RNA–Protein interactions for RNA: ENST00000582122.1

TOP3A-212, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 553 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-212ENST00000582122 LRRC37A3O60309 1634 aa14.03□□□□□ -0.16
TOP3A-212ENST00000582122 IGSF1Q8N6C5 1336 aa14.02□□□□□ -0.17
TOP3A-212ENST00000582122 DIAPH1O60610 1272 aaKnown RBP14.02□□□□□ -0.17
TOP3A-212ENST00000582122 SPG7Q9UQ90 795 aa14.02□□□□□ -0.17
TOP3A-212ENST00000582122 PCDH11XQ9BZA7 1347 aa14.01□□□□□ -0.17
TOP3A-212ENST00000582122 PCDH11YQ9BZA8 1340 aa14.01□□□□□ -0.17
TOP3A-212ENST00000582122 IL13P35225 146 aa14.01□□□□□ -0.17
TOP3A-212ENST00000582122 FAM182BQ5T319 152 aa14.01□□□□□ -0.17
TOP3A-212ENST00000582122 MARCH10Q8NA82 808 aaPredicted RBP14.01□□□□□ -0.17
TOP3A-212ENST00000582122 NUDCQ9Y266 331 aa14.01□□□□□ -0.17
TOP3A-212ENST00000582122 PPP2R1AP30153 589 aa14□□□□□ -0.17
TOP3A-212ENST00000582122 CNGB1Q14028 1251 aaPredicted RBP14□□□□□ -0.17
TOP3A-212ENST00000582122 EZH2Q15910 746 aaKnown RBP14□□□□□ -0.17
TOP3A-212ENST00000582122 AMOTQ4VCS5 1084 aa14□□□□□ -0.17
TOP3A-212ENST00000582122 USHBP1Q8N6Y0 703 aa14□□□□□ -0.17
TOP3A-212ENST00000582122 CAMKK2Q96RR4 588 aa13.99□□□□□ -0.17
TOP3A-212ENST00000582122 BCL11BQ9C0K0 894 aaPredicted RBP13.99□□□□□ -0.17
TOP3A-212ENST00000582122 TRIM37O94972 964 aa13.98□□□□□ -0.17
TOP3A-212ENST00000582122 DDX54Q8TDD1 881 aaKnown RBP13.98□□□□□ -0.17
TOP3A-212ENST00000582122 MEGF6O75095 1541 aa13.98□□□□□ -0.17
TOP3A-212ENST00000582122 RGPD2P0DJD1 1756 aa13.98□□□□□ -0.17
TOP3A-212ENST00000582122 KDRP35968 1356 aa13.97□□□□□ -0.17
TOP3A-212ENST00000582122 APBA3O96018 575 aa13.97□□□□□ -0.17
TOP3A-212ENST00000582122 HMGB2P26583 209 aaKnown RBP13.97□□□□□ -0.17
TOP3A-212ENST00000582122 PLEKHO1Q53GL0 409 aaPredicted RBP13.97□□□□□ -0.17
TOP3A-212ENST00000582122 RREB1Q92766 1687 aa13.96□□□□□ -0.17
TOP3A-212ENST00000582122 HSP90AB1P08238 724 aaKnown RBP13.96□□□□□ -0.17
TOP3A-212ENST00000582122 NBPF14Q5TI25 921 aa13.96□□□□□ -0.17
TOP3A-212ENST00000582122 SULT6B1Q6IMI4 303 aa13.96□□□□□ -0.17
TOP3A-212ENST00000582122 YY1P25490 414 aa13.95□□□□□ -0.18
TOP3A-212ENST00000582122 IFNL2Q8IZJ0 200 aa13.95□□□□□ -0.18
TOP3A-212ENST00000582122 MYBBP1AQ9BQG0 1328 aaKnown RBP13.94□□□□□ -0.18
TOP3A-212ENST00000582122 U2SURPO15042 1029 aaKnown RBP13.94□□□□□ -0.18
TOP3A-212ENST00000582122 PLSCR1O15162 318 aa13.94□□□□□ -0.18
TOP3A-212ENST00000582122 PNNQ9H307 717 aaKnown RBP13.94□□□□□ -0.18
TOP3A-212ENST00000582122 NUP188Q5SRE5 1749 aa13.93□□□□□ -0.18
TOP3A-212ENST00000582122 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
TOP3A-212ENST00000582122 NKX1-1Q15270 411 aaPredicted RBP13.93□□□□□ -0.18
TOP3A-212ENST00000582122 C1orf141Q5JVX7 400 aa13.93□□□□□ -0.18
TOP3A-212ENST00000582122 COL3A1P02461 1466 aaPredicted RBP13.93□□□□□ -0.18
TOP3A-212ENST00000582122 PKD1L3Q7Z443 1732 aa13.93□□□□□ -0.18
TOP3A-212ENST00000582122 NEFMP07197 916 aa13.92□□□□□ -0.18
TOP3A-212ENST00000582122 PRKRIP1Q9H875 184 aaPredicted RBP13.92□□□□□ -0.18
TOP3A-212ENST00000582122 PPP1R1BQ9UD71 204 aaPredicted RBP13.92□□□□□ -0.18
TOP3A-212ENST00000582122 FCHSD2O94868 740 aa13.91□□□□□ -0.18
TOP3A-212ENST00000582122 SPON1Q9HCB6 807 aa13.91□□□□□ -0.18
TOP3A-212ENST00000582122 KAT6BQ8WYB5 2073 aa13.91□□□□□ -0.18
TOP3A-212ENST00000582122 SBF2Q86WG5 1849 aa13.9□□□□□ -0.18
TOP3A-212ENST00000582122 CYP27B1O15528 508 aa13.9□□□□□ -0.18
TOP3A-212ENST00000582122 U2AF1L5P0DN76 240 aaPredicted RBP13.9□□□□□ -0.18
TOP3A-212ENST00000582122 PHKG2P15735 406 aa13.9□□□□□ -0.18
TOP3A-212ENST00000582122 U2AF1Q01081 240 aaKnown RBP eCLIP13.9□□□□□ -0.18
TOP3A-212ENST00000582122 AEBP1Q8IUX7 1158 aa13.9□□□□□ -0.18
TOP3A-212ENST00000582122 DCAF5Q96JK2 942 aa13.9□□□□□ -0.18
TOP3A-212ENST00000582122 NHSQ6T4R5 1651 aa13.89□□□□□ -0.19
TOP3A-212ENST00000582122 ANP32CO43423 234 aa13.89□□□□□ -0.19
TOP3A-212ENST00000582122 HMOX1P09601 288 aa13.89□□□□□ -0.19
TOP3A-212ENST00000582122 PRIM1P49642 420 aaKnown RBP13.89□□□□□ -0.19
TOP3A-212ENST00000582122 ZNF530Q6P9A1 599 aaPredicted RBP13.89□□□□□ -0.19
TOP3A-212ENST00000582122 GAS2L2Q8NHY3 880 aa13.89□□□□□ -0.19
TOP3A-212ENST00000582122 ACSBG1Q96GR2 724 aa13.89□□□□□ -0.19
TOP3A-212ENST00000582122 ERVV-2B6SEH9 535 aa13.88□□□□□ -0.19
TOP3A-212ENST00000582122 AKAP4Q5JQC9 854 aa13.88□□□□□ -0.19
TOP3A-212ENST00000582122 SYTL4Q96C24 671 aaPredicted RBP13.88□□□□□ -0.19
TOP3A-212ENST00000582122 RGPD3A6NKT7 1758 aaPredicted RBP13.88□□□□□ -0.19
TOP3A-212ENST00000582122 RGPD4Q7Z3J3 1758 aa13.88□□□□□ -0.19
TOP3A-212ENST00000582122 SHANK3Q9BYB0 1731 aa13.87□□□□□ -0.19
TOP3A-212ENST00000582122 KCNQ2O43526 872 aa13.87□□□□□ -0.19
TOP3A-212ENST00000582122 SMARCC1Q92922 1105 aaPredicted RBP13.87□□□□□ -0.19
TOP3A-212ENST00000582122 SLC27A3Q5K4L6 730 aa13.86□□□□□ -0.19
TOP3A-212ENST00000582122 PRKAR2BP31323 418 aa13.85□□□□□ -0.19
TOP3A-212ENST00000582122 RSPH6AQ9H0K4 717 aa13.85□□□□□ -0.19
TOP3A-212ENST00000582122 TMOD3Q9NYL9 352 aa13.85□□□□□ -0.19
TOP3A-212ENST00000582122 WDR43Q15061 677 aaKnown RBP eCLIP13.84□□□□□ -0.19
TOP3A-212ENST00000582122 CABP4P57796 275 aa13.83□□□□□ -0.2
TOP3A-212ENST00000582122 TXNRD1Q16881 649 aa13.83□□□□□ -0.2
TOP3A-212ENST00000582122 MPRIPQ6WCQ1 1025 aa13.83□□□□□ -0.2
TOP3A-212ENST00000582122 DOT1LQ8TEK3 1739 aa13.82□□□□□ -0.2
TOP3A-212ENST00000582122 GNAT3A8MTJ3 354 aa13.82□□□□□ -0.2
TOP3A-212ENST00000582122 HTATSF1O43719 755 aaKnown RBP13.82□□□□□ -0.2
TOP3A-212ENST00000582122 MTHFSDQ2M296 383 aaKnown RBP13.82□□□□□ -0.2
TOP3A-212ENST00000582122 BTAF1O14981 1849 aa13.82□□□□□ -0.2
TOP3A-212ENST00000582122 MAPK8IP3Q9UPT6 1336 aa13.82□□□□□ -0.2
TOP3A-212ENST00000582122 RTF1Q92541 710 aaKnown RBP13.81□□□□□ -0.2
TOP3A-212ENST00000582122 MAP3K5Q99683 1374 aa13.81□□□□□ -0.2
TOP3A-212ENST00000582122 PTF1AQ7RTS3 328 aa13.8□□□□□ -0.2
TOP3A-212ENST00000582122 PIGBQ92521 554 aa13.8□□□□□ -0.2
TOP3A-212ENST00000582122 CASZ1Q86V15 1759 aa13.79□□□□□ -0.2
TOP3A-212ENST00000582122 RNMTO43148 476 aaKnown RBP13.79□□□□□ -0.2
TOP3A-212ENST00000582122 ANO8Q9HCE9 1232 aaPredicted RBP13.79□□□□□ -0.2
TOP3A-212ENST00000582122 PALLDQ8WX93 1383 aa13.79□□□□□ -0.2
TOP3A-212ENST00000582122 TEFQ10587 303 aa13.78□□□□□ -0.2
TOP3A-212ENST00000582122 PROM2Q8N271 834 aa13.78□□□□□ -0.2
TOP3A-212ENST00000582122 SLC52A2Q9HAB3 445 aa13.78□□□□□ -0.2
TOP3A-212ENST00000582122 STK32BQ9NY57 414 aa13.78□□□□□ -0.2
TOP3A-212ENST00000582122 CCNL1Q9UK58 526 aaPredicted RBP13.78□□□□□ -0.2
TOP3A-212ENST00000582122 KDM6AO15550 1401 aaPredicted RBP13.78□□□□□ -0.2
TOP3A-212ENST00000582122 ITGB4P16144 1822 aa13.77□□□□□ -0.21
TOP3A-212ENST00000582122 LMOD3Q0VAK6 560 aa13.77□□□□□ -0.21
TOP3A-212ENST00000582122 NFATC2IPQ8NCF5 419 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms