 ASAP1Q9ULH1 1129 aa27.95■■■□□ 2.06
SHMT1-209ENST00000582653 PLEKHO1Q53GL0 409 aaPredicted RBP27.94■■■□□ 2.06
SHMT1-209ENST00000582653 TAF1LQ8IZX4 1826 aa27.93■■■□□ 2.06
SHMT1-209ENST00000582653 ERVV-2B6SEH9 535 aa27.92■■■□□ 2.06
SHMT1-209ENST00000582653 MSL1Q68DK7 614 aa27.92■■■□□ 2.06
SHMT1-209ENST00000582653 NLGN2Q8NFZ4 835 aa27.92■■■□□ 2.06
SHMT1-209ENST00000582653 ATG3Q9NT62 314 aa27.92■■■□□ 2.06
SHMT1-209ENST00000582653 HSP90AB1P08238 724 aaKnown RBP27.91■■■□□ 2.06
SHMT1-209ENST00000582653 AMOTQ4VCS5 1084 aa27.91■■■□□ 2.06
SHMT1-209ENST00000582653 PER1O15534 1290 aaPredicted RBP27.9■■■□□ 2.06
SHMT1-209ENST00000582653 ATP6V1AP38606 617 aa27.9■■■□□ 2.06
SHMT1-209ENST00000582653 ZNF784Q8NCA9 323 aaPredicted RBP27.9■■■□□ 2.06
SHMT1-209ENST00000582653 LINC00116Q8NCU8 138 aa27.9■■■□□ 2.06
SHMT1-209ENST00000582653 DCAF5Q96JK2 942 aa27.9■■■□□ 2.06
SHMT1-209ENST00000582653 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.89■■■□□ 2.06
SHMT1-209ENST00000582653 AMIGO3Q86WK7 504 aa27.89■■■□□ 2.06
SHMT1-209ENST00000582653 AEBP1Q8IUX7 1158 aa27.89■■■□□ 2.06
SHMT1-209ENST00000582653 C4BP0C0L5 1744 aa27.89■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms