RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 NBPF14Q5TI25 921 aa22.73■■□□□ 1.23
SREBF1-219ENST00000580540 ANKRD26Q9UPS8 1709 aa22.73■■□□□ 1.23
SREBF1-219ENST00000580540 CNGB1Q14028 1251 aaPredicted RBP22.7■■□□□ 1.22
SREBF1-219ENST00000580540 SYTL4Q96C24 671 aaPredicted RBP22.69■■□□□ 1.22
SREBF1-219ENST00000580540 EIF4A2Q14240 407 aaKnown RBP22.68■■□□□ 1.22
SREBF1-219ENST00000580540 AMER1Q5JTC6 1135 aaPredicted RBP22.68■■□□□ 1.22
SREBF1-219ENST00000580540 EYA1Q99502 592 aa22.68■■□□□ 1.22
SREBF1-219ENST00000580540 CC2D1BQ5T0F9 858 aaKnown RBP22.67■■□□□ 1.22
SREBF1-219ENST00000580540 RREB1Q92766 1687 aa22.67■■□□□ 1.22
SREBF1-219ENST00000580540 TXNRD1Q16881 649 aa22.66■■□□□ 1.22
SREBF1-219ENST00000580540 PROM2Q8N271 834 aa22.66■■□□□ 1.22
SREBF1-219ENST00000580540 NUP188Q5SRE5 1749 aa22.65■■□□□ 1.22
SREBF1-219ENST00000580540 NHSQ6T4R5 1651 aa22.65■■□□□ 1.22
SREBF1-219ENST00000580540 PRIM1P49642 420 aaKnown RBP22.65■■□□□ 1.22
SREBF1-219ENST00000580540 PER1O15534 1290 aaPredicted RBP22.64■■□□□ 1.21
SREBF1-219ENST00000580540 PCDH11XQ9BZA7 1347 aa22.62■■□□□ 1.21
SREBF1-219ENST00000580540 PCDH11YQ9BZA8 1340 aa22.62■■□□□ 1.21
SREBF1-219ENST00000580540 SPG7Q9UQ90 795 aa22.61■■□□□ 1.21
SREBF1-219ENST00000580540 RGPD3A6NKT7 1758 aaPredicted RBP22.61■■□□□ 1.21
SREBF1-219ENST00000580540 RGPD4Q7Z3J3 1758 aa22.61■■□□□ 1.21
SREBF1-219ENST00000580540 SHANK3Q9BYB0 1731 aa22.6■■□□□ 1.21
SREBF1-219ENST00000580540 BTAF1O14981 1849 aa22.59■■□□□ 1.21
SREBF1-219ENST00000580540 CYP27B1O15528 508 aa22.59■■□□□ 1.21
SREBF1-219ENST00000580540 ANO8Q9HCE9 1232 aaPredicted RBP22.59■■□□□ 1.21
SREBF1-219ENST00000580540 STK32BQ9NY57 414 aa22.58■■□□□ 1.21
SREBF1-219ENST00000580540 NCAPD2Q15021 1401 aa22.57■■□□□ 1.2
SREBF1-219ENST00000580540 SRCAPQ6ZRS2 3230 aa22.57■■□□□ 1.2
SREBF1-219ENST00000580540 MTHFSP49914 203 aa22.57■■□□□ 1.2
SREBF1-219ENST00000580540 DOT1LQ8TEK3 1739 aa22.57■■□□□ 1.2
SREBF1-219ENST00000580540 IGSF1Q8N6C5 1336 aa22.56■■□□□ 1.2
SREBF1-219ENST00000580540 MPRIPQ6WCQ1 1025 aa22.54■■□□□ 1.2
SREBF1-219ENST00000580540 AEBP1Q8IUX7 1158 aa22.53■■□□□ 1.2
SREBF1-219ENST00000580540 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.53■■□□□ 1.2
SREBF1-219ENST00000580540 IL13P35225 146 aa22.52■■□□□ 1.2
SREBF1-219ENST00000580540 KCNQ4P56696 695 aa22.52■■□□□ 1.2
SREBF1-219ENST00000580540 SLC15A2Q16348 729 aa22.52■■□□□ 1.2
SREBF1-219ENST00000580540 SULT6B1Q6IMI4 303 aa22.52■■□□□ 1.2
SREBF1-219ENST00000580540 IFNL2Q8IZJ0 200 aa22.52■■□□□ 1.2
SREBF1-219ENST00000580540 LRRC4BQ9NT99 713 aa22.52■■□□□ 1.2
SREBF1-219ENST00000580540 PKD1L3Q7Z443 1732 aa22.51■■□□□ 1.19
SREBF1-219ENST00000580540 PLEKHO1Q53GL0 409 aaPredicted RBP22.5■■□□□ 1.19
SREBF1-219ENST00000580540 NPC1L1Q9UHC9 1359 aa22.5■■□□□ 1.19
SREBF1-219ENST00000580540 PHKG2P15735 406 aa22.49■■□□□ 1.19
SREBF1-219ENST00000580540 SLC27A3Q5K4L6 730 aa22.49■■□□□ 1.19
SREBF1-219ENST00000580540 PDGFDQ9GZP0 370 aaPredicted RBP22.49■■□□□ 1.19
SREBF1-219ENST00000580540 LRP5O75197 1615 aa22.49■■□□□ 1.19
SREBF1-219ENST00000580540 NKX1-1Q15270 411 aaPredicted RBP22.48■■□□□ 1.19
SREBF1-219ENST00000580540 CCNL1Q9UK58 526 aaPredicted RBP22.48■■□□□ 1.19
SREBF1-219ENST00000580540 DIAPH1O60610 1272 aaKnown RBP22.47■■□□□ 1.19
SREBF1-219ENST00000580540 ZNF530Q6P9A1 599 aaPredicted RBP22.47■■□□□ 1.19
SREBF1-219ENST00000580540 SPON1Q9HCB6 807 aa22.47■■□□□ 1.19
SREBF1-219ENST00000580540 ZNF827Q17R98 1081 aa22.46■■□□□ 1.19
SREBF1-219ENST00000580540 ZBTB7AO95365 584 aa22.45■■□□□ 1.18
SREBF1-219ENST00000580540 HMOX1P09601 288 aa22.45■■□□□ 1.18
SREBF1-219ENST00000580540 AMOTQ4VCS5 1084 aa22.45■■□□□ 1.18
SREBF1-219ENST00000580540 PIGBQ92521 554 aa22.45■■□□□ 1.18
SREBF1-219ENST00000580540 TMOD3Q9NYL9 352 aa22.45■■□□□ 1.18
SREBF1-219ENST00000580540 PPP1R1BQ9UD71 204 aaPredicted RBP22.44■■□□□ 1.18
SREBF1-219ENST00000580540 C1orf141Q5JVX7 400 aa22.43■■□□□ 1.18
SREBF1-219ENST00000580540 ATF5Q9Y2D1 282 aaPredicted RBP22.43■■□□□ 1.18
SREBF1-219ENST00000580540 TOGARAM1Q9Y4F4 1720 aa22.43■■□□□ 1.18
SREBF1-219ENST00000580540 PALLDQ8WX93 1383 aa22.42■■□□□ 1.18
SREBF1-219ENST00000580540 HSP90AB1P08238 724 aaKnown RBP22.42■■□□□ 1.18
SREBF1-219ENST00000580540 SMARCC1Q92922 1105 aaPredicted RBP22.42■■□□□ 1.18
SREBF1-219ENST00000580540 ITGB4P16144 1822 aa22.41■■□□□ 1.18
SREBF1-219ENST00000580540 U2SURPO15042 1029 aaKnown RBP22.41■■□□□ 1.18
SREBF1-219ENST00000580540 AKT1S1Q96B36 256 aa22.41■■□□□ 1.18
SREBF1-219ENST00000580540 TFCP2L1Q9NZI6 479 aa22.41■■□□□ 1.18
SREBF1-219ENST00000580540 KDRP35968 1356 aa22.4■■□□□ 1.18
SREBF1-219ENST00000580540 PLEKHG2Q9H7P9 1386 aa22.4■■□□□ 1.18
SREBF1-219ENST00000580540 PAPPAQ13219 1627 aa22.4■■□□□ 1.18
SREBF1-219ENST00000580540 LY75O60449 1722 aa22.4■■□□□ 1.18
SREBF1-219ENST00000580540 DCAF5Q96JK2 942 aa22.39■■□□□ 1.17
SREBF1-219ENST00000580540 CFAP53Q96M91 514 aa22.39■■□□□ 1.17
SREBF1-219ENST00000580540 CASZ1Q86V15 1759 aa22.38■■□□□ 1.17
SREBF1-219ENST00000580540 ASAP1Q9ULH1 1129 aa22.38■■□□□ 1.17
SREBF1-219ENST00000580540 ERVV-2B6SEH9 535 aa22.37■■□□□ 1.17
SREBF1-219ENST00000580540 PPP2R1AP30153 589 aa22.37■■□□□ 1.17
SREBF1-219ENST00000580540 CABP4P57796 275 aa22.37■■□□□ 1.17
SREBF1-219ENST00000580540 MSH5O43196 834 aa22.36■■□□□ 1.17
SREBF1-219ENST00000580540 MTFR1LQ9H019 292 aa22.36■■□□□ 1.17
SREBF1-219ENST00000580540 ATG3Q9NT62 314 aa22.34■■□□□ 1.17
SREBF1-219ENST00000580540 PNPLA7Q6ZV29 1317 aa22.33■■□□□ 1.17
SREBF1-219ENST00000580540 KDM6AO15550 1401 aaPredicted RBP22.33■■□□□ 1.17
SREBF1-219ENST00000580540 LOC102724428A0A0B4J2F2 783 aa22.33■■□□□ 1.17
SREBF1-219ENST00000580540 HMGB2P26583 209 aaKnown RBP22.33■■□□□ 1.17
SREBF1-219ENST00000580540 SIK1P57059 783 aa22.33■■□□□ 1.17
SREBF1-219ENST00000580540 COL3A1P02461 1466 aaPredicted RBP22.33■■□□□ 1.16
SREBF1-219ENST00000580540 DDX10Q13206 875 aaKnown RBP22.32■■□□□ 1.16
SREBF1-219ENST00000580540 AKAP4Q5JQC9 854 aa22.32■■□□□ 1.16
SREBF1-219ENST00000580540 RBM42Q9BTD8 480 aaKnown RBP22.32■■□□□ 1.16
SREBF1-219ENST00000580540 ATP6V1AP38606 617 aa22.31■■□□□ 1.16
SREBF1-219ENST00000580540 PTGER2P43116 358 aa22.31■■□□□ 1.16
SREBF1-219ENST00000580540 MTHFSDQ2M296 383 aaKnown RBP22.31■■□□□ 1.16
SREBF1-219ENST00000580540 NFATC2IPQ8NCF5 419 aa22.31■■□□□ 1.16
SREBF1-219ENST00000580540 NUDCQ9Y266 331 aa22.31■■□□□ 1.16
SREBF1-219ENST00000580540 AK7Q96M32 723 aa22.3■■□□□ 1.16
SREBF1-219ENST00000580540 C5P01031 1676 aa22.28■■□□□ 1.16
SREBF1-219ENST00000580540 COL23A1Q86Y22 540 aaPredicted RBP22.28■■□□□ 1.16
SREBF1-219ENST00000580540 SLC16A10Q8TF71 515 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms